rna8093, rna8093 (mRNA) Nannochloropsis gaditana

Overview
Namerna8093
Unique Namerna8093
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1446
Alignment locationKK037247.1:545754..546672 -

Link to JBrowse

Properties
Property NameValue
Productmyb-like dna-binding shaqkyf class family protein
Orig transcript idgnl|cribi|Naga_100126g11.3029.mrna
Orig protein idgnl|cribi|Naga_100126g11.3029
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:545754..546672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100126g11gene7837Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8093rna8093-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22603.1cds8071Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8093 ID=rna8093|Name=rna8093|organism=Nannochloropsis gaditana|type=mRNA|length=1446bp
GGAGGATAAGGAGACAAAGCCAAGAGATTGAATTGAATTACTTCTACCAA
GACGTCTTCACCCGCGGCGACAGGATGAAATGAAAAGAAAAACAAAGCAG
TGCTAGTAATAAGAAGAAAACATGCAGGACTTGCTTCAGAATGAAGCACA
TACTTTTGAACGTCCGAGTGGGCATAGTTTTCAGAATACCCCGGCAGCAG
TCAAATGCAACATCAGCAACACAGAGAGCGCCAGGCCCTGCGACCATGCC
CATATTGGACGACGAAGGGGTTAATACGACGGACATGAGTTGAAATTAGA
TTTCCTTTCAAACCTCGACAGGTGATAATCACAATAGAGACCAAAGCACC
CATCAGTTTACATCCATGTCCATGGGTACCTGCTACACCCGCTGTAGCAT
TATACTGCTTTGTATCTCGAGTCTTCTACAGATTGGTCTAGTCCACTCGC
GTCTTGGATATGCAAGCGAACAGTTGACTAAAAAAACACCTCCAGTCTGG
CCACCGCAGCTCACAGCACTTTTGCTGCAAAATCGCGGCGGCAACCTAAG
CGACACCACCCTCGCCTACGATCTGCCCAATGGTAGGAATCTGAACATCA
TCAAAGACAGACAGACCGGCTTGACCCTCTGGGACAACGAGCGGGCGAAT
GGCTCCACCTACTACTACCACAAGGCCCCGGAGGCAGAAAGTTGCCAAGC
GCTGAACATGCACGTCGGCATCCTGAAACCGGACTGGCTGGCGGGGGCGC
GCTATAAGGGCATGGAGGATGTGAAAGGGCACCTGTGCGATGTGTGGGCG
CAGTCGAGTTCTCTTCACCACCCCTTCGTCACCTACTTTGCCGACGCGCA
GACGGAAAGGCCCTGGCGCTGGATTTTCTTCGATGGAGCGATATTCGACG
TACTTGAATGGACTCCAGGGGGCACTTTGGAGGACGAGGCGTGGCAACTT
CCGGCCTACTGCTTCGAGAAGGATAGAAAAGACTTCTTGTCGGATGGGCA
GGTGCAACAATCGGAGGGTGTGGCACAGATGTGAGAGGGTAGAGAACCTT
CCATGGTATCGAGTTGTGAGCGGCGAGAGATCAGTAATGCGAGGACGGGC
CTCGACTGTGATGGCACACAGTCTGTCATGCGTATCAAAATGAAAGCACC
TGATGTGTACATTCTCGATTGCTCTTCCTTTCTTTCGCCCTCTGTGGGTC
TTTTCCAGACACAGATGGATCGACACTGCATATATGGTACATACGGCTAC
ATGATCACTTGGTATGCATGCCTCGTTCATTCTGTATGGCTCAGCTTCTG
AGCAGTACACGCTTATAACTCGAGTCTGATAGACGGACTTATTTGATCTT
ATGAATATATATGACAATTTTTTACATTTTTTTCCCATTGTTATGTTGTT
CGGGTTAGGGTGATGATCGATTCCTTTTAATTGTCAATAATTTGTG
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protein sequence of rna8093

>rna8093-protein ID=rna8093-protein|Name=rna8093|organism=Nannochloropsis gaditana|type=polypeptide|length=71bp
MTCRCQGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKY
FQRIAQAKESRRIGETPTTAR
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mRNA from alignment at KK037247.1:545754..546672-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8093 ID=rna8093|Name=rna8093|organism=Nannochloropsis gaditana|type=mRNA|length=919bp|location=Sequence derived from alignment at KK037247.1:545754..546672- (Nannochloropsis gaditana)
ATGACCTGTCGGTGTCAGGGTGGGGCCCATTCCACGAGCGATTGCGTTGC
ATGCTCGGTCGATAGTACGCATCGTGACGAGACTCGCGAAGCCGGACAAG
AACCACCAGAAAAACCTCGTATTTACGACGCCCATTTCGTGCCTTGTACA
CTCGACCTCACACCGTCTTGGGCGCCCGCGCCAAACAAGGAGGGAGGGCC
CTCTCCCCTGGTAAGGAGGGAATCTGTGAGGCAGCTAGGAATCAAGGCAT
GTATAGTGCATGTTGACAGAGGATGTGTCTTTTAAGCAGACGTGTTTATG
CCTTCCTCCATGAAGCTGTCTGGGCTGGCTTGTCGCGTGGCCACCACAAG
GTGGGGCCTGTGTTGCCGTCGTTTCATCAGGCAGTCTGTACGTGTAAAAC
GAGTGATGTGATCCATCTACACGCCTTTCATCGCTTTGTTTGTCTTCCAA
ATCTGGACGTCGTCTCTAAAACAATCTCAAAAGCGTGCCTTTTCGAAGCA
TAATCCATCCGTTATGATTTATCCGCTTTTCCTTCCTTCTCATAATCTCT
GATCGCATCCCTCCTTTACATCAAAGCCAGGGCGGTGGACGAAGCAAGAG
CACCTCGCCTTTTTGCGAGGGCTTCGAGTATACGGAAGAGACTGGAATAA
GATCCAAAGATTAGTTGGCACCCGCAGCCAACCTCAAGTGCGGAGTCACG
CGCAAAAATACTTTCAGAGGATCGCGCAGGCGAAAGAGAGCAGGCGGATC
GGTGAAAGTGATTTCCAGTTTATGATGGACGGAAAGCGTATGTTCAAGAG
TGCCCAAAAAAGGGGGTCTGGGGGACGAAAGGAGAACAAGACAGGCGCCC
AGGGCACAAATCAGAGACGAGACGCGCGCCCCTTTGGTTGGTACAGCAGC
CCCTACTACAGCGAGATAA
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Coding sequence (CDS) from alignment at KK037247.1:545754..546672-

>rna8093 ID=rna8093|Name=rna8093|organism=Nannochloropsis gaditana|type=CDS|length=648bp|location=Sequence derived from alignment at KK037247.1:545754..546672- (Nannochloropsis gaditana)
CCCCTACTACAGCGAGATAAGGCGGTGGACGAAGCAAGAGCACCTCGCCT
TTTTGCGAGGGCTTCGAGTATACGGAAGAGACTGGAATAAGATCCAAAGA
TTAGTTGGCACCCGCAGCCAACCTCAAGTGCGGAGTCACGCGCAAAAATA
CTTTCAGAGGATCGCGCAGGCGAAAGAGAGCAGGCGGATCGGTGAAAATG
ACCTGTCGGTGTCAGGCCCCTACTACAGCGAGATAAGGCGGTGGACGAAG
CAAGAGCACCTCGCCTTTTTGCGAGGGCTTCGAGTATACGGAAGAGACTG
GAATAAGATCCAAAGATTAGTTGGCACCCGCAGCCAACCTCAAGTGCGGA
GTCACGCGCAAAAATACTTTCAGAGGATCGCGCAGGCGAAAGAGAGCAGG
CGGATCGGTGAAAATGACCTGTCGGTGTCAGGCCCCTACTACAGCGAGAT
AAGGCGGTGGACGAAGCAAGAGCACCTCGCCTTTTTGCGAGGGCTTCGAG
TATACGGAAGAGACTGGAATAAGATCCAAAGATTAGTTGGCACCCGCAGC
CAACCTCAAGTGCGGAGTCACGCGCAAAAATACTTTCAGAGGATCGCGCA
GGCGAAAGAGAGCAGGCGGATCGGTGAAAATGACCTGTCGGTGTCAGG
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Synonyms
Publications