rna8129, rna8129 (mRNA) Nannochloropsis gaditana

Overview
Namerna8129
Unique Namerna8129
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1161
Alignment locationKK037247.1:641160..642223 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102185g1.4766.mrna
Orig protein idgnl|cribi|Naga_102185g1.4766
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:641160..642223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102185g1gene7872Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8129rna8129-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22568.1cds8105Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8129 ID=rna8129|Name=rna8129|organism=Nannochloropsis gaditana|type=mRNA|length=1161bp
ATGGCCAGAAAAAGTGGGCCGTCCACAAGAGAGAAGTGGAAGCTCCTTCC
CCTCCTTCTCCTCCCCCTCCTCCACCCTGCTGCGGCCTTCGTTCCTCCCT
ACCGCAATCCCGACATCGCCTTTGACGCACGTGAAGCTTTGGTTACGGAC
AACAGAGTTGAGTCCATCTCATTCCGCCGTCTGTCGGTGAAATGTGCTGA
GGCGACCTCGAGCGCCCCCCCAGCCTCCCCTCCCCAGCGCCCTCCCTCCT
CCCCCAGATCTTCTGAGGCGAATCAACGCTCAGTCATCTCTTCCACCCTC
CCTGGTGGCAATTGGCCCCCGAACGGCTTTCGTCCCTTCAAATCCTTGCG
AGAAGAGAACGGCGACGTGGTCCTGGACGTGGACGAGCCCCATCAGCCTT
TGATCGCCCCCCTGACCTCTCAATTCTTCGCTGGCTTTCAGTTGCGAGAG
CTGGACGACAGCAACATGAATACATTCTTGAAAGACACGGGGAAAATACA
GAAAACCTTACGGACCCTCCTGTGGTTCGCCTACCTGCTCTGGCCCTACA
TCGGCTTCGGAATTTTCAGCTCCATCCTCGCCCAGCTCCTGCTCGCGACC
GTGAGCCAGGAGCACGTGGAGCAAGGCTCCTTCTTGACCATGCTGGACGT
GAAAGACTACCCGGATTTAAAAATCGGCCACGGCTTCATCGGCTCCATCC
TGGGCTTTTCCATCGCCTTCCGCACCAACGCGGCCTACGACCGCTACTAC
GAGGTCGCAAAATCCTCAGCATCATCCTGGAGAACAGCCGTTCCATCCTC
CGAGACGTGTACTCCTTCCTCCTCAAGGCTCCCGCCTTTCCCTCTCCAAC
CTCCTCCTGCTCCTCCCTCCCCGTCCCTGACGACGCCGCCGTCCTCGTCA
TCAGCAGCGACCTCCGACGTCGCCTCAACATCCTCTTCGCCTTCATCCGC
CAGTCGGTGCGGGAGTCCTTGTCGGGCTTTTCGCCCAACTCGGACATGGG
TACGGTCTCTTTCTCCAACTCCACCTTCTACCTCGACCCCTCCCTCCCCC
ACCTCCTCGACCTCCTTTCCAAGGAGGAAGCAGAACGCTACGCGGCTCTC
TCCCCTCGCGCCCGCCCCGGTGCTGTCTCGGCGGAGATTAATATCATTCT
TCAGATTTTAA
back to top

protein sequence of rna8129

>rna8129-protein ID=rna8129-protein|Name=rna8129|organism=Nannochloropsis gaditana|type=polypeptide|length=171bp
MLLVSVEDSFSCPLLCWAFPFLSLYRTPSLPLSVLTSRHRRVLLPLRLFL
SPPSLPPSSSPPGILNIGRSIENPYAWETFGTRPFLPPSLLPSSSLPPSL
PPIPPLSLLSSPRHRFRRLRHPAGPRLEFDRHRLARRPSRLPEGVGAIPP
RPRGRAPRLTRPVSSGYHGGG
back to top

mRNA from alignment at KK037247.1:641160..642223+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8129 ID=rna8129|Name=rna8129|organism=Nannochloropsis gaditana|type=mRNA|length=1064bp|location=Sequence derived from alignment at KK037247.1:641160..642223+ (Nannochloropsis gaditana)
ccttcctcccccagggCCACCTGAGCCGGCTGACAGACGCGCATTCGACC
ATGATCCGAGTCCGCGACACGCCGGTTCCCTACCCCTACCTCCTCATCCT
GAACGTTGCCACCTTCATCTTCGTGTACagcacccccttcctctacaACA
CGGGGCCCCAGGGCCGCTACTGCGGCGTCCAGCTCCTGGTCGTGGCCTAC
TACGGTGCGGGCTCGTCTATATGTACACATATACCTATGTATATATaaat
atgtatatatatatgtatacaTGTATATATGCTCCTTGTGTCGGTGGAGG
ATTCGTTCTCGTGCCCGTTGCTTTGCTgggccttccctttcctctctctt
tatAGgactccttccttgcccctgtCTGTCCTCACGTCTCGCCATCGGAg
ggtccttctccccctcagGCTCTTtctatcccctccctccctccctccct
cgtcctcccccccagggATCCTGAACATTGGCCGTAGCATTGAGAACCCG
TACGCCTGGGAAACCTTCGGTACGCgaccctttctccctccctccctcct
tccctcttcctccctccctccctccctccctcccatcccccctctttccc
tcctttcctcccccagacATCGATTTCGAAGGCTTCGCCATCCAGCTGGC
CCGAGACTTGAATTCGATCGCCACCGCCTTGCAAGACGACCGAGCCGCCT
TCCTGAAGGAGTTGGTGCAATCCCACCAAGACCGAGAGGACGGGCCCCAA
GGCTGACCAGGCCCGTGTCCTCCGGGTATCATGGCGGTGGataggggtgg
agggaggagggggtaaGCAGTAGGAGCAGCGGGCAATGACACCAGCCCCC
TTGCCTTGCACGGTGAAGGGGCCTTATGGCAAGTCGAAtgtggcggggga
gaggaaggagagggatgtaCAGGGAGCGTTGGAAGAGGCGAAGCTTCGAC
GTAAACGACCGGGGTATGACGGGCAAATGGTAGTCATGACGGAAGAATCG
CTCATTACGAATTGAAATAATGGAATGTTATGATGACACAAGAATAATCG
ACTGAGTGAAACAA
back to top

Coding sequence (CDS) from alignment at KK037247.1:641160..642223+

>rna8129 ID=rna8129|Name=rna8129|organism=Nannochloropsis gaditana|type=CDS|length=516bp|location=Sequence derived from alignment at KK037247.1:641160..642223+ (Nannochloropsis gaditana)
ATGCTCCTTGTGTCGGTGGAGGATTCGTTCTCGTGCCCGTTGCTTTGCTg
ggccttccctttcctctctctttatAGgactccttccttgcccctgtCTG
TCCTCACGTCTCGCCATCGGAgggtccttctccccctcagGCTCTTtcta
tcccctccctccctccctccctcgtcctcccccccagggATCCTGAACAT
TGGCCGTAGCATTGAGAACCCGTACGCCTGGGAAACCTTCGGTACGCgac
cctttctccctccctccctccttccctcttcctccctccctccctccctc
cctcccatcccccctctttccctcctttcctcccccagacATCGATTTCG
AAGGCTTCGCCATCCAGCTGGCCCGAGACTTGAATTCGATCGCCACCGCC
TTGCAAGACGACCGAGCCGCCTTCCTGAAGGAGTTGGTGCAATCCCACCA
AGACCGAGAGGACGGGCCCCAAGGCTGACCAGGCCCGTGTCCTCCGGGTA
TCATGGCGGTGGatag
back to top
Synonyms
Publications