rna8134, rna8134 (mRNA) Nannochloropsis gaditana

Overview
Namerna8134
Unique Namerna8134
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2315
Alignment locationKK037247.1:647444..649242 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100529g4.9582.mrna
Orig protein idgnl|cribi|Naga_100529g4.9582
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:647444..649242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100529g4gene7877Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8134rna8134-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22564.1cds8110Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8134 ID=rna8134|Name=rna8134|organism=Nannochloropsis gaditana|type=mRNA|length=2315bp
CCTATTCGAGGGGGCCGCCTCATATCCTCGTCAGGCGCATCCACGTCGAC
CACTCTCGCCCCTCCTGCCGCTCCTACCGCGGCCTCCTCCTCCAGGGCTG
CAACCCCCTCTTCTCTTGCCGCCCTTACTGGCACGTCTTTGCCCGGAGCC
AACACAACGTCCCTTCAGATGGAAGAACCCGCCCCGCTGTCGCCGAGCAT
GCCGCATAAAGTCCTCTCTTCGTTCGAAGTCACCATGTCGCCGCCTCGGC
ATCCGTCACCCGCCCACCGCAGCACTTCTAAACACAAAATAAGCAGTGCT
TGGCTTCCCCTCGGGGTCATGTGCGTGGGTGTGGCCTGCTTGTTCGCCAC
CCAGAACCTGATCGCCCCGAACCTGACCAGCATGGCGGAAGAATTCGCGT
TGGACAAGGAGGCGCGGGATCTGCTGTTGGGGGCACGCCTGCCCCTGGCC
TACAGCGTCTTTTCGATCCCGGGGGCCATGGCCTTGGGCCTCCTCGCGGA
CTGTGGGAGCCGGCGGCTTTTGTTGCTCTTCGTCTTGCTCCTGGGGGCGG
GCGCGACCCTGATCACCGCCTACGTGGAGAGCTACGGGGGCCTCTTCTGG
CTCCGCGTCGTCAGCGGCACGGCCACGAATGCCGCGATCCCCATCGCCTT
CTCCTTCCTGGGCGACCTGTACCCGCCGGACGACCGGGCCTTGCCCTCCA
CCCTTATCACGGCCGCGATGGGGCTCGGCATTTTGGTCGGCCAAGTGCTG
GCCGGGGTCCTCGGTCCTCGCATGGGCTGGCGAGCGCCTTTTGTGCTGAC
CGCCCTTCCCGCCCTGGCGGTGGGGCTTTTGACTTGCCTGTACGTCCATG
AACCGGTTCGGGGTCAGAGCGAGCAGGCGATGGCGGACTTGATGCGGGAA
GGGGGAAGAGGACACCCGGCGGGGCCCGCGCGGAAATTGGACGCCGGCGC
CTTTTGGAGGATGCTGCAGGTGCGGACGAATATCCTCCTCATCCTCCAAG
CGTTCCCCGGAAGCGTGCCCTGGGGCGTGCTTTTTGCCTATTTGAACGAT
TTCTTGTCGCAGGAAAAGGGTCTCCCCGTGGAGCAGGCCACGCTCTTGGT
CTCTCTCTTCGGGGTGGGCTCGGCGGTGGGAGGTATCGGGGGCGGGCTCG
TCGGTCAATGCACCTACCGTCGGAACAAACGCCTGCTGCCCGTGGTGATG
GCCGCGAGCACCGGCCTCGGGGTCCTCCCCATGCTCGTCTTGGTCAACAG
CACCTTCGTCTCCACTGCCTACGTGGTCCTCTTCGTCATTCCCTGCACCT
TCTTGGCGGGTGTCCTCGCCAACATCAACGGCACCAACGTCCGACCGTTA
CTTTTGAACGTGAACGTCCCGGAAACCCGAGGCTCGGCCGTGTCGGTCAC
GAATCTGGTGGCCAACTTGGGGAAAGGCGTGGGCCCGAGCATTGCCAACG
CCTGGATGGAGCGGGTGGGGGGAAGTCGGCAGAGCGCCTTCAACATGACG
CTCTCCCTGTGGCTGCTGTGTGGGGCCCTGGTCTCCCTCCTGTCTTTTAC
CCTGGTGGAGGACGAGACGCACGTCCAGGAGGAGATGTGCCGCTCGACCT
GGTCGGGCACGGGGGCGGGGGCGGAGCCGGCCCTGGAGCCGACGCGAACG
GGCAAAGATGCGCGGGGTTGGAAGCGCCACGGGTACAGTGATGAGGTCGA
GGTTCTCGGGCTGCTGTCGGAGCAGGGGCCGCGGGAAGGAGGGCCAAGCC
ACGAAGGGCCCCACCACCGGGTTTCAACTGCCAGTAACGGCGTCATCCAA
CGGCTGCAGCACCTGCTCACGGAGGAGGGACACGGGCTGGCGCGTCAAGG
CCCCCATGCCAAGCCGTCGCAGCCCTCGGTCCATTCCTCTTACCACCACC
CCTCCACCCTCCTGACCCAACCGCTGGCGCAGGGCCACCACCGCGACGAC
GGCCCTGCCGTGCTGGATTCCCCGCCGAATTCTTCCTTGCACCACCGTGC
CTCCCACGTGCACCCGCACGAGAACGGCGGGGATGGGGCCGGCCACGGGC
CAGCCTATGTGTAGTCTGCGGGGATACTGGATGCACATGGAACGGGGGTA
GAGTGCCGGTATCCACGCGATGGAATAGGCAGGGGCCAGCAGGAGAGTGA
TGGAGGCTGCAGTTTAGGAGGTACTTGTAGGGAATGGACGGGACAGATGG
TGCACTGAGGCACGGTCCGCTGAGCATGGGCAGGTGATGCGATGCGAAGC
TCTTCTTCATATTTCTTGTTTAAATCCGTTCAAAAATGAAAGCACCCTTG
CCACCCAGAATTTTA
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protein sequence of rna8134

>rna8134-protein ID=rna8134-protein|Name=rna8134|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
MVVGVRWMEFRVFFSTRPLTASAHTTSCCRCRIMSKRLGFLLLLFLSTLG
WSEAFHGVHPLPNQARYASPRAKVQSQPLARSPSERTALIRREVVAIIPQ
VLFVAACAGAVFGYVATHIDEIVAKQKVAVEKTMTKQNADLKSAQQQQKE
AIDAAMKKQQAAIKKIQEDQNKR
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mRNA from alignment at KK037247.1:647444..649242+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8134 ID=rna8134|Name=rna8134|organism=Nannochloropsis gaditana|type=mRNA|length=1799bp|location=Sequence derived from alignment at KK037247.1:647444..649242+ (Nannochloropsis gaditana)
CTATGATTGCCCGTGTTACTGTGATCATATTGTGTCGAAGGGGACTGTAA
GAGCTTAAATTTTGAGTGATTCGTCATGAATGTTGCCTGGCCCGATGACG
CCAAGACCGGCCACCCGGAACACGCGTgtcaaggggaagaaacgTTGGCG
GGTATAACTTTCTTACTTGTTTTGCAAGTACCTTGTCCACATGAAGCTGA
GGCTTGTGTAACGCATTAAATGTTGATGGAATGGTGGTAGGTGTGCGATG
GATGGAGTTTCgcgtttttttttccactcGTCCCCTTACAGCCAGTGCCC
ACACCACTTCCTGTTGCAGGTGCCGCATTATGTCAAAGCGTTTgggtttc
cttcttcttcttttcctctcaaCTCTGGGATGGAGCGAGGCATTTCACGG
AGTGCATCCTTTGCCGAATCAGGCAAGGTATGCCTCTCCTCGGGCTAAGG
TGCAGAGCCAGCCTCTTGCTCGAAGCCCCTCGGAACGCACAGCCTTAATC
CGGCGTGAGGTTGTGGCAATAATCCCCCAGGTCCTCTTTGTTGCAGCGTG
CGCAGGTGGTAAGTGATAAAAGGTTCGAAGGAACGGATTGGTGGGGTACT
CGACGCGGGTGAtcaaaaaaaggaaaaggcggtgTTGATTGTCGTGGCAC
GACAGAGTCCTTACGGGTTGGGCCCCGCTTGAGGGGACCTGAGTATTGTT
AGTGACGCACACATGTGGGCAGTCTTACACCTGTAGGGGCAGTTTTTCAT
GGCGCGTTCAAAAACACTCGAGGCCGACGTGTGTGtgcatgtgtgtgtgt
gaGAATACTCTGTGTGGCACGCCTGCGTGTGATTGCTACTTTAGCGCATC
GCGTGAGGAATAAAgtgcaggagaaggcaggaagaCGCGAAGGGGAGCAG
GATTGACACACCGTGAGGTGGATCCTATATTGTCTGATGGACCTTTGTGC
ACTCATTCCCCCCTTTGACCAACCcaatctctccctccccttcttcggaT
TGCCTGTGAACCCCAGCGGTCTTCGGCTACGTGGCCACGCACATCGATGA
GATCGTCGCCAAGCAaaaggtggcggtggagaagaCCATGACCAAGCAGA
ATGCCGACCTGAAGAGcgcccagcagcagcaaaaggAGGCGATCGATGCT
GCCATGAAGAAGCAGCAAGCCGCCATAAAGAAAATTCAGGAGGACCAGAA
CAAGCGCTGAGGCACCGGGGTCGTGCCTGTGCTTTTGTAGATAGGACTAA
AGAAAGGCAGGTTTCAAAAGGGATCAAGGAGGATCGCTCGGAGATTTTAT
GTCGGTGTCCATAGCCTATGATGCTATGAAGCAGAGGCGGGGTTGGATCT
GACCATGCAAGTTGATGCACGCGAAAAATAGTTAATGAAACGCACTCCTC
TggctcctctttcttgggCTAGCGTGCATGTTTGTGTCATTTGCTTTAAA
TCTACCAGGCCAGGTGCTAGATATTTGCTTCGGGCCCAACAGATCTGATA
TTTGTGCCTACACACATTTCGGACGTGGCTTCCGGGGAAATCTAGCCCTC
GCTCCTGGAAGCACGTCCGCCCTAAAAATCAGGTCCACTCGGGTCGTGAG
CGTTCCAGCTTGTCTTCCACACAGCTGTTCAATCTTTTGCAAGGGTGTAC
ATTCCCGAAACGTTTGCGAGTCACCGGGGTAATGCAACGGGGCCTCAGGG
AATAGGGAGTGCGTACCACGTGTTTAAAAAGTTTTAAAAGGTCACACGCA
CCATCACATGTTTACATTTCTTATAATTCACTGCAAAATATTTGACTGG
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Coding sequence (CDS) from alignment at KK037247.1:647444..649242+

>rna8134 ID=rna8134|Name=rna8134|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at KK037247.1:647444..649242+ (Nannochloropsis gaditana)
ATGGTGGTAGGTGTGCGATGGATGGAGTTTCgcgtttttttttccactcG
TCCCCTTACAGCCAGTGCCCACACCACTTCCTGTTGCAGGTGCCGCATTA
TGTCAAAGCGTTTgggtttccttcttcttcttttcctctcaaCTCTGGGA
TGGAGCGAGGCATTTCACGGAGTGCATCCTTTGCCGAATCAGGCAAGGTA
TGCCTCTCCTCGGGCTAAGGTGCAGAGCCAGCCTCTTGCTCGAAGCCCCT
CGGAACGCACAGCCTTAATCCGGCGTGAGGTTGTGGCAATAATCCCCCAG
GTCCTCTTTGTTGCAGCGTGCGCAGGTGCGGTCTTCGGCTACGTGGCCAC
GCACATCGATGAGATCGTCGCCAAGCAaaaggtggcggtggagaagaCCA
TGACCAAGCAGAATGCCGACCTGAAGAGcgcccagcagcagcaaaaggAG
GCGATCGATGCTGCCATGAAGAAGCAGCAAGCCGCCATAAAGAAAATTCA
GGAGGACCAGAACAAGCGCTGAATGGTGGTAGGTGTGCGATGGATGGAGT
TTCgcgtttttttttccactcGTCCCCTTACAGCCAGTGCCCACACCACT
TCCTGTTGCAGGTGCCGCATTATGTCAAAGCGTTTgggtttccttcttct
tcttttcctctcaaCTCTGGGATGGAGCGAGGCATTTCACGGAGTGCATC
CTTTGCCGAATCAGGCAAGGTATGCCTCTCCTCGGGCTAAGGTGCAGAGC
CAGCCTCTTGCTCGAAGCCCCTCGGAACGCACAGCCTTAATCCGGCGTGA
GGTTGTGGCAATAATCCCCCAGGTCCTCTTTGTTGCAGCGTGCGCAGGTG
CGGTCTTCGGCTACGTGGCCACGCACATCGATGAGATCGTCGCCAAGCAa
aaggtggcggtggagaagaCCATGACCAAGCAGAATGCCGACCTGAAGAG
cgcccagcagcagcaaaaggAGGCGATCGATGCTGCCATGAAGAAGCAGC
AAGCCGCCATAAAGAAAATTCAGGAGGACCAGAACAAGCGCTGA
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Synonyms
Publications