EWM22603.1, cds8071 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|585103166|gb|EWM22603.1| (myb-like dna-binding shaqkyf class family protein [Nannochloropsis gaditana]) HSP 1 Score: 147.902 bits (372), Expect = 3.416e-45 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0
Query: 1 MTCRCQGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGETPTTAR 71
MTCRCQGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGETPTTAR
Sbjct: 1 MTCRCQGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGETPTTAR 71
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|432998484|gb|AGB13670.1| (MYB360 [Nannochloropsis sp. YJH-2012]) HSP 1 Score: 120.939 bits (302), Expect = 1.878e-31 Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0
Query: 7 GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGET 66
GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRI QAKES RIGE+
Sbjct: 72 GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRITQAKESGRIGES 131
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|585107504|gb|EWM25668.1| (SANT/Myb domain protein [Nannochloropsis gaditana]) HSP 1 Score: 77.7962 bits (190), Expect = 3.371e-15 Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 0
Query: 7 GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGE 65
GRWT +EH+ FL+GL +G+DW +I + + TRS Q+RSHAQKYFQ++ QAK S R+G+
Sbjct: 87 GRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGD 145
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|298714408|emb|CBJ27465.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 77.7962 bits (190), Expect = 3.463e-15 Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 0
Query: 1 MTCRCQGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGETPTTAR 71
MT + GRWT EH FLRGL ++G+ W KI L+ TR+ Q+R+HAQKYFQ+IA+AK++ G+ ++
Sbjct: 1 MTPKNTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNGEHGDVAMDSK 71
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|585113115|gb|EWM30452.1| (SANT/Myb domain protein [Nannochloropsis gaditana]) HSP 1 Score: 76.2554 bits (186), Expect = 1.243e-14 Identity = 30/59 (50.85%), Postives = 47/59 (79.66%), Query Frame = 0
Query: 7 GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGE 65
GRWT +EH+ FL+GL ++G+ W KI +L+ TR+ Q+R+HAQKYFQ++A+AK++ G+
Sbjct: 101 GRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGD 159
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|585100896|gb|EWM20940.1| (SANT/Myb domain protein [Nannochloropsis gaditana]) HSP 1 Score: 76.2554 bits (186), Expect = 1.385e-14 Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 0
Query: 7 GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAK 58
GRWT +EH AFLRGLRVYGR+W ++ + TRS Q+RSHAQKYF ++A+A+
Sbjct: 219 GRWTAEEHEAFLRGLRVYGREWKRVAADIKTRSSAQIRSHAQKYFAKLAKAR 270
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|695416917|ref|XP_009526968.1| (hypothetical protein PHYSODRAFT_373030, partial [Phytophthora sojae] >gi|348678093|gb|EGZ17910.1| hypothetical protein PHYSODRAFT_373030, partial [Phytophthora sojae]) HSP 1 Score: 69.707 bits (169), Expect = 1.736e-14 Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 0
Query: 7 GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIA 55
GRWT+QEH +FL GLR+YGR+W K+ + TR+ Q+RSHAQKYF ++A
Sbjct: 4 GRWTEQEHQSFLAGLRLYGREWKKVAAKIKTRTSAQIRSHAQKYFAKLA 52
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|970638623|gb|KUF82046.1| (LHY protein [Phytophthora nicotianae] >gi|970639070|gb|KUF82319.1| LHY protein [Phytophthora nicotianae] >gi|970652386|gb|KUF91058.1| Myosin protein [Phytophthora nicotianae]) HSP 1 Score: 75.0998 bits (183), Expect = 2.530e-14 Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 0
Query: 7 GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRR 62
GRWT+QEH +FL GLR+YGR+W K+ + TR+ Q+RSHAQKYF ++A+ E R+
Sbjct: 99 GRWTEQEHQSFLAGLRLYGREWKKVAAKIKTRTSAQIRSHAQKYFAKLARDDEMRK 154
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|1072233775|gb|OEU18505.1| (hypothetical protein FRACYDRAFT_155665, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 69.3218 bits (168), Expect = 2.904e-14 Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 0
Query: 8 RWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKE 59
RWTK+EH AFL GL++YG++W K+ V TR+ Q R+HAQKYFQ++++A E
Sbjct: 1 RWTKEEHDAFLSGLKMYGKEWKKVAAKVKTRTVVQTRTHAQKYFQKLSKATE 52
BLAST of EWM22603.1 vs. NCBI_GenBank
Match: gi|953491162|emb|CEG46021.1| (myb-like dna-binding shaqkyf class family protein [Plasmopara halstedii]) HSP 1 Score: 74.7146 bits (182), Expect = 3.131e-14 Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 0
Query: 7 GRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGETPT 68
GRWT QEH +FL GLR+YGR+W K+ + TR+ Q+RSHAQKYF ++ + E R+ PT
Sbjct: 93 GRWTDQEHQSFLAGLRLYGREWKKVAAKIKTRTSAQIRSHAQKYFAKLTRDDELRKPSALPT 154 The following BLAST results are available for this feature:
BLAST of EWM22603.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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