EWM22580.1, cds8089 (CDS) Nannochloropsis gaditana

Overview
NameEWM22580.1
Unique Namecds8089
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:600952..600954 +
Alignment locationKK037247.1:601075..601149 +
Alignment locationKK037247.1:601489..601499 +
Alignment locationKK037247.1:601543..601557 +
Alignment locationKK037247.1:601877..602255 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22580.1
ProductNucleic acid-binding protein
Orig transcript idgnl|cribi|Naga_100155g5.10221.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:600952..600954 +
KK037247.1supercontigKK037247.1:601075..601149 +
KK037247.1supercontigKK037247.1:601489..601499 +
KK037247.1supercontigKK037247.1:601543..601557 +
KK037247.1supercontigKK037247.1:601877..602255 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR000289Ribosomal_S28e
Homology
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BLAST of EWM22580.1 vs. NCBI_GenBank
Match: gi|585103141|gb|EWM22580.1| (Nucleic acid-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 324.709 bits (831), Expect = 2.403e-112
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 
Query:    1 MDSQQVKLVKVKSVEARTGSTGNVTQVRVEALSARVTSCACWNGSVMPVVSDKLAALCGCTQTNHGGCEDFASEGFLSFSFSLICSDRDCGYHHSLGCDREEKCSGRPGLSIRKRKKECLSCGDKESLSGLVLLFCRKRRNLVLRWSKSRTIKHNERFEG 160
            MDSQQVKLVKVKSVEARTGSTGNVTQVRVEALSARVTSCACWNGSVMPVVSDKLAALCGCTQTNHGGCEDFASEGFLSFSFSLICSDRDCGYHHSLGCDREEKCSGRPGLSIRKRKKECLSCGDKESLSGLVLLFCRKRRNLVLRWSKSRTIKHNERFEG
Sbjct:    1 MDSQQVKLVKVKSVEARTGSTGNVTQVRVEALSARVTSCACWNGSVMPVVSDKLAALCGCTQTNHGGCEDFASEGFLSFSFSLICSDRDCGYHHSLGCDREEKCSGRPGLSIRKRKKECLSCGDKESLSGLVLLFCRKRRNLVLRWSKSRTIKHNERFEG 160
The following BLAST results are available for this feature:
BLAST of EWM22580.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585103141|gb|EWM22580.1|2.403e-112100.00Nucleic acid-binding protein [Nannochloropsis gadi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8113rna8113Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications