EWM22565.1, cds8108 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22565.1
Unique Name	cds8108
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037247.1:644407..644435 +
Alignment location	KK037247.1:644505..644766 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM22565.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100529g2.9583.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:644407..644435 +
KK037247.1	supercontig	KK037247.1:644505..644766 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM22565.1 vs. NCBI_GenBank
Match: gi|585103115|gb|EWM22565.1| (hypothetical protein Naga_100529g2 [Nannochloropsis gaditana])

HSP 1 Score: 198.749 bits (504), Expect = 1.220e-64
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query:    1 MLISSLFLNILHKHCAGTLLGNAMSLTKTFTYIHRETMHASDPQLIWHGTQLQSSKFLRSQRHDSKPEFDAPSISQELFSGIESQYFIGQAGNLIS 96
            MLISSLFLNILHKHCAGTLLGNAMSLTKTFTYIHRETMHASDPQLIWHGTQLQSSKFLRSQRHDSKPEFDAPSISQELFSGIESQYFIGQAGNLIS
Sbjct:    1 MLISSLFLNILHKHCAGTLLGNAMSLTKTFTYIHRETMHASDPQLIWHGTQLQSSKFLRSQRHDSKPEFDAPSISQELFSGIESQYFIGQAGNLIS 96

The following BLAST results are available for this feature:

BLAST of EWM22565.1 vs. NCBI_GenBank

BLAST of EWM22565.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585103115\|gb\|EWM22565.1\|	1.220e-64	100.00	hypothetical protein Naga_100529g2 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna8132	rna8132	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications