rna8132, rna8132 (mRNA) Nannochloropsis gaditana

Overview
Namerna8132
Unique Namerna8132
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length423
Alignment locationKK037247.1:644407..644766 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100529g2.9583.mrna
Orig protein idgnl|cribi|Naga_100529g2.9583
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:644407..644766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100529g2gene7875Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8132rna8132-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22565.1cds8108Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8132 ID=rna8132|Name=rna8132|organism=Nannochloropsis gaditana|type=mRNA|length=423bp
ATGCCGACATACTTGGGTATTGAAGGCGGAGGGACGACGTGGAAGGTGGC
CATAGCACAAGAAAAGCCTGACAACATCGTAGAGTCCATCCGTTTTGATA
CCACCACCCCCGACGAGACCTTTGGGAAGATCAAGGAATGGATCAAGGAC
AAGACCTACGACTCAATCGGCATCGCCACCTTCGGCCCCTTGGACCCCAA
ACTTTCCTCGCCCACGTATGGACACATCACCTCCACTCCCAAGCCCGGCT
GGAAGAATGTAGATGTCGTCGGCGCCTTGACTGACGGGAGCAAGCCCGTC
CTCTTCGACACGGACGTGAACGCCCCCGCCCTCGCCGAATACACCTACCA
CCGACCGTCCATGGCCTCGTCCACCCTGAGGGCGGCCACGTCGCGCCCTT
CCGTCTCCCTGCGGACGGGCTGA
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protein sequence of rna8132

>rna8132-protein ID=rna8132-protein|Name=rna8132|organism=Nannochloropsis gaditana|type=polypeptide|length=96bp
MLISSLFLNILHKHCAGTLLGNAMSLTKTFTYIHRETMHASDPQLIWHGT
QLQSSKFLRSQRHDSKPEFDAPSISQELFSGIESQYFIGQAGNLIS
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mRNA from alignment at KK037247.1:644407..644766+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8132 ID=rna8132|Name=rna8132|organism=Nannochloropsis gaditana|type=mRNA|length=360bp|location=Sequence derived from alignment at KK037247.1:644407..644766+ (Nannochloropsis gaditana)
ATGCTTATCAGTTCTTTGTTTCTTAACATGTGGGACTCGACTACTCACAC
CCCGCTGCCGAGACGGTTGAACTTCAGGTCATGAGTTGACGCTAATAGCC
TCCATAAGCACTGTGCTGGTACTCTCTTAGGCAATGCAATGTCACTTACG
AAAACCTTCACCTATATACACCGAGAAACGATGCACGCGTCGGATCCTCA
GTTAATTTGGCATGGCACACAGCTTCAATCGAGCAAGTTCTTACGTTCCC
AGAGACACGACTCAAAACCAGAATTTGATGCGCCGAGTATTTCACAAGAA
TTATTTTCAGGAATAGAATCTCAATATTTCATCGGACAAGCAGGTAACTT
AATTTCATAA
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Coding sequence (CDS) from alignment at KK037247.1:644407..644766+

>rna8132 ID=rna8132|Name=rna8132|organism=Nannochloropsis gaditana|type=CDS|length=582bp|location=Sequence derived from alignment at KK037247.1:644407..644766+ (Nannochloropsis gaditana)
ATGCTTATCAGTTCTTTGTTTCTTAACATCCTCCATAAGCACTGTGCTGG
TACTCTCTTAGGCAATGCAATGTCACTTACGAAAACCTTCACCTATATAC
ACCGAGAAACGATGCACGCGTCGGATCCTCAGTTAATTTGGCATGGCACA
CAGCTTCAATCGAGCAAGTTCTTACGTTCCCAGAGACACGACTCAAAACC
AGAATTTGATGCGCCGAGTATTTCACAAGAATTATTTTCAGGAATAGAAT
CTCAATATTTCATCGGACAAGCAGGTAACTTAATTTCATAAATGCTTATC
AGTTCTTTGTTTCTTAACATCCTCCATAAGCACTGTGCTGGTACTCTCTT
AGGCAATGCAATGTCACTTACGAAAACCTTCACCTATATACACCGAGAAA
CGATGCACGCGTCGGATCCTCAGTTAATTTGGCATGGCACACAGCTTCAA
TCGAGCAAGTTCTTACGTTCCCAGAGACACGACTCAAAACCAGAATTTGA
TGCGCCGAGTATTTCACAAGAATTATTTTCAGGAATAGAATCTCAATATT
TCATCGGACAAGCAGGTAACTTAATTTCATAA
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Synonyms
Publications