rna8095, rna8095 (mRNA) Nannochloropsis gaditana

Overview
Namerna8095
Unique Namerna8095
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length261
Alignment locationKK037247.1:549063..550438 +

Link to JBrowse

Properties
Property NameValue
Productdna rna helicase
Orig transcript idgnl|cribi|Naga_100126g9.3022.mrna
Orig protein idgnl|cribi|Naga_100126g9.3022
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:549063..550438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100126g9gene7839Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8095rna8095-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22596.1cds8073Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8095 ID=rna8095|Name=rna8095|organism=Nannochloropsis gaditana|type=mRNA|length=261bp
ATGAGGCATTTATTATCGACATACGAAATACAGCAAACGAGACTCTTCGA
TAAACAGATAACAGTATTGAAAATGGAATTAAATGCTTACTTTGGCTGGA
AACCAAAGCGAGGGTGCAAAGTCAAATATGTTCGGAACAACAAGCTGCTG
TGTACAACCAGGTGTCCCTCTGCATGTGAGCGTTTTAGCCCAACAAACAA
ACACTTTAATGTAATTTGCGCCTTCAAAGCTACGCATCAGCACTATCAAA
TCCGCTCTTGA
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protein sequence of rna8095

>rna8095-protein ID=rna8095-protein|Name=rna8095|organism=Nannochloropsis gaditana|type=polypeptide|length=305bp
MATPRQLGFSTPQRAATSDADVSHDKKTDVAFVLRTEAPAAGTADRSVSP
TPDALLPPMTSMPSRISTALLSTPVKLPHTQSCGTGEEGGGFSTPDAPTA
GVRHSTGSSLLLHHHRRRNLTPQDGTDHDDSLESHAQHQTEGHDPDFDCP
ICMSPLALRSVYKTRCSHHFHKSCLVESRAAHNIGCPYCRGHITPGLTPF
DACAGRVGNDRDQIVNRARAARQAVLARIQQRQGERRGRGGVSDRRWTLS
VLREGDGSDVGALGGLNEAFERVAAISGEREPRRVVMAGSTEDLGHRIDH
DDDLP
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mRNA from alignment at KK037247.1:549063..550438+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8095 ID=rna8095|Name=rna8095|organism=Nannochloropsis gaditana|type=mRNA|length=1376bp|location=Sequence derived from alignment at KK037247.1:549063..550438+ (Nannochloropsis gaditana)
TCATTACAAGACGTTTTCAATACGCAACATAGACCAGAGTCTTATATTTT
TTCCTTACAACCGTTATATCCGTACGTGTTCGTGCTGCTAGGCCCCCTCG
CCAGATTTTTTGGGGCGACAAGCGGGCATTTgacgccttcgtcttcctaG
TGCATCAACTTCCCCTAAGGGCCACACTTCAAAATCTTGCTGAGGCTATT
CCGAGCATCGCATTTCGCACACGCAGGCGTCGAACGCATGGCTACACCGA
GGCAACTAGGATTTTCCACACCACAAAGAGCAGCAACGTCAGACGCGGAT
GTCTCCCATGATAAAAAAACTGATGTCGCGTTCGTGCTGCGAACTGAAGC
CCCAGCAGCAGGAACGGCAGATAGATCTGTCTCCCCTACGCCCGACGCCC
TACTTCCTCCCATGACTTCTATGCCTTCACGTATCAGCACTGCCCTTTTA
AGCACCCCTGTGAAATTACCGCACACCCAGAGTTGCGGcaccggggagga
aggaggtgggttCAGCACCCCCGACGCTCCTACAGCGGGCGTACGTCACA
GTaccggctcctccctcctcctgcaccacCACCGGCGTCGCAACCTCACC
CCACAGGACGGCACTGATCACGACGATAGCCTAGAGAGCCATGCTCAGCA
CCAAACAGAAGGGCATGATCCCGATTTCGACTGTCCCATCTGCATGTCCC
CTTTGGCCCTGCGCTCCGTGTACAAGACGCGCTGCTCCCACCACTTCCAC
AAATCCTGCCTGGTCGAAAGTCGGGCCGCGCACAACATTGGATGTCCTTA
TTGTCGGGGACACATCACGCCTGGGTTGACCCCTTTTGACGCCTGCGCGG
GCCGCGTGGGCAATGACAGGGACCAGATTGTCAATCGGGCCAGGGCAGCG
CGACAGGCAGTACTGGCGCGGATTCAGCAACGCCAAGGCGaaaggcgggg
caggggaggagtgagTGATAGGCGATGGACCTTGTCAGtgctgagagagg
gagacgggtcGGACGTGGGGGCCCTTGGAGGCTTGAACGAGGCGTTTGAG
CGGGTGGCGGCTATttcgggggagagggaaccACGCCGCGTTGTCATGGC
CGGCTCGACGGAGGATCTGGGCCACCGCATCGATCACGATGATGATTTGC
CATGATGGATGACGGGTCACAAGAAGATGAGGGACGGAAACGTTCAAAAA
GGAAACAAAAGGAAGCGCGACGAAGGCCAAAGAAAGACATGCGTTTGCGG
TGCGACACCGTCACAAGAAAGGAATGCCTCAGTTAAGGCTGCCCCATCAA
AAAGCTTATATGATTGTTTTTCTCTGCATTTACCTTTTCAGTCGTCTCTG
AATTTCAAAAAATATGGTCGACATCC
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Coding sequence (CDS) from alignment at KK037247.1:549063..550438+

>rna8095 ID=rna8095|Name=rna8095|organism=Nannochloropsis gaditana|type=CDS|length=918bp|location=Sequence derived from alignment at KK037247.1:549063..550438+ (Nannochloropsis gaditana)
ATGGCTACACCGAGGCAACTAGGATTTTCCACACCACAAAGAGCAGCAAC
GTCAGACGCGGATGTCTCCCATGATAAAAAAACTGATGTCGCGTTCGTGC
TGCGAACTGAAGCCCCAGCAGCAGGAACGGCAGATAGATCTGTCTCCCCT
ACGCCCGACGCCCTACTTCCTCCCATGACTTCTATGCCTTCACGTATCAG
CACTGCCCTTTTAAGCACCCCTGTGAAATTACCGCACACCCAGAGTTGCG
GcaccggggaggaaggaggtgggttCAGCACCCCCGACGCTCCTACAGCG
GGCGTACGTCACAGTaccggctcctccctcctcctgcaccacCACCGGCG
TCGCAACCTCACCCCACAGGACGGCACTGATCACGACGATAGCCTAGAGA
GCCATGCTCAGCACCAAACAGAAGGGCATGATCCCGATTTCGACTGTCCC
ATCTGCATGTCCCCTTTGGCCCTGCGCTCCGTGTACAAGACGCGCTGCTC
CCACCACTTCCACAAATCCTGCCTGGTCGAAAGTCGGGCCGCGCACAACA
TTGGATGTCCTTATTGTCGGGGACACATCACGCCTGGGTTGACCCCTTTT
GACGCCTGCGCGGGCCGCGTGGGCAATGACAGGGACCAGATTGTCAATCG
GGCCAGGGCAGCGCGACAGGCAGTACTGGCGCGGATTCAGCAACGCCAAG
GCGaaaggcggggcaggggaggagtgagTGATAGGCGATGGACCTTGTCA
GtgctgagagagggagacgggtcGGACGTGGGGGCCCTTGGAGGCTTGAA
CGAGGCGTTTGAGCGGGTGGCGGCTATttcgggggagagggaaccACGCC
GCGTTGTCATGGCCGGCTCGACGGAGGATCTGGGCCACCGCATCGATCAC
GATGATGATTTGCCATGA
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Synonyms
Publications