EWM22596.1, cds8073 (CDS) Nannochloropsis gaditana

Overview
NameEWM22596.1
Unique Namecds8073
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:549300..550217 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22596.1
Productdna rna helicase
Orig transcript idgnl|cribi|Naga_100126g9.3022.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:549300..550217 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
[Close]
BLAST of EWM22596.1 vs. NCBI_GenBank
Match: gi|585103159|gb|EWM22596.1| (dna rna helicase [Nannochloropsis gaditana])

HSP 1 Score: 618.616 bits (1594), Expect = 0.000e+0
Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 0 
Query:    1 MATPRQLGFSTPQRAATSDADVSHDKKTDVAFVLRTEAPAAGTADRSVSPTPDALLPPMTSMPSRISTALLSTPVKLPHTQSCGTGEEGGGFSTPDAPTAGVRHSTGSSLLLHHHRRRNLTPQDGTDHDDSLESHAQHQTEGHDPDFDCPICMSPLALRSVYKTRCSHHFHKSCLVESRAAHNIGCPYCRGHITPGLTPFDACAGRVGNDRDQIVNRARAARQAVLARIQQRQGERRGRGGVSDRRWTLSVLREGDGSDVGALGGLNEAFERVAAISGEREPRRVVMAGSTEDLGHRIDHDDDLP 305
            MATPRQLGFSTPQRAATSDADVSHDKKTDVAFVLRTEAPAAGTADRSVSPTPDALLPPMTSMPSRISTALLSTPVKLPHTQSCGTGEEGGGFSTPDAPTAGVRHSTGSSLLLHHHRRRNLTPQDGTDHDDSLESHAQHQTEGHDPDFDCPICMSPLALRSVYKTRCSHHFHKSCLVESRAAHNIGCPYCRGHITPGLTPFDACAGRVGNDRDQIVNRARAARQAVLARIQQRQGERRGRGGVSDRRWTLSVLREGDGSDVGALGGLNEAFERVAAISGEREPRRVVMAGSTEDLGHRIDHDDDLP
Sbjct:    1 MATPRQLGFSTPQRAATSDADVSHDKKTDVAFVLRTEAPAAGTADRSVSPTPDALLPPMTSMPSRISTALLSTPVKLPHTQSCGTGEEGGGFSTPDAPTAGVRHSTGSSLLLHHHRRRNLTPQDGTDHDDSLESHAQHQTEGHDPDFDCPICMSPLALRSVYKTRCSHHFHKSCLVESRAAHNIGCPYCRGHITPGLTPFDACAGRVGNDRDQIVNRARAARQAVLARIQQRQGERRGRGGVSDRRWTLSVLREGDGSDVGALGGLNEAFERVAAISGEREPRRVVMAGSTEDLGHRIDHDDDLP 305
[Close]
BLAST of EWM22596.1 vs. NCBI_GenBank
Match: gi|299471507|emb|CBN79993.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.8626 bits (172), Expect = 9.328e-11
Identity = 42/99 (42.42%), Postives = 54/99 (54.55%), Query Frame = 0 
Query:  149 CPICMSPL-----ALRSVYKTR-CSHHFHKSCLVESRAAHNIGCPYCRGHITPGLTPFDACAGRVG--------NDRDQIVNRARAARQAVLARIQQRQ 233
            C IC+SPL     A + VY  R C H FH++CLVE+R A N GCPYCRG +  GLTP    A R          + R+ I N A  AR A+   ++ R+
Sbjct:  105 CAICLSPLKKPSGAKKEVYTVRLCQHMFHRACLVENRRAGNTGCPYCRGDLERGLTPEATAAEREAKVLAAQQQDQREAIRNAAGRARMALARSLRLRE 203
The following BLAST results are available for this feature:
BLAST of EWM22596.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103159|gb|EWM22596.1|0.000e+0100.00dna rna helicase [Nannochloropsis gaditana][more]
gi|299471507|emb|CBN79993.1|9.328e-1142.42conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8095rna8095Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications