rna8119, rna8119 (mRNA) Nannochloropsis gaditana

Overview
Namerna8119
Unique Namerna8119
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2836
Alignment locationKK037247.1:613817..614733 -

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Properties
Property NameValue
ProductCWC16 protein
Orig transcript idgnl|cribi|Naga_100401g2.1217.mrna
Orig protein idgnl|cribi|Naga_100401g2.1217
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:613817..614733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100401g2gene7862Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8119rna8119-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22578.1cds8095Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8119 ID=rna8119|Name=rna8119|organism=Nannochloropsis gaditana|type=mRNA|length=2836bp
GTCAGGTTAGGGGGGGTGGATACGAGGTGCGGACTGGGCTTCAGTGTTCC
TCTGCTCCGTCACTGCCCCTCTTGCCCCCTTATTCCAAGCACGTCCTTCT
TCCCTCTTTCCCTTTCCCCCTCCCTCCTTCCTTCCCTTTCCCCCTGCCTC
CGCAGCTACGGCGTCTTCTTCTCCGCCCAGATGATCATGGGGAGCGGGTG
GGTGGACCAAATGCCCCGCACGGGCTTCGGCACCTGGTTCTCCCTCTTCT
ATGCCTTGGCAGGCAGCCTCCTCATCTACCACGCCCTGGGAGACCTGGCC
TCCATCCCCCTCACCTTGCGGCAGAGCCGTTTCGAAGCGGAAGTCTTCGC
GCAATGGGGGGACCATCTCACGGAGGAAACGCTCGATTCTTTGTCCCGAC
GCGCGACGGAGATCGCGGCGGTGGGGGCTTCGTCCCCCTTGCGGCGGCTA
CAGCAGCAGCTTCTCCTGCAAAAACAGCGACAGGAGGAAGGGAAAAGACA
CGAGGAGCCGCCGTCGGAAACCGGGCCGGTCCTTCCCTTGTCGAAGCCCG
GTCAGGCGCCTGGACAGCTGTCGCTTGAAGAAGAGGATCTGCCCGCGGAC
GGCGCCCTCCAAGCACAACCTCCCTCCTTCTTCCCTCCTCCTCCCCCTCG
CCTTCCTCCTTTCCCCGCCTCGGATCCCGCACTACCGTTTTTGCCGCGCG
CCCCAGGCGTGCTTGAAGAAGGGAGGGCAGCTGGCAGAGGAGGAGGAGGG
AGTGGACAAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGAAGGAGGGGGTGAGGTTCTGGGGCACTGTCATGCAGGGGAAGAGG
TTCCAGCAGTCAAGAGGCTGCCGAGGGATGCGCCGTCCCCCGGCGCCGCC
GCCTCCTCCCTCCTCTCCTCCTCCCCTTCGTTTCTGCACCCCTCTCCTCC
TCCGCAAGCTCCCGCCAAGGTCTCCGCGTCCTCCTCCACCTCCTCCATTC
CCACCTCCTCGTCGACCCCTCCCGCCTCATCACTCTACACACGCCCCATG
ACAACCCAGGCCTCTTTCCCTCACCCGACCTCCTCCCTTGTCTCTTTTCT
TCCCTCCTCATCCCCTGGCCGCCATCCAAAGCGCACCGACGCGGGAGGGG
GGGGAGGGAGGGCCGGGGGAGGCGACGGGGGCGGGACGAAGGAAGTGCCC
AAGGTCCCGAGCTCGATCTCTCGGGAGGAGTTCATCATCAGCATGATGCT
CCTCCTGGGCCGCGTGGACATGCTCCACGTCCGGGAGGCGCAGAAAGTCT
TCGACCAGCTGGATAAAGACAAAACGGGCGTCCTGGACGAGGCGGACGTG
GTTCGCCGCGTGGCCCAACAGACGGGGCTGCAGTACCAAGCCTCCCGCTA
CCGACGGGGGGGAGCGGGAATACCCCGGGGGGAGGGAGCGGCTCGGTGCG
AAAGAACGGGGCCCATTCCTCGCCCAAACGACCGGGCGCGGGGAGAGGGG
GGGGGGGAGGGGAGGGGAGGGGCGGGCGCCGACAAGGAGGGAAGGAGGGG
GGAATGGAAGGGAGGGGTCAGGGTCCTTGCAGCGGAAGGAGGAGGGAAGG
CGTATGGACCGGGAGCCCTCGTCCTCTTCGTCCCTTGTGCCCTCTACTCT
GACCTCCTCCTCCTTCACACGCGCGTCTCCCGCCTCTGTAGCCCCGCAAG
AGCAGCTGTACCTGCAGCGGGCGCAGGCAGCGCCCCCACCACAGCATGAA
CAGAACGGAGGCGATTGAGTGCACAGGATGCCGGCACTGGAACGACCCGA
GAGAGAGAAAAAAGTCATCATCGTTCCGCTTTCTTTCGACGCACTTTTGG
CGACCCTCCTCCTGCACAACCTTTACTTTCCCTCCTTGTCCCTCACCCCC
CCCCCTCACTCCCCCTCGGACGACGATCCATAGCTAGCTAGCAGTCCCTG
CAACCCCCCGCCCGCCTGTCCTCCCCCTCCCTTCTCCACCCCGGCCCCTT
CCTTAGCTTCTGCTCCTCTTTCACCCTCCTCCGGCTTTGGCTTCCCCTCC
CTTCCCACTTCCCACTTGGGCATTTTGTTCCCCCCCTCCTTCCCCTCCTT
CCCTCCGTTCTCCTCCGCCTTCCTCTTCTTCGCCTTTATCCGGACGAGCG
GCTTCAACATTGTCCTGGATCCGTCACTGAGCCCCGGCGCTGCGCCCAAT
AGCCCGTGTTCTGTACCTCGCGCCCTCTTTCCCTCCCTCCCTCCCATCCC
CCCTCCTTCCTCGTCCGAATCCTCCAACTTCTTCAAGCCCCCCACGCCCC
CCTTCCTGGCCAAGGCAAAGGCCCGCCGCGCCTCCTCCTCCTCCTCCTCC
TCCCCCTCCTTCCCTCCCTCCCTCTGCCCCTCCCCGTACATCTCCACCAG
CCGATCCCCCCGAATCAGATCCCGCTTGTTGCCCATCACCTTGGTCTCCT
CCAACGCATCCAAAATGTCCATCTCCAGCTTCGAGTCGATGGTCCGGTGC
TCCAAGGCCTTCATCGCGTCCTGCTGCTCCTCCTCTGCCCGTCGCTCCCC
CTCCTCCTTCTCCGCCTTCTCTTGCTCCTTCCAGACCTCGAACAGCCGCT
TGGCACCGTGCTCCATCGCGTAGTCCATTTTTTCAGGGTCCGTGATGAAG
GTGATCTCCCGCGAGCAGGTCATGCACTTCATGTAAAACCGGAACTTCTT
AATCCCCTTGTACGTGTCCCCCTGGACGTCTTCCTTCCTGGAAGCCACAG
GGAAGGAGCGAAAGCGGGTTTTTGGTGCCGGGGTTAAAAAAAGAACAAAT
GATGGGGAATGATTAGGATTGGTCAGACACAATGTA
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protein sequence of rna8119

>rna8119-protein ID=rna8119-protein|Name=rna8119|organism=Nannochloropsis gaditana|type=polypeptide|length=198bp
MSFPFSPLFQIPFTFPIGKMGERKVLNKYFPPDFDPNLVPRTKFDKFKQI
ETRMMIPFNIQCDTCGEFMYRGKKFNMRKEDVQGDTYKGIKKFRFYMKCM
TCSREITFITDPEKMDYAMEHGAKRLFEVWKEQEKAEKEEGERRAEEEQQ
DAMKALEHRTIDSKLEMDILDALEETKVMGNKRDLIRGDRLVEIAGAQ
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mRNA from alignment at KK037247.1:613817..614733-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8119 ID=rna8119|Name=rna8119|organism=Nannochloropsis gaditana|type=mRNA|length=917bp|location=Sequence derived from alignment at KK037247.1:613817..614733- (Nannochloropsis gaditana)
ATGAGTTTCCCATTTTCCCCGCTCTTTCAAATCCCATTCACCTTCCCAAT
AGGCAAAATGGGTGAGCGCAAGGTGCTCAACAAGTATTTCCCTCCGGATT
TCGATCCGAATCTGGTGCCACGGACCAAATTCGACAAATTCAAGCAGATT
GAGACGCGGATGATGATTCCATTCAACATCCAGTGCGATACTTGCGGGGA
GTTTATGTACCGGGGGAAAAAATTCAACATGCGGTAGGTGGCAGAAGCAA
GCAGTACATTGTGTCTGACCAATCCTAATCATTCCCCATCATTTGTTCTT
TTTTTAACCCCGGCACCAAAAACCCGCTTTCGCTCCTTCCCTGTGGCTTC
CAGGAAGGAAGACGTCCAGGGGGACACGTACAAGGGGATTAAGAAGTTCC
GGTTTTACATGAAGTGCATGACCTGCTCGCGGGAGATCACCTTCATCACG
GACCCTGAAAAAATGGACTACGCGATGGAGCACGGTGCCAAGCGGCTGTT
CGAGGTCTGGAAGGAGCAAGAGAAGGCGGAGAAGGAGGAGGGGGAGCGAC
GGGCAGAGGAGGAGCAGCAGGACGCGATGAAGGCCTTGGAGCACCGGACC
ATCGACTCGAAGCTGGAGATGGACATTTTGGATGCGTTGGAGGAGACCAA
GGTGATGGGCAACAAGCGGGATCTGATTCGGGGGGATCGGCTGGTGGAGA
TGTACGGGGAGGGGCAGAGGGAGGGAGGGAAGGAGGGGGAGGAGGAGGAG
GAGGAGGAGGCGCGGCGGGCCTTTGCCTTGGCCAGGAAGGGGGGCGTGGG
GGGCTTGAAGAAGTTGGAGGATTCGGACGAGGAAGGAGGGGGGATGGGAG
GGAGGGAGGGAAAGAGGGCGCGAGGTACAGAACACGGGCTATTGGGCGCA
GCGCCGGGGCTCAGTGA
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Coding sequence (CDS) from alignment at KK037247.1:613817..614733-

>rna8119 ID=rna8119|Name=rna8119|organism=Nannochloropsis gaditana|type=CDS|length=1791bp|location=Sequence derived from alignment at KK037247.1:613817..614733- (Nannochloropsis gaditana)
CGCCGGGGCTCAGTGAGAAGGAAGACGTCCAGGGGGACACGTACAAGGGG
ATTAAGAAGTTCCGGTTTTACATGAAGTGCATGACCTGCTCGCGGGAGAT
CACCTTCATCACGGACCCTGAAAAAATGGACTACGCGATGGAGCACGGTG
CCAAGCGGCTGTTCGAGGTCTGGAAGGAGCAAGAGAAGGCGGAGAAGGAG
GAGGGGGAGCGACGGGCAGAGGAGGAGCAGCAGGACGCGATGAAGGCCTT
GGAGCACCGGACCATCGACTCGAAGCTGGAGATGGACATTTTGGATGCGT
TGGAGGAGACCAAGGTGATGGGCAACAAGCGGGATCTGATTCGGGGGGAT
CGGCTGGTGGAGATATGAGTTTCCCATTTTCCCCGCTCTTTCAAATCCCA
TTCACCTTCCCAATAGGCAAAATGGGTGAGCGCAAGGTGCTCAACAAGTA
TTTCCCTCCGGATTTCGATCCGAATCTGGTGCCACGGACCAAATTCGACA
AATTCAAGCAGATTGAGACGCGGATGATGATTCCATTCAACATCCAGTGC
GATACTTGCGGGGAGTTTATGTACCGGGGGAAAAAATTCAACATGCGCGC
CGGGGCTCAGTGAGAAGGAAGACGTCCAGGGGGACACGTACAAGGGGATT
AAGAAGTTCCGGTTTTACATGAAGTGCATGACCTGCTCGCGGGAGATCAC
CTTCATCACGGACCCTGAAAAAATGGACTACGCGATGGAGCACGGTGCCA
AGCGGCTGTTCGAGGTCTGGAAGGAGCAAGAGAAGGCGGAGAAGGAGGAG
GGGGAGCGACGGGCAGAGGAGGAGCAGCAGGACGCGATGAAGGCCTTGGA
GCACCGGACCATCGACTCGAAGCTGGAGATGGACATTTTGGATGCGTTGG
AGGAGACCAAGGTGATGGGCAACAAGCGGGATCTGATTCGGGGGGATCGG
CTGGTGGAGATATGAGTTTCCCATTTTCCCCGCTCTTTCAAATCCCATTC
ACCTTCCCAATAGGCAAAATGGGTGAGCGCAAGGTGCTCAACAAGTATTT
CCCTCCGGATTTCGATCCGAATCTGGTGCCACGGACCAAATTCGACAAAT
TCAAGCAGATTGAGACGCGGATGATGATTCCATTCAACATCCAGTGCGAT
ACTTGCGGGGAGTTTATGTACCGGGGGAAAAAATTCAACATGCGCGCCGG
GGCTCAGTGAGAAGGAAGACGTCCAGGGGGACACGTACAAGGGGATTAAG
AAGTTCCGGTTTTACATGAAGTGCATGACCTGCTCGCGGGAGATCACCTT
CATCACGGACCCTGAAAAAATGGACTACGCGATGGAGCACGGTGCCAAGC
GGCTGTTCGAGGTCTGGAAGGAGCAAGAGAAGGCGGAGAAGGAGGAGGGG
GAGCGACGGGCAGAGGAGGAGCAGCAGGACGCGATGAAGGCCTTGGAGCA
CCGGACCATCGACTCGAAGCTGGAGATGGACATTTTGGATGCGTTGGAGG
AGACCAAGGTGATGGGCAACAAGCGGGATCTGATTCGGGGGGATCGGCTG
GTGGAGATATGAGTTTCCCATTTTCCCCGCTCTTTCAAATCCCATTCACC
TTCCCAATAGGCAAAATGGGTGAGCGCAAGGTGCTCAACAAGTATTTCCC
TCCGGATTTCGATCCGAATCTGGTGCCACGGACCAAATTCGACAAATTCA
AGCAGATTGAGACGCGGATGATGATTCCATTCAACATCCAGTGCGATACT
TGCGGGGAGTTTATGTACCGGGGGAAAAAATTCAACATGCG
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Synonyms
Publications