rna8113, rna8113 (mRNA) Nannochloropsis gaditana

Overview
Namerna8113
Unique Namerna8113
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length870
Alignment locationKK037247.1:600952..602255 +

Link to JBrowse

Properties
Property NameValue
ProductNucleic acid-binding protein
Orig transcript idgnl|cribi|Naga_100155g5.10221.mrna
Orig protein idgnl|cribi|Naga_100155g5.10221
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:600952..602255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100155g5gene7857Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8113rna8113-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22580.1cds8089Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8113 ID=rna8113|Name=rna8113|organism=Nannochloropsis gaditana|type=mRNA|length=870bp
CTCCCTTTCTTGGCCAAAACATCTTTAAGGACCCGTGAGGCTTGTTGGTA
GTGGTCCATGCGCCTGAACGTGTAAAAATGTGGCGTGAGAGGGACGGGTG
GACGCCGGGGCTGGGGGTGGGGAGGTTCGCCTGTTCGTCGAGGCTGCGGG
ACTCCAAATTGATGGCACCCGTCCCATTGTTTGTACAGGTAATTCCACTC
ACTCCCGCCTAGCTATTGCATAGGTAGGCTTGCAAAGTCTCCATGCCGCC
TCTACGGGAGGGCCATGAGAGTTTTGACATCCCTCCGGACCGCGACCCCC
ATGCGCCTTCGTCATTCGAGCTTCAAAGCCCACGGTACCCGAAAGTCATC
GCGAAAAAGCACGCCAGCAGCAGCCTCCTCCATCCCAGCCCCTGGGCTGC
CAACGTTTTTCCGCATTCAGACGACAGCCTTGTGACCAGCAGTGTGAAAC
TTGGTAATCTTGCGACGGGCCTGGCGTTTACCTTGGCCGTGGCCCGCGGA
GGCCTCTCAGCTATTCTATCTCCTCATGCCCGACGCGCAGCTTTTGTGTA
CGGATTTGCCGCGACATTCCCATTATATCTCCCAGCATTTTTGATGGGTG
CATTTGCGGACCATGCGATGAGGAAGGCGCCGGGCAAGGGAGTGCGGCGG
ACACGGTCCTACGAGTACGATCTGCCTTAAAGCATGGCGTAGTTTGACGT
TGCGCGTTACAGAGGATTTTCGGATGAGATAGTGCATCAAGTCCGTGTCG
TATTAGTGGGTAGTCTAATCTCCCTGTAGTGGAGGAGGGGCGATCATGCC
ATGTACAAAAGAAGAAATCAAAAAGCAGGCAGCTGCAACGTACATCGATA
AAGGAAAAAAATGCTGGAAG
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protein sequence of rna8113

>rna8113-protein ID=rna8113-protein|Name=rna8113|organism=Nannochloropsis gaditana|type=polypeptide|length=160bp
MDSQQVKLVKVKSVEARTGSTGNVTQVRVEALSARVTSCACWNGSVMPVV
SDKLAALCGCTQTNHGGCEDFASEGFLSFSFSLICSDRDCGYHHSLGCDR
EEKCSGRPGLSIRKRKKECLSCGDKESLSGLVLLFCRKRRNLVLRWSKSR
TIKHNERFEG
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mRNA from alignment at KK037247.1:600952..602255+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8113 ID=rna8113|Name=rna8113|organism=Nannochloropsis gaditana|type=mRNA|length=1304bp|location=Sequence derived from alignment at KK037247.1:600952..602255+ (Nannochloropsis gaditana)
ATGGTACGTACCGAACGTTCTGCCCCCTGTCGTCCCAAACAACCTGAGCA
TTctcattctttcccccagCCCTTGCAACTGTACTTGACCTTAACTCGCC
TCTGTCGCCCTGTACATCGACAGGACTCGCAACAAGTCAAGCTTGTCAAG
GTCAAGTCCGTAGAAGCTCGCACAGGCAGCACAGGAAATGTCACGCAGGT
ACGATAGAGCGGAAACTGATGGAGGTCAGCAGAATTTCGGGGCACGGAAG
GAATCAATAAGTAGGATGTTTTTCCTGCTTTACTGGCTGGGCAGCTTTTT
AAAGCTCCCGTTGATACTTGAAAATGTGGACGATAAAGGGTTTCGGAAGA
CGTATGCAGGGGGTAGGCATTCGGGCACACCCATGCCTGATGTCTTgcgc
ccctccatcccctcagCATGTGCTCGATATGTTTCTCAAATTCTGCTTTT
GTTGCCCTTGACATTATCCATTTTGGCTTACGGGAGGACATGACACTCAT
TTGTCACTGTGACCGTGTCCTCTCGTATTTTTTGCAGGTGCGCGTGGAGT
TCCTGGACGACCCTACTCGTAGCATTCGGCGGAACGTGAAGGGCCCTGTC
CGCGAGGTAGGATTtcttggaagggaagggaggatgcgaAGCGAAAAGGA
CCATTTTTAGAAAAGGTCTTGCTGGAGAACAGAAGAGAGGGCTGGAGGTg
cgggatggaaggaagacgcGTGGGACAGAGACATGGGTCGAGAGGAGTGT
CCGTTTTGTTACACCAGTGTCGATGATTGAGCGGCTTCAAGAAATGTTGC
ATGTGGTCATTGCCCGCGACAATGGTGGTAGGACTGGTATGATACACCTT
ACAGGCGACGgcccaccccctccatgtcACGCCGTCTCACAGCCATTGCT
CTCTCTCACCCCTATGATACCACAGGGTGACGTCCTGTGCCTGTTGGAAT
GGGAGCGTGATGCCCGTCGTCTCCGATAAATTGGCAGCTCTATGCGGTTG
CACCCAAACCAACCATGGAGGGTGCGAAGACTTTGCGAGTGAAggtttcc
tttccttctctttctcgttGATTTGCTCGGACCGAGACTGTGGATATCAC
CACTCGTTGGGATGTGATAGGGAAGAAAAGTGTAGTGGAAGGCCAGGGTT
GTCAAtcagaaaaagaaagaaggaatgtCTCAGCTGCGGAGATAAAGAGT
CTTTGTCAGGGCTCGTATTGCTTTTTTGTCGAAAAAGACGCAATCTTGTT
TTACGTTGGTCAAAGAGTCGAACCATAAAACATAATGAACGATTCGAAGG
ATGA
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Coding sequence (CDS) from alignment at KK037247.1:600952..602255+

>rna8113 ID=rna8113|Name=rna8113|organism=Nannochloropsis gaditana|type=CDS|length=2415bp|location=Sequence derived from alignment at KK037247.1:600952..602255+ (Nannochloropsis gaditana)
ATGGACTCGCAACAAGTCAAGCTTGTCAAGGTCAAGTCCGTAGAAGCTCG
CACAGGCAGCACAGGAAATGTCACGCAGGTGCGCGTGGAGGCCCTGTCCG
CGAGGGTGACGTCCTGTGCCTGTTGGAATGGGAGCGTGATGCCCGTCGTC
TCCGATAAATTGGCAGCTCTATGCGGTTGCACCCAAACCAACCATGGAGG
GTGCGAAGACTTTGCGAGTGAAggtttcctttccttctctttctcgttGA
TTTGCTCGGACCGAGACTGTGGATATCACCACTCGTTGGGATGTGATAGG
GAAGAAAAGTGTAGTGGAAGGCCAGGGTTGTCAAtcagaaaaagaaagaa
ggaatgtCTCAGCTGCGGAGATAAAGAGTCTTTGTCAGGGCTCGTATTGC
TTTTTTGTCGAAAAAGACGCAATCTTGTTTTACGTTGGTCAAAGAGTCGA
ACCATAAAACATAATGAACGATTCGAAGGATGAATGGACTCGCAACAAGT
CAAGCTTGTCAAGGTCAAGTCCGTAGAAGCTCGCACAGGCAGCACAGGAA
ATGTCACGCAGGTGCGCGTGGAGGCCCTGTCCGCGAGGGTGACGTCCTGT
GCCTGTTGGAATGGGAGCGTGATGCCCGTCGTCTCCGATAAATTGGCAGC
TCTATGCGGTTGCACCCAAACCAACCATGGAGGGTGCGAAGACTTTGCGA
GTGAAggtttcctttccttctctttctcgttGATTTGCTCGGACCGAGAC
TGTGGATATCACCACTCGTTGGGATGTGATAGGGAAGAAAAGTGTAGTGG
AAGGCCAGGGTTGTCAAtcagaaaaagaaagaaggaatgtCTCAGCTGCG
GAGATAAAGAGTCTTTGTCAGGGCTCGTATTGCTTTTTTGTCGAAAAAGA
CGCAATCTTGTTTTACGTTGGTCAAAGAGTCGAACCATAAAACATAATGA
ACGATTCGAAGGATGAATGGACTCGCAACAAGTCAAGCTTGTCAAGGTCA
AGTCCGTAGAAGCTCGCACAGGCAGCACAGGAAATGTCACGCAGGTGCGC
GTGGAGGCCCTGTCCGCGAGGGTGACGTCCTGTGCCTGTTGGAATGGGAG
CGTGATGCCCGTCGTCTCCGATAAATTGGCAGCTCTATGCGGTTGCACCC
AAACCAACCATGGAGGGTGCGAAGACTTTGCGAGTGAAggtttcctttcc
ttctctttctcgttGATTTGCTCGGACCGAGACTGTGGATATCACCACTC
GTTGGGATGTGATAGGGAAGAAAAGTGTAGTGGAAGGCCAGGGTTGTCAA
tcagaaaaagaaagaaggaatgtCTCAGCTGCGGAGATAAAGAGTCTTTG
TCAGGGCTCGTATTGCTTTTTTGTCGAAAAAGACGCAATCTTGTTTTACG
TTGGTCAAAGAGTCGAACCATAAAACATAATGAACGATTCGAAGGATGAA
TGGACTCGCAACAAGTCAAGCTTGTCAAGGTCAAGTCCGTAGAAGCTCGC
ACAGGCAGCACAGGAAATGTCACGCAGGTGCGCGTGGAGGCCCTGTCCGC
GAGGGTGACGTCCTGTGCCTGTTGGAATGGGAGCGTGATGCCCGTCGTCT
CCGATAAATTGGCAGCTCTATGCGGTTGCACCCAAACCAACCATGGAGGG
TGCGAAGACTTTGCGAGTGAAggtttcctttccttctctttctcgttGAT
TTGCTCGGACCGAGACTGTGGATATCACCACTCGTTGGGATGTGATAGGG
AAGAAAAGTGTAGTGGAAGGCCAGGGTTGTCAAtcagaaaaagaaagaag
gaatgtCTCAGCTGCGGAGATAAAGAGTCTTTGTCAGGGCTCGTATTGCT
TTTTTGTCGAAAAAGACGCAATCTTGTTTTACGTTGGTCAAAGAGTCGAA
CCATAAAACATAATGAACGATTCGAAGGATGAATGGACTCGCAACAAGTC
AAGCTTGTCAAGGTCAAGTCCGTAGAAGCTCGCACAGGCAGCACAGGAAA
TGTCACGCAGGTGCGCGTGGAGGCCCTGTCCGCGAGGGTGACGTCCTGTG
CCTGTTGGAATGGGAGCGTGATGCCCGTCGTCTCCGATAAATTGGCAGCT
CTATGCGGTTGCACCCAAACCAACCATGGAGGGTGCGAAGACTTTGCGAG
TGAAggtttcctttccttctctttctcgttGATTTGCTCGGACCGAGACT
GTGGATATCACCACTCGTTGGGATGTGATAGGGAAGAAAAGTGTAGTGGA
AGGCCAGGGTTGTCAAtcagaaaaagaaagaaggaatgtCTCAGCTGCGG
AGATAAAGAGTCTTTGTCAGGGCTCGTATTGCTTTTTTGTCGAAAAAGAC
GCAATCTTGTTTTACGTTGGTCAAAGAGTCGAACCATAAAACATAATGAA
CGATTCGAAGGATGA
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Synonyms
Publications