EWM22603.1, cds8071 (CDS) Nannochloropsis gaditana

Overview
NameEWM22603.1
Unique Namecds8071
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:546654..546672 -
Alignment locationKK037247.1:545916..546092 -
Alignment locationKK037247.1:545754..545773 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22603.1
Productmyb-like dna-binding shaqkyf class family protein
Orig transcript idgnl|cribi|Naga_100126g11.3029.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:546654..546672 -
KK037247.1supercontigKK037247.1:545916..546092 -
KK037247.1supercontigKK037247.1:545754..545773 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR006447Myb_dom_plants
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|585103166|gb|EWM22603.1| (myb-like dna-binding shaqkyf class family protein [Nannochloropsis gaditana])

HSP 1 Score: 147.902 bits (372), Expect = 3.416e-45
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0
Query:    1 MTCRCQGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGETPTTAR 71
            MTCRCQGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGETPTTAR
Sbjct:    1 MTCRCQGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGETPTTAR 71          
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|432998484|gb|AGB13670.1| (MYB360 [Nannochloropsis sp. YJH-2012])

HSP 1 Score: 120.939 bits (302), Expect = 1.878e-31
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0
Query:    7 GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGET 66
            GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRI QAKES RIGE+
Sbjct:   72 GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRITQAKESGRIGES 131          
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|585107504|gb|EWM25668.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 77.7962 bits (190), Expect = 3.371e-15
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 0
Query:    7 GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGE 65
            GRWT +EH+ FL+GL  +G+DW +I + + TRS  Q+RSHAQKYFQ++ QAK S R+G+
Sbjct:   87 GRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGD 145          
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|298714408|emb|CBJ27465.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.7962 bits (190), Expect = 3.463e-15
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 0
Query:    1 MTCRCQGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGETPTTAR 71
            MT +  GRWT  EH  FLRGL ++G+ W KI  L+ TR+  Q+R+HAQKYFQ+IA+AK++   G+    ++
Sbjct:    1 MTPKNTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNGEHGDVAMDSK 71          
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|585113115|gb|EWM30452.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 76.2554 bits (186), Expect = 1.243e-14
Identity = 30/59 (50.85%), Postives = 47/59 (79.66%), Query Frame = 0
Query:    7 GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGE 65
            GRWT +EH+ FL+GL ++G+ W KI +L+ TR+  Q+R+HAQKYFQ++A+AK++   G+
Sbjct:  101 GRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGD 159          
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|585100896|gb|EWM20940.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 76.2554 bits (186), Expect = 1.385e-14
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 0
Query:    7 GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAK 58
            GRWT +EH AFLRGLRVYGR+W ++   + TRS  Q+RSHAQKYF ++A+A+
Sbjct:  219 GRWTAEEHEAFLRGLRVYGREWKRVAADIKTRSSAQIRSHAQKYFAKLAKAR 270          
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|695416917|ref|XP_009526968.1| (hypothetical protein PHYSODRAFT_373030, partial [Phytophthora sojae] >gi|348678093|gb|EGZ17910.1| hypothetical protein PHYSODRAFT_373030, partial [Phytophthora sojae])

HSP 1 Score: 69.707 bits (169), Expect = 1.736e-14
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 0
Query:    7 GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIA 55
            GRWT+QEH +FL GLR+YGR+W K+   + TR+  Q+RSHAQKYF ++A
Sbjct:    4 GRWTEQEHQSFLAGLRLYGREWKKVAAKIKTRTSAQIRSHAQKYFAKLA 52          
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|970638623|gb|KUF82046.1| (LHY protein [Phytophthora nicotianae] >gi|970639070|gb|KUF82319.1| LHY protein [Phytophthora nicotianae] >gi|970652386|gb|KUF91058.1| Myosin protein [Phytophthora nicotianae])

HSP 1 Score: 75.0998 bits (183), Expect = 2.530e-14
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 0
Query:    7 GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRR 62
            GRWT+QEH +FL GLR+YGR+W K+   + TR+  Q+RSHAQKYF ++A+  E R+
Sbjct:   99 GRWTEQEHQSFLAGLRLYGREWKKVAAKIKTRTSAQIRSHAQKYFAKLARDDEMRK 154          
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|1072233775|gb|OEU18505.1| (hypothetical protein FRACYDRAFT_155665, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 69.3218 bits (168), Expect = 2.904e-14
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 0
Query:    8 RWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKE 59
            RWTK+EH AFL GL++YG++W K+   V TR+  Q R+HAQKYFQ++++A E
Sbjct:    1 RWTKEEHDAFLSGLKMYGKEWKKVAAKVKTRTVVQTRTHAQKYFQKLSKATE 52          
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|953491162|emb|CEG46021.1| (myb-like dna-binding shaqkyf class family protein [Plasmopara halstedii])

HSP 1 Score: 74.7146 bits (182), Expect = 3.131e-14
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 0
Query:    7 GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGETPT 68
            GRWT QEH +FL GLR+YGR+W K+   + TR+  Q+RSHAQKYF ++ +  E R+    PT
Sbjct:   93 GRWTDQEHQSFLAGLRLYGREWKKVAAKIKTRTSAQIRSHAQKYFAKLTRDDELRKPSALPT 154          
The following BLAST results are available for this feature:
BLAST of EWM22603.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103166|gb|EWM22603.1|3.416e-45100.00myb-like dna-binding shaqkyf class family protein ... [more]
gi|432998484|gb|AGB13670.1|1.878e-3195.00MYB360 [Nannochloropsis sp. YJH-2012][more]
gi|585107504|gb|EWM25668.1|3.371e-1555.93SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|298714408|emb|CBJ27465.1|3.463e-1547.89conserved unknown protein [Ectocarpus siliculosus][more]
gi|585113115|gb|EWM30452.1|1.243e-1450.85SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|585100896|gb|EWM20940.1|1.385e-1461.54SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|695416917|ref|XP_009526968.1|1.736e-1459.18hypothetical protein PHYSODRAFT_373030, partial [P... [more]
gi|970638623|gb|KUF82046.1|2.530e-1455.36LHY protein [Phytophthora nicotianae] >gi|97063907... [more]
gi|1072233775|gb|OEU18505.1|2.904e-1455.77hypothetical protein FRACYDRAFT_155665, partial [F... [more]
gi|953491162|emb|CEG46021.1|3.131e-1451.61myb-like dna-binding shaqkyf class family protein ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8093rna8093Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications