rna8100, rna8100 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8100
Unique Name	rna8100
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1884
Alignment location	KK037247.1:559738..561012 -

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Properties


Property Name	Value
Product	peptide methionine sulfoxide reductase
Orig transcript id	gnl\|cribi\|Naga_100126g3.3037.mrna
Orig protein id	gnl\|cribi\|Naga_100126g3.3037
Gene	msr
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:559738..561012 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
msr	gene7844	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8100	rna8100-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22611.1	cds8078	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:559738..561012-
coding sequence from alignment at KK037247.1:559738..561012-

mRNA sequence

>rna8100 ID=rna8100|Name=rna8100|organism=Nannochloropsis gaditana|type=mRNA|length=1884bp
ATGACGAAGATCCAGAAAAAGAAAAGTGTAGAAAGCAAGTATAGAAAGTG
GAAGGGATATGGTGCCAAAGCCATTTATGCGAACATGGCTTTCTTCAGGG
ACCATGGTCTCTTGTCGCGCCTAGTGGGCATGACAGGTCATGCCCAGGAC
CATCACCACCAGGATGGGCATCGTGACCCCCCAAGCTTCCCAATACAAGA
AGGCAGGGCCATCTGGGGGTTCTTACTAGCTTTTTTGGCTTATTGGCTCT
CTCATAGATTCGTGTACGTGGAGAACGATCCTGGAGCTTTAGCACGAGCA
AGTGCCCGGGGAGAGCGTGTGGAATGGTCCTCTTTCGACAAGTTTTACAA
GCAAGCTCCTACTCTCTTTTTGCAACCGTCAAATCACGAGGAGCTCATTG
GTATACTCCGAGAAGCCGCTGCCAGCAACCAGACAGTCAAAGTGGTTGGG
TCCGGACACTCCTGGACTCCTATCGGCCTCACGGACGGGGTCATGCTTAA
TCTTGATAAATTCAATAAAGTCCTTTCAATCGACGCCTCTGCCAAAACAG
TGACTGTGCAAGCCGGGATTCGCATTCGAGACTTGAGCGCGGCCCTTGCT
GCACACGATCCCCCACTAGCGCTCCGAAACACGGGTGTCCTCGACCGTCA
GTCATTAGCAGGAGCTTTGGCCACAGGAACGCATGGCACCGGGATCAGAT
ATAAGATTATGTCCGCAGATGTAGTGGCTCTAGAGCTCGTCACGGCCGGG
GGAAACGTGCTGCGGGGGAGCCGGAGGGATCCGGACCCGGCAATGCGCGA
TATGTTTGAGGCAGCGGTACTGCATTTGGGCGCCTTAGGCGTGCTCACAG
AAGTGAGCATGGAAGTGGTTGAGGCATTTTCCGTCATCAAACGCAATCGC
TTGTTGCCTCTCAACACGGTGCTCAGCACACTACCAGCATTGGCTGCGGG
TGTGGATCACTTGTTGGTGTGGTTCATTCCCTACACGGGGAGGGCGCAGC
TCATGGAGAGCCTTCGGATTCCGCCCACCAAGGTGCCTCCCACGCACGAC
TGGGGCGATAGCCGCAAGCACTGCCAGAATTTCGGCTCCACGAGCGGTGA
TGAGGCCAGCGCCGCGCAGAGTGGATCTTTAATGCTGTCTCTTACTTATA
ACAAAGTCGTCGCCAGCCTCAGGTCCTTCTCAGCATCCCTCCTCCTGGCC
TCTCGGCCCTGGCTAGGTGTTCTTCAGCTGCGCCTTCTGAGTGCGGCAGG
CTCTTTCTCTAGCCTCTTTCCTGTTACGTACGTCCCCTTCTGGAACCGGC
AGGTCGTCGCCCCCGCCCTCCATCTCTTCGCGTGGGGGGAGTCGTTCTAT
CCCCACGGCCACCGCGGCATCGTCCTAGACGACCACCCGGACTGCTACAG
GGAGGCCGAGTGGTTCCTGCCCTTGGAGAGCTTCAACGCAGCCATGACAG
CATTCCTTACTTTCTTGGACTCGCGCCGAGGGAAAATTGGCGCGAATTTC
GTCGTGCAAATCCGCGTGACCCATGCCGACGATCTCTGGTTGAGTCCATT
TCGAAGGGAACAGGGGCCGCAAAACAACAGCCACGACAATACTGGGCAAG
ACAAGACGATGTCGGATAGCATCTCGTGGTTTGTCTCCGTTGCCACGCTC
GTGAAAGGCTTCGACAGTGATCCTTATCTCAGGGCGGCAGAGAGGGAAGT
GTGGATCCCCAACGGGGGGAGGCCGCATTGGGGTAAACTGCACTACTTGG
CTTACCATGAACTGAGTGCCCTGTACGGCGAACCTTTCGAGAAATATCTG
AGGGTACGACGCCGACTGGACCCTCAAGACATGTTCATGAATTCACACCT
GCGCGAGCTCTTTTTTGAACGCGCGGTTCGATGA

protein sequence of rna8100

>rna8100-protein ID=rna8100-protein|Name=rna8100|organism=Nannochloropsis gaditana|type=polypeptide|length=367bp
MRATSILASATVIGVASKGVRAFQYPVSRSLTQLVGAGSYASAVPTLNKN
SGPIHLKRDGVRRYLWNSIFNAAGKGDGIDYSTLTGMEAKEAAELALKGV
VQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYD
YVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQ
YRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPATVYWPAEEYHQK
YLEKGGRFSAGQSAAKGCTDPIRCYGREIFFLGKVDVGSVETTYSMNECD
CEASEVLARASTRATVKRVPLLWVEPKLENRARPLFLLADLSEFVYVQTD
NFTVRKKRKKEFVVNFL

mRNA from alignment at KK037247.1:559738..561012-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8100 ID=rna8100|Name=rna8100|organism=Nannochloropsis gaditana|type=mRNA|length=1275bp|location=Sequence derived from alignment at KK037247.1:559738..561012- (Nannochloropsis gaditana)
ATGAGGGCAACTTCTATTCTGGCCTCTGCTACTGTTATAGGCGTCGCGTC
CAAAGGTGTACGCGCGTTCCAATATCCGGTATCGCGCTCTCTGACCCAGC
TTGTCGGAGCAGGAAGCTATGCGTCCGCGGTACCTACTTTAAACAAAAAT
TCGGGCCCGATCCATCTTAAACGAGATGGAGTGAGGCGTTATCTGTGGAA
CAGCATCTTTAATGCTGCTGGGAAGGGCGACGGCATTGATTATTCCACCC
TGACTGGAATGGAGGCTAAGGAAGCTGCCGAGCTTGCCCTCAAGGGCGTC
GTCCAGGATAAGAGCAAAGATGGATACGAGATTGCCACCTTCGCAGGAGG
ATGCTTTTGGGGTCTCGAGCTAGCTTATCAGCGGGTCGTGGGTGTGATAG
ACACCTCAGTAGGCTATACCCAGGGGAAAGATGAAAAGCCAACGTATGAC
TACGTCTGCTCTGGCATGAGCGGGCATACGGAAGCGGTGCAAGTTTTCTT
CGACCCAAAGGAGGTGTCATACGAGTATTTGTGCAAGTTACTCTTGACTC
GCATCAATCCTACTTTAAAAAATCAAGTAGGGAACGATCGTGGTGCGTTT
TCCATAAGATCGACTAATGCAGCTGAGCGATGTCTTCCTTCCAACCGGCG
TACCCCATGTTTCGTAATTCTCACAAAAATTTCACCCAAATCATTCAATT
TTTTATCTGTACTTTTACAGGGACACAATACCGACACGGCATCTATTACC
ACAACGAAGGGCAGGAGAAGGTGGCAAAGAAAGTTCTCGAAGAAGCCCAG
GCGCAATTTAGCAAGCCGATCGTTACAGAGTGCCTCCCCGCCACTGTGTA
TTGGCCTGCAGAGGAATACCATCAGAAGTACTTGGAAAAAGGTGGGCGAT
TTTCAGCAGGGCAGTCGGCGGCAAAAGGGTGCACTGATCCTATCCGATGC
TATGGGTAGATGGGACAACAAAACGGAAAGCCGCGGGGAGAGAGGGAGGC
GGGAGATTTTTTTCCTGGGAAAGGTGGATGTAGGCAGCGTTGAGACAACT
TATTCGATGAATGAATGCGATTGTGAGGCTAGTGAGGTGTTGGCTCGAGC
CTCAACGCGTGCAACGGTGAAACGTGTGCCTTTGCTTTGGGTAGAGCCCA
AACTGGAAAACAGGGCTCGGCCGTTGTTTCTACTCGCGGACCTCTCAGAA
TTCGTGTATGTTCAGACAGATAATTTTACGGTGCGAAAGAAACGGAAAAA
AGAGTTCGTCGTAAATTTCTTATAG

Coding sequence (CDS) from alignment at KK037247.1:559738..561012-

>rna8100 ID=rna8100|Name=rna8100|organism=Nannochloropsis gaditana|type=CDS|length=3312bp|location=Sequence derived from alignment at KK037247.1:559738..561012- (Nannochloropsis gaditana)
GCGGGAGATTTTTTTCCTGGGAAAGGTGGATGTAGGCAGCGTTGAGACAA
CTTATTCGATGAATGAATGCGATTGTGAGGCTAGTGAGGTGTTGGCTCGA
GCCTCAACGCGTGCAACGGTGAAACGTGTGCCTTTGCTTTGGGTAGAGCC
CAAACTGGAAAACAGGGCTCGGCCGTTGTTTCTACTCGCGGACCTCTCAG
AATTCGTGTATGTTCAGACAGATAATTTTACGGTGCGAAAGAAACGGAAA
AAAGAGTTCGTCGTAAATTTCTTATAGGGACACAATACCGACACGGCATC
TATTACCACAACGAAGGGCAGGAGAAGGTGGCAAAGAAAGTTCTCGAAGA
AGCCCAGGCGCAATTTAGCAAGCCGATCGTTACAGAGTGCCTCCCCGCCA
CTGTGTATTGGCCTGCAGAGGAATACCATCAGAAGTACTTGGAAAAAGGT
GGGCGATTTTCAGCAGGGCAGTCGGCGGCAAAAGGGTGCACTGATCCTAT
CCGATGCTATGGATGAGGGCAACTTCTATTCTGGCCTCTGCTACTGTTAT
AGGCGTCGCGTCCAAAGGTGTACGCGCGTTCCAATATCCGGTATCGCGCT
CTCTGACCCAGCTTGTCGGAGCAGGAAGCTATGCGTCCGCGGTACCTACT
TTAAACAAAAATTCGGGCCCGATCCATCTTAAACGAGATGGAGTGAGGCG
TTATCTGTGGAACAGCATCTTTAATGCTGCTGGGAAGGGCGACGGCATTG
ATTATTCCACCCTGACTGGAATGGAGGCTAAGGAAGCTGCCGAGCTTGCC
CTCAAGGGCGTCGTCCAGGATAAGAGCAAAGATGGATACGAGATTGCCAC
CTTCGCAGGAGGATGCTTTTGGGGTCTCGAGCTAGCTTATCAGCGGGTCG
TGGGTGTGATAGACACCTCAGTAGGCTATACCCAGGGGAAAGATGAAAAG
CCAACGTATGACTACGTCTGCTCTGGCATGAGCGGGCATACGGAAGCGGT
GCAAGTTTTCTTCGACCCAAAGGAGGTGTCATACGAGTATTTGTGCAAGT
TACTCTTGACTCGCATCAATCCTACTTTAAAAAATCAAGTAGGGAACGAT
CGTGGCGGGAGATTTTTTTCCTGGGAAAGGTGGATGTAGGCAGCGTTGAG
ACAACTTATTCGATGAATGAATGCGATTGTGAGGCTAGTGAGGTGTTGGC
TCGAGCCTCAACGCGTGCAACGGTGAAACGTGTGCCTTTGCTTTGGGTAG
AGCCCAAACTGGAAAACAGGGCTCGGCCGTTGTTTCTACTCGCGGACCTC
TCAGAATTCGTGTATGTTCAGACAGATAATTTTACGGTGCGAAAGAAACG
GAAAAAAGAGTTCGTCGTAAATTTCTTATAGGGACACAATACCGACACGG
CATCTATTACCACAACGAAGGGCAGGAGAAGGTGGCAAAGAAAGTTCTCG
AAGAAGCCCAGGCGCAATTTAGCAAGCCGATCGTTACAGAGTGCCTCCCC
GCCACTGTGTATTGGCCTGCAGAGGAATACCATCAGAAGTACTTGGAAAA
AGGTGGGCGATTTTCAGCAGGGCAGTCGGCGGCAAAAGGGTGCACTGATC
CTATCCGATGCTATGGATGAGGGCAACTTCTATTCTGGCCTCTGCTACTG
TTATAGGCGTCGCGTCCAAAGGTGTACGCGCGTTCCAATATCCGGTATCG
CGCTCTCTGACCCAGCTTGTCGGAGCAGGAAGCTATGCGTCCGCGGTACC
TACTTTAAACAAAAATTCGGGCCCGATCCATCTTAAACGAGATGGAGTGA
GGCGTTATCTGTGGAACAGCATCTTTAATGCTGCTGGGAAGGGCGACGGC
ATTGATTATTCCACCCTGACTGGAATGGAGGCTAAGGAAGCTGCCGAGCT
TGCCCTCAAGGGCGTCGTCCAGGATAAGAGCAAAGATGGATACGAGATTG
CCACCTTCGCAGGAGGATGCTTTTGGGGTCTCGAGCTAGCTTATCAGCGG
GTCGTGGGTGTGATAGACACCTCAGTAGGCTATACCCAGGGGAAAGATGA
AAAGCCAACGTATGACTACGTCTGCTCTGGCATGAGCGGGCATACGGAAG
CGGTGCAAGTTTTCTTCGACCCAAAGGAGGTGTCATACGAGTATTTGTGC
AAGTTACTCTTGACTCGCATCAATCCTACTTTAAAAAATCAAGTAGGGAA
CGATCGTGGCGGGAGATTTTTTTCCTGGGAAAGGTGGATGTAGGCAGCGT
TGAGACAACTTATTCGATGAATGAATGCGATTGTGAGGCTAGTGAGGTGT
TGGCTCGAGCCTCAACGCGTGCAACGGTGAAACGTGTGCCTTTGCTTTGG
GTAGAGCCCAAACTGGAAAACAGGGCTCGGCCGTTGTTTCTACTCGCGGA
CCTCTCAGAATTCGTGTATGTTCAGACAGATAATTTTACGGTGCGAAAGA
AACGGAAAAAAGAGTTCGTCGTAAATTTCTTATAGGGACACAATACCGAC
ACGGCATCTATTACCACAACGAAGGGCAGGAGAAGGTGGCAAAGAAAGTT
CTCGAAGAAGCCCAGGCGCAATTTAGCAAGCCGATCGTTACAGAGTGCCT
CCCCGCCACTGTGTATTGGCCTGCAGAGGAATACCATCAGAAGTACTTGG
AAAAAGGTGGGCGATTTTCAGCAGGGCAGTCGGCGGCAAAAGGGTGCACT
GATCCTATCCGATGCTATGGATGAGGGCAACTTCTATTCTGGCCTCTGCT
ACTGTTATAGGCGTCGCGTCCAAAGGTGTACGCGCGTTCCAATATCCGGT
ATCGCGCTCTCTGACCCAGCTTGTCGGAGCAGGAAGCTATGCGTCCGCGG
TACCTACTTTAAACAAAAATTCGGGCCCGATCCATCTTAAACGAGATGGA
GTGAGGCGTTATCTGTGGAACAGCATCTTTAATGCTGCTGGGAAGGGCGA
CGGCATTGATTATTCCACCCTGACTGGAATGGAGGCTAAGGAAGCTGCCG
AGCTTGCCCTCAAGGGCGTCGTCCAGGATAAGAGCAAAGATGGATACGAG
ATTGCCACCTTCGCAGGAGGATGCTTTTGGGGTCTCGAGCTAGCTTATCA
GCGGGTCGTGGGTGTGATAGACACCTCAGTAGGCTATACCCAGGGGAAAG
ATGAAAAGCCAACGTATGACTACGTCTGCTCTGGCATGAGCGGGCATACG
GAAGCGGTGCAAGTTTTCTTCGACCCAAAGGAGGTGTCATACGAGTATTT
GTGCAAGTTACTCTTGACTCGCATCAATCCTACTTTAAAAAATCAAGTAG
GGAACGATCGTG

Synonyms

Publications