EWM22611.1, cds8078 (CDS) Nannochloropsis gaditana

Overview
NameEWM22611.1
Unique Namecds8078
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:560421..561012 -
Alignment locationKK037247.1:560058..560292 -
Alignment locationKK037247.1:559738..560014 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22611.1
Productpeptide methionine sulfoxide reductase
Orig transcript idgnl|cribi|Naga_100126g3.3037.mrna
Genemsr
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:560421..561012 -
KK037247.1supercontigKK037247.1:560058..560292 -
KK037247.1supercontigKK037247.1:559738..560014 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0009987cellular process
GO:0019538protein metabolic process
GO:0030091protein repair
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016671oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
GO:0008113peptide-methionine (S)-S-oxide reductase activity
Vocabulary: INTERPRO
TermDefinition
IPR028427Met_Sox_Rdtase
IPR002569Met_Sox_Rdtase_MsrA
Homology
BLAST of EWM22611.1 vs. NCBI_GenBank
Match: gi|585103174|gb|EWM22611.1| (peptide methionine sulfoxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 761.911 bits (1966), Expect = 0.000e+0
Identity = 367/367 (100.00%), Postives = 367/367 (100.00%), Query Frame = 0
Query:    1 MRATSILASATVIGVASKGVRAFQYPVSRSLTQLVGAGSYASAVPTLNKNSGPIHLKRDGVRRYLWNSIFNAAGKGDGIDYSTLTGMEAKEAAELALKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPATVYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCYGREIFFLGKVDVGSVETTYSMNECDCEASEVLARASTRATVKRVPLLWVEPKLENRARPLFLLADLSEFVYVQTDNFTVRKKRKKEFVVNFL 367
            MRATSILASATVIGVASKGVRAFQYPVSRSLTQLVGAGSYASAVPTLNKNSGPIHLKRDGVRRYLWNSIFNAAGKGDGIDYSTLTGMEAKEAAELALKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPATVYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCYGREIFFLGKVDVGSVETTYSMNECDCEASEVLARASTRATVKRVPLLWVEPKLENRARPLFLLADLSEFVYVQTDNFTVRKKRKKEFVVNFL
Sbjct:    1 MRATSILASATVIGVASKGVRAFQYPVSRSLTQLVGAGSYASAVPTLNKNSGPIHLKRDGVRRYLWNSIFNAAGKGDGIDYSTLTGMEAKEAAELALKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPATVYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCYGREIFFLGKVDVGSVETTYSMNECDCEASEVLARASTRATVKRVPLLWVEPKLENRARPLFLLADLSEFVYVQTDNFTVRKKRKKEFVVNFL 367          
BLAST of EWM22611.1 vs. NCBI_GenBank
Match: gi|57335901|emb|CAH25352.1| (putative methionine sulfoxide reductase, partial [Guillardia theta])

HSP 1 Score: 243.047 bits (619), Expect = 5.585e-76
Identity = 124/220 (56.36%), Postives = 162/220 (73.64%), Query Frame = 0
Query:   59 DGVRRYLWNSIFNAAGKGDGIDYSTL-TGMEAKEAAELALKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFS-KPIVTECLPATVYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCYG 276
             G R  L  S+F  +GK    +YS L  G  A EAAE A +G V+  SK G+ IATF GGCFWG+EL YQRV GV+ T+VGY QG+ E P+Y+ VC+G +GHTE VQ+ ++PKEVS++ LC++L  +INP+LK+QVGNDRG+QYRHGIY+H   Q+  A++ ++E +A+ +  P  TE   A V++PAEEYHQ+YLEKGGRF + QSAAKGC DPIRCYG
Sbjct:    4 QGTRMGLLGSLFGGSGK---REYSDLKAGTWAAEAAEYAKEGQVKSVSKAGHSIATFGGGCFWGIELVYQRVPGVVATAVGYAQGELEHPSYEMVCTGATGHTEVVQLTYNPKEVSFKQLCQVLFGKINPSLKDQVGNDRGSQYRHGIYFHTPEQKAEAEEAIQEVKAKLNGAPFYTELEAAKVFYPAEEYHQQYLEKGGRFGSKQSAAKGCNDPIRCYG 220          
BLAST of EWM22611.1 vs. NCBI_GenBank
Match: gi|551676385|ref|XP_005840946.1| (hypothetical protein GUITHDRAFT_100216 [Guillardia theta CCMP2712] >gi|428185113|gb|EKX53966.1| hypothetical protein GUITHDRAFT_100216 [Guillardia theta CCMP2712])

HSP 1 Score: 239.965 bits (611), Expect = 5.677e-75
Identity = 122/214 (57.01%), Postives = 160/214 (74.77%), Query Frame = 0
Query:   65 LWNSIFNAAGKGDGIDYSTL-TGMEAKEAAELALKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFS-KPIVTECLPATVYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCYG 276
            L  S+F  +GK    +YS L  G  A EAAE A +G V+  SK G+ IATF GGCFWG+EL YQRV GV+ T+VGY QG+ E P+Y+ VC+G +GHTE VQ+ ++PKEVS++ LC++L  +INP+LK+QVGNDRG+QYRHGIY+H   Q+  A++ ++E +A+ +  P  TE   A V++PAEEYHQ+YLEKGGRF + QSAAKGC DPIRCYG
Sbjct:    3 LLGSLFGGSGK---REYSDLKAGTWAAEAAEYAKEGQVKSVSKAGHSIATFGGGCFWGIELVYQRVPGVVATAVGYAQGELEHPSYEMVCTGATGHTEVVQLTYNPKEVSFKQLCQVLFGKINPSLKDQVGNDRGSQYRHGIYFHTPEQKAEAEEAIQEVKAKLNGAPFYTELEAAKVFYPAEEYHQQYLEKGGRFGSKQSAAKGCNDPIRCYG 213          
BLAST of EWM22611.1 vs. NCBI_GenBank
Match: gi|553192018|ref|XP_005855498.1| (peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >gi|553195423|ref|XP_005856143.1| peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >gi|422292910|gb|EKU20211.1| peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >gi|422293556|gb|EKU20856.1| peptide methionine sulfoxide reductase [Nannochloropsis gaditana CCMP526] >gi|585110204|gb|EWM27874.1| peptide methionine sulfoxide reductase [Nannochloropsis gaditana])

HSP 1 Score: 237.269 bits (604), Expect = 4.729e-74
Identity = 115/196 (58.67%), Postives = 140/196 (71.43%), Query Frame = 0
Query:   81 YSTLTGMEAKEAAELALKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPATVYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCYG 276
            Y  L+G+ A EA++ AL   V   S DG+ IATFAGGCFWG+ELA+QRV GV+ T  GYTQG   +P+Y  VCSG +GHTEA+QV F P EVSYE L K+   RI+P ++N  G DRGTQYR GIY H + Q + A +  E  Q ++S+PI+TE  PA V+WPAE  HQ YL KGGRF + QSAAKGCTDPIRCYG
Sbjct:    6 YQQLSGL-ALEASKAALADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200          
BLAST of EWM22611.1 vs. NCBI_GenBank
Match: gi|298708882|emb|CBJ30839.1| (methionine sulfoxide reductase [Ectocarpus siliculosus])

HSP 1 Score: 231.106 bits (588), Expect = 2.273e-70
Identity = 110/179 (61.45%), Postives = 131/179 (73.18%), Query Frame = 0
Query:   97 LKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPATVYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCY 275
            LKG V  KS+ G++IATFAGGCFWGLELA+QRV GV+ TSVGYTQG  EKPTY  VCSG +GHTEAVQV+++P EVS+E LC +   RINPT  N  G DRGTQYR G+Y H +GQ  VA KV++  +  + +PI TE   A VYWPAE YHQ+YL KGG     Q+A KG T+ IRCY
Sbjct:  106 LKGEVPSKSEAGHDIATFAGGCFWGLELAFQRVPGVVATSVGYTQGAVEKPTYGEVCSGSTGHTEAVQVYYNPSEVSFEELCGVFFGRINPTQVNGQGGDRGTQYRTGVYPHTKGQSDVALKVVDGLRGNYKQPIATEIEGAKVYWPAELYHQQYLPKGGPNGMAQNAEKGATETIRCY 284          
BLAST of EWM22611.1 vs. NCBI_GenBank
Match: gi|551553186|ref|XP_005763917.1| (putative peptide methione-S-sulfoxide reductase [Emiliania huxleyi CCMP1516] >gi|551576958|ref|XP_005774122.1| methionine sulfoxide reductase [Emiliania huxleyi CCMP1516] >gi|485613444|gb|EOD11488.1| putative peptide methione-S-sulfoxide reductase [Emiliania huxleyi CCMP1516] >gi|485625893|gb|EOD21693.1| methionine sulfoxide reductase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 225.328 bits (573), Expect = 3.290e-69
Identity = 109/207 (52.66%), Postives = 150/207 (72.46%), Query Frame = 0
Query:   78 GIDYSTLTGME-------AKEAAELALKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFS-KPIVTECLPATVYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCYG 276
            G+DY  L G          +EA + AL+  V   S DG+E+AT AGGCFWG+EL  QR+ GV+ T VGYTQG+  +PTYD VC G +GHTEAVQ+ +DP+ ++Y  +C+ LL  ++PT  ++VGND G+QYRHGIYYH++ Q  VA+  + +AQA+   + +VTE  PATV+WPAE++HQ+YL++GGRF + QSAAKGC+D +RCYG
Sbjct:    5 GVDYEKLGGRGYGSIKSWGREAGQFALRDEVPSTSSDGFEVATVAGGCFWGIELRLQRLDGVVATCVGYTQGRTREPTYDDVCGGGTGHTEAVQLIYDPEVLAYSTICETLLASLDPTAVDRVGNDYGSQYRHGIYYHSDKQRGVAEAAIADAQARAGRRKVVTEVRPATVFWPAEQHHQQYLQRGGRFGSPQSAAKGCSDRVRCYG 211          
BLAST of EWM22611.1 vs. NCBI_GenBank
Match: gi|676379919|ref|XP_009033238.1| (hypothetical protein AURANDRAFT_20277 [Aureococcus anophagefferens] >gi|323456290|gb|EGB12157.1| hypothetical protein AURANDRAFT_20277 [Aureococcus anophagefferens])

HSP 1 Score: 222.631 bits (566), Expect = 4.929e-68
Identity = 119/220 (54.09%), Postives = 143/220 (65.00%), Query Frame = 0
Query:   68 SIFNAAG-----KGDGIDYSTLTGME---AKEAAELALKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRI--NPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPAT-VYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCYG 276
            S+F+AAG     +   I Y+ L G+    A EA + AL G    KS DGY IATFA GCFWG+EL +QR+ GVI TSVGY QG  +KPTY+ V +  SGHTEAVQ+ +DP  +SY  LC+    R+        QVGNDRG QYR GIY     Q  VA+K L +AQ +F+ PI TE  P   VYWPAE YHQ+YLE GGRF++ QSAAKG T PIRCYG
Sbjct:    2 SVFSAAGALWTTRSKEIPYAELPGLPQSFALEAGKNALAGTTPVKSADGYAIATFAAGCFWGVELEFQRLPGVIATSVGYVQGHKQKPTYEEVSAATSGHTEAVQLIYDPGVISYARLCEAFWARLGDGAVRYQQVGNDRGPQYRSGIYTTTSAQLDVARKSLVDAQKKFASPIQTEVEPMRGVYWPAEAYHQRYLELGGRFNSPQSAAKGDTTPIRCYG 221          
BLAST of EWM22611.1 vs. NCBI_GenBank
Match: gi|551542701|ref|XP_005759537.1| (methionine sulfoxide reductase, partial [Emiliania huxleyi CCMP1516] >gi|551602919|ref|XP_005782997.1| hypothetical protein EMIHUDRAFT_57356, partial [Emiliania huxleyi CCMP1516] >gi|485607664|gb|EOD07108.1| methionine sulfoxide reductase, partial [Emiliania huxleyi CCMP1516] >gi|485635942|gb|EOD30568.1| hypothetical protein EMIHUDRAFT_57356, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 219.935 bits (559), Expect = 8.168e-68
Identity = 101/169 (59.76%), Postives = 127/169 (75.15%), Query Frame = 0
Query:  108 GYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPATVYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCYG 276
            G+E+ATFAGGCFWG EL +QR+ GV+ T VGYTQG    PTY+ VCSG +GHTEA+Q+ FDP E SYE LC  LL+ ++PT +N+VGNDRGTQYRHGIY H   Q + A++ LE  QA+ S P+VTE LPA V++PAE YHQ+YL+KG     GQ+AAK   + +RCYG
Sbjct:    1 GFEVATFAGGCFWGTELHFQRIPGVVATCVGYTQGGVPAPTYEQVCSGTTGHTEALQLLFDPSECSYESLCAKLLSTVDPTARNRVGNDRGTQYRHGIYSHTPEQAEAARRALELEQAKQSAPVVTEMLPARVFYPAENYHQRYLQKG-----GQNAAKNAPEKVRCYG 164          
BLAST of EWM22611.1 vs. NCBI_GenBank
Match: gi|302772769|ref|XP_002969802.1| (hypothetical protein SELMODRAFT_227932 [Selaginella moellendorffii] >gi|300162313|gb|EFJ28926.1| hypothetical protein SELMODRAFT_227932 [Selaginella moellendorffii])

HSP 1 Score: 216.083 bits (549), Expect = 3.154e-66
Identity = 102/166 (61.45%), Postives = 123/166 (74.10%), Query Frame = 0
Query:  111 IATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPATVYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCYG 276
            +ATFA GCFW +ELA+QR+ GVI T+VGYTQG  E PTY  VC+G +GH EAV V +DPKEVSY  L      + +PT  +  GND G+QYR GIY+H   QEK+AK+ LE+ Q +  K IVTE LPAT ++PAE+YHQ+YLEKGGR    QSAAKGCTDPIRCYG
Sbjct:    1 MATFAAGCFWSVELAFQRIPGVIKTTVGYTQGSKESPTYHDVCTGRTGHAEAVLVEYDPKEVSYTALLDAFWKKHDPTQADGQGNDLGSQYRSGIYFHTPEQEKLAKQSLEQEQQRLGKKIVTELLPATTFYPAEDYHQQYLEKGGRGGRKQSAAKGCTDPIRCYG 166          
BLAST of EWM22611.1 vs. NCBI_GenBank
Match: gi|302806812|ref|XP_002985137.1| (hypothetical protein SELMODRAFT_121679 [Selaginella moellendorffii] >gi|300146965|gb|EFJ13631.1| hypothetical protein SELMODRAFT_121679 [Selaginella moellendorffii])

HSP 1 Score: 215.698 bits (548), Expect = 4.180e-66
Identity = 102/166 (61.45%), Postives = 123/166 (74.10%), Query Frame = 0
Query:  111 IATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPATVYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCYG 276
            +ATFA GCFW +ELA+QR+ GVI T+VGYTQG  E PTY  VC+G +GH EAV V +DPKEVSY  L      + +PT  +  GND G+QYR GIY+H   QEK+AK+ LE+ Q +  K IVTE LPAT ++PAE+YHQ+YLEKGGR    QSAAKGCTDPIRCYG
Sbjct:    1 MATFAAGCFWSVELAFQRIPGVIKTTVGYTQGSKESPTYHDVCTGRTGHAEAVLVEYDPKEVSYTALLDAFWKKHDPTQADGQGNDIGSQYRSGIYFHTPEQEKLAKQSLEQEQQRLGKKIVTELLPATTFYPAEDYHQQYLEKGGRGGRKQSAAKGCTDPIRCYG 166          
The following BLAST results are available for this feature:
BLAST of EWM22611.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103174|gb|EWM22611.1|0.000e+0100.00peptide methionine sulfoxide reductase [Nannochlor... [more]
gi|57335901|emb|CAH25352.1|5.585e-7656.36putative methionine sulfoxide reductase, partial [... [more]
gi|551676385|ref|XP_005840946.1|5.677e-7557.01hypothetical protein GUITHDRAFT_100216 [Guillardia... [more]
gi|553192018|ref|XP_005855498.1|4.729e-7458.67peptide methionine sulfoxide reductase [Nannochlor... [more]
gi|298708882|emb|CBJ30839.1|2.273e-7061.45methionine sulfoxide reductase [Ectocarpus silicul... [more]
gi|551553186|ref|XP_005763917.1|3.290e-6952.66putative peptide methione-S-sulfoxide reductase [E... [more]
gi|676379919|ref|XP_009033238.1|4.929e-6854.09hypothetical protein AURANDRAFT_20277 [Aureococcus... [more]
gi|551542701|ref|XP_005759537.1|8.168e-6859.76methionine sulfoxide reductase, partial [Emiliania... [more]
gi|302772769|ref|XP_002969802.1|3.154e-6661.45hypothetical protein SELMODRAFT_227932 [Selaginell... [more]
gi|302806812|ref|XP_002985137.1|4.180e-6661.45hypothetical protein SELMODRAFT_121679 [Selaginell... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8100rna8100Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications