rna8126, rna8126 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8126
Unique Name	rna8126
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	528
Alignment location	KK037247.1:636991..637767 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100993g3.6880.mrna
Orig protein id	gnl\|cribi\|Naga_100993g3.6880
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:636991..637767 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100993g3	gene7869	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8126	rna8126-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22569.1	cds8102	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:636991..637767+
coding sequence from alignment at KK037247.1:636991..637767+

mRNA sequence

>rna8126 ID=rna8126|Name=rna8126|organism=Nannochloropsis gaditana|type=mRNA|length=528bp
ATGCCAGTCTGTCGGGGTGCCGCATCGGTCCACCGGAGTCCTCGCTCTCG
TCCATATCGGGCGTCCCTGCGCTTGCAAGTGTCTTTTGATGCCCCTCCAC
GCTCATCATCGACGGTCCACTGCGCACCTTTCCCCTCCCTGTTGCCGTTT
CTTTTCCCAATCAGGTCACAGCCTAGCCCGGGGGCGGCCGCGACTATGTC
ACCCGACCTTAGGGTAGTCTCTGAGGGAGGAGGAGGGGGGAAGGGGGAGG
AGGGAGGGGAAGGGGAGGAGGAGGAGGCGGAGGACGGAAGAGGCGCAAGG
GAGGAGGAAGTGCGGGCAGCACGCTGGTGGGAAGACCGGGCGGCGCTCTC
GTCCTTGCTGCGGGATATCAGGCAAGGCCGTCGGCCCGTCGACGGCCCCC
TCCTCGATCTTCTCCTCGTCATGGGCCGACGTGTCTTCGACGCCAGCTAT
CGCCCGTCAGCTGGCGTTCTCTCCGCCTGCCGACCTCGGTTCAAGGAGGG
GACGAAGAATGATGAGGCGTCGGTGTAG

protein sequence of rna8126

>rna8126-protein ID=rna8126-protein|Name=rna8126|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
RGGGRERVSMCSPRLASVRPPPERARHLANLPRALSRRRGLRFPQRGLRP
PYLLPAPLPFHPPNRTFINPCFPSPSLPPVLHPALPPGPWPSAHASHPRH
LNGDLVRLGRGRGGDPPREGDGRGRRGGGGGRGRSASAHARAGAGRTLSL
RVERPPTPFPSPGPSPRLEQEGCASLRDEGGASVERDEMSV

mRNA from alignment at KK037247.1:636991..637767+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8126 ID=rna8126|Name=rna8126|organism=Nannochloropsis gaditana|type=mRNA|length=777bp|location=Sequence derived from alignment at KK037247.1:636991..637767+ (Nannochloropsis gaditana)
cggggcggagggagggaaagagtcTCCATGtgctccccccgccttgcctc
tgtccgccccccccctgagCGTGCGCGTCACCTCGCAAACCTCCCTCGGG
CTCTTTCTAGAAGAAGGGGCCTTCGCTTCCCCCAACGAGGGCTGCGGCCA
CCatacctcctcccagccccgctccccttccacccccccaACCGGACCTT
CATCAACCCttgtttcccctccccctccctccctcccgtcctccaccccg
ccctcccccctggcccgTGGCCCTCGGCCCATGCTAGTCATCCACGCCAT
CTTAACGGAGACCTTGTCCGTCTCGGTcgcgggcgcgggggggaCCCTCc
aagggaaggcgatgggcgtggaagacggggtgggggaggaggaagaggca
gaagtGCGAGTGCACacgcgagggcgggggcggggcgcaCCTTGTCTTTG
CGGGTAGAGAGACCCCCgacgcccttcccttcccccggcccctccccccg
cctcgagCAGGAGGGATGTGCATCCCTcagagacgagggaggcgcgtCCG
TCGAGAGGGATGAGATGAGCGtgtgaggggagaggaggggaggaggagga
ggatggatcTGGAAGGGCGGCTGGAGGTTCGTCACGCCCTCTCCACGTgg
agtagggagggaggggtgagcATGGGTGGCGCCGTGGCGCGTCTTCGAAT
GGAACCAGGACTGTCGCGTGTTTGAACATTTAAAGAGCCGTTTCGGAAAG
TAAAGTGTACACTCAAGGATCGTCGCC

Coding sequence (CDS) from alignment at KK037247.1:636991..637767+

>rna8126 ID=rna8126|Name=rna8126|organism=Nannochloropsis gaditana|type=CDS|length=576bp|location=Sequence derived from alignment at KK037247.1:636991..637767+ (Nannochloropsis gaditana)
cggggcggagggagggaaagagtcTCCATGtgctccccccgccttgcctc
tgtccgccccccccctgagCGTGCGCGTCACCTCGCAAACCTCCCTCGGG
CTCTTTCTAGAAGAAGGGGCCTTCGCTTCCCCCAACGAGGGCTGCGGCCA
CCatacctcctcccagccccgctccccttccacccccccaACCGGACCTT
CATCAACCCttgtttcccctccccctccctccctcccgtcctccaccccg
ccctcccccctggcccgTGGCCCTCGGCCCATGCTAGTCATCCACGCCAT
CTTAACGGAGACCTTGTCCGTCTCGGTcgcgggcgcgggggggaCCCTCc
aagggaaggcgatgggcgtggaagacggggtgggggaggaggaagaggca
gaagtGCGAGTGCACacgcgagggcgggggcggggcgcaCCTTGTCTTTG
CGGGTAGAGAGACCCCCgacgcccttcccttcccccggcccctccccccg
cctcgagCAGGAGGGATGTGCATCCCTcagagacgagggaggcgcgtCCG
TCGAGAGGGATGAGATGAGCGtgtga

Synonyms

Publications