rna8092, rna8092 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8092
Unique Name	rna8092
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1791
Alignment location	KK037247.1:542785..544853 +

Link to JBrowse

Properties


Property Name	Value
Product	transferase-like protein
Orig transcript id	gnl\|cribi\|Naga_100126g12.3026.mrna
Orig protein id	gnl\|cribi\|Naga_100126g12.3026
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:542785..544853 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100126g12	gene7836	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8092	rna8092-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22600.1	cds8070	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:542785..544853+
coding sequence from alignment at KK037247.1:542785..544853+

mRNA sequence

>rna8092 ID=rna8092|Name=rna8092|organism=Nannochloropsis gaditana|type=mRNA|length=1791bp
ATGAGAAGCCGCATGCTCGCCCTCGGCCCTCCCCTCTTATGCCTTCCACT
CCTTCTCCAGCCCCTCTTTGCCTTTTTCCATGTGGCGCCGTCCTATCCTC
TGCAGCGCACGAAAAAAATAAACTGTTGTCAGTCGGCGTTTATTTCTCTG
TCAGGCATGTCAGCATACCCAAAATATCGGTCTCTCGGAAGACCTCGAGG
TCGGCACGTCTTGCGCATGGAGGCGGACGGGGGCTGGCCGACGGCCCATG
GCGACGGGGACGATAGTGGATACCACAATGGGATCCCCAGCGACCTGAGC
AGCAATGGCAATAGCGAAGTGAGCGAGGATGGCACTGGCTCATTGTCGTC
GCCTCCCTTTGTACCTTTTCCGCTATTTCCTTTCTCTGATTGTGGCGAGG
CTGCAATGGCGCAATTTCCAGATATGACCGACGAAGGCCTTCACAGCGAT
GTTGAAGGTAGCACTCATGAGTGCGGAGATGGCGAAAAGAGAACGCGTGG
CACCGATATCACGGGAAGAGGTGGTCGTGCCCTGGGAGGCCGAGTCCCCT
GGATCGAGGGCCGGCTCGACCGGGTAGCATCGTTTCTCTTCTCTTCGCAT
CGACGAGCGCGGCAGCTGCGGCGTCGAACCGAGGGGGCGGGCGACGGGCG
GGGCGCTGAGGGCCGCAGGGAAGGCGGTGGTCATGCAGCTGGGCAGGCGA
ACAAGGGAAGGGATATGTCGGGAAAACGCGGAGGGCCGACCGCATTCCGA
GGTATTCGCACAAGTCTGAGCGAGACGGACGAGCAAGGCCGCTTTGTCCG
AAGTCCCAGCGTGCACCGAAACTGGGTGGGGCCCCAGGCAAAGTACCGTC
CACAGCCCAATCGCTACCACCTTTACGTCTCCCTCGCCTGCCCTTGGTCT
TGCCGGTGCTTGATGGTGCTGTACCTGAAAGGCCTCGATAACGTCATTTC
CATCAGCGTCACGCATCCTACGTGGGCCCGCACCCGCCTTAACGACGAGC
TTGACCACCACACGGGCTGGGTTTTCCGCGCGCAGAGCGATCCCCCGGTC
TCGAGTCCCGCAGGCTGGGGCCGCTTCCCTTGCCACGGGTGCATCCCCGA
CTACGTCAACGGCGCCCGAACCGTCCGGGAGCTCTACGAGGAATCCCGGG
ACACCGAGGGCAAGTTCACCGTTCCGATCCTTTGGGACAAACGGACGGGG
ACGATTGTGAACAATGAGAGCGGAGATATCATTCGCATGCTGAACGATCA
GTTCAACGAGTGGGCGATGAACCCGAACCTGAACCTCTTTCCCTACGAGC
TGGGAAAGGCCCTGGACCAGTACGGAGACTGGCTTCACGAGACCTTGAAC
GACGGCGTGTACAAATGCGGCTTTGCCACGAGCCAGCCTGCGTACGAAGA
AGCGGTGGAAGGGGTGGTGGGGGCGATGGACCACTTGGAGGCTCTGCTGG
GGCGGCAGAGGTACCTGCTGGGAGACCGACTGACAGAGGCGGACGTGAGG
CTTTTCCAGACCTTGGTACGCTTTGACGAGGTGTATTTGCCTCATTTCAA
GTGCAGCCGTAAGTCCATCTTAGGGGACTATCCGAACCTGCTCAATTACG
CGCGAGAGCTCTTCCAATTGCCCGGCGTCGCCCTCAGTGTCAATATGCAA
CACATTAAGACCCACTATTACACCTCCCATCCAACTCTCAACCATTTTGC
TCTGATTCCTGCGGGTCCAAGGTTCCTCCATGAGCTGTACAAATCTCATG
ACAGAGAAAAGTTTCCGAGAAAGCGGGTGGGCTTGTGGTAA

protein sequence of rna8092

>rna8092-protein ID=rna8092-protein|Name=rna8092|organism=Nannochloropsis gaditana|type=polypeptide|length=222bp
MSMGTCYTRCSIILLCISSLLQIGLVHSRLGYASEQLTKKTPPVWPPQLT
ALLLQNRGGNLSDTTLAYDLPNGRNLNIIKDRQTGLTLWDNERANGSTYY
YHKAPEAESCQALNMHVGILKPDWLAGARYKGMEDVKGHLCDVWAQSSSL
HHPFVTYFADAQTERPWRWIFFDGAIFDVLEWTPGGTLEDEAWQLPAYCF
EKDRKDFLSDGQVQQSEGVAQM

mRNA from alignment at KK037247.1:542785..544853+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8092 ID=rna8092|Name=rna8092|organism=Nannochloropsis gaditana|type=mRNA|length=2069bp|location=Sequence derived from alignment at KK037247.1:542785..544853+ (Nannochloropsis gaditana)
GGAGGATAAGGAGACAAAGCCAAGAGATTGAATTGAATTACTTCTACCAA
GACGTCTTCACCCGCGGCGACAGGATGaaatgaaaagaaaaacaaaGCAG
TGCTAGTAATAAGAAGAAAACATGCAGGACTTGCTTCAGAATGAAGCACA
TACTTTTGAACGTCCGAGTGGGCATAGTTTTCAGAATACCCCGGCAGCAG
TCAAATGCAACATCAGCAACACAGAGAGCGCCAGGCCCTGCGACCATGCC
CATATTGGACGACGAAGGGGTTAATACGACGGACATGAGTTGAAATTAGA
TTTCCTTTCAAACCTCGACAGGTGATAATCACAATAGAGACCAAAGCACC
CATCAGTTTACATCCATGTCCATGGGTACCTGCTACACCCGCTGTAGCAT
TATACTGCTTTGTATCTCGAGTCTTCTACAGATTGGTCTAGTCCACTCGC
GTCTTGGATATGCAAGCGAACAGTTGACTAAAAAAACACCTCCAGTCTGG
CCACCGCAGCTCACAGCACGTAAGATAGTCGGGATGACTAGGGTAGATCA
TTTGACTTTTTTCTTTGACGACCTACAAACATTTCACGTCGGGCCTTTTG
TACTACATGTAGCCTTATGTGATACAAGTACCATCTCTCACTTCGACCAC
TTGTATTTTATAAGCAAGTGTGGTCTGTTGGCGCCTGACGTGAACATAGT
TGTGTAGTTTCATGTCTATTGCCTGTAATAACCTTGCTTGCACTCCGCGT
GAtggtctcctccgccccttcaaAACACCTCTCTTTATAGTTTTGCTGCA
AAATCGCGGCGGCAACCTAAGCGACACCACCCTCGCCTACGATCTGCCCA
ATGGTAGGAATCTGAACATCATCAAAGACAGACAGACCGGCTTGACCCTC
TGGGACAACGAGCGGGCGAATGGCTCCACCTACTACTACCACAAGGCCCC
GGAGGCAGAAAGTTGCCAAGCGCTGGTAAATATGAGAGCAGGACAGGATG
GCACGAAATTAACGGAGTGTGAGGTTTGTTGATGATCAAGTACtgaagga
agggcaagagcaCGCTGTCGGTGAAGCAGTCTACTCAGACCTGTACccct
gctgcctccctcctccactccccacACAACCCCTTAGAACATGCACGTCG
GCATCCTGAAACCGGACTGGCTGGCGGGGGCGCGCTATAAGGGCATGGAG
GATGTGAAAGGGCACCTGTGCGATGTGTGGGCGCAGTCGAGTTCTCTTCA
CCACCCCTTCGTCACCTACTTTGCCGACGCGCAGACGGAAAGGCCCTGGC
GCTGGATTTTCTTCGATGGAGCGATATTCGACGTGAGTCTCTAGGCAACG
TATGGGTGCATGTGTTCTGCGCCTTTTGCTTCAAAATTGACTTTGTCGAG
GCGTGCGCTGGTCTGTCTCGGGTTATGAGGGTGACATCGCGAAGTTGTAA
GACTCGCCGATGACGTGGACATGACGCCGCTTATGTGACCAATACTGATG
CCTCTCTCCACATATTTTGAAGGTACTTGAATGGACTCCAGGGGGCActt
tggaggacgaggcgtgGCAACTTCCGGCCTACTGCTTCGAGAAGGATAGA
AAAGACTTCTTGTCGGATGGGCAGGTGCAACAATCGGAGGGTGTGGCACA
GATGTGAGAGGGTAGAGAACCTTCCATGGTATCGAGTTGTGAGCGGCGAG
AGATCAGTAATGCGAGGACGGGCCTCGACTGTGATGGCACACAGTCTGTC
ATGCGTATCAAAATGAAAGCACCTGATGTGTACATTCTCGAttgctcttc
ctttctttcgcCCTCTGTGGGTCTTTTCCAGACACAGATGGATCGACACT
GCATATATGGTACATACGGCTACATGATCACTTGGTATGCATGCCTCGTT
CATTCTGTATGGCTCAGCTTCTGAGCAGTACACGCTTATAACTCGAGTCT
GATAGACGGACTTATTTGATCTTATGAATATATATGACAATTTTTtacat
ttttttcccattgTTATGTTGTTCGGGTTAGGGTGATGATCGATTCCTTT
TAATTGTCAATAATTTGTG

Coding sequence (CDS) from alignment at KK037247.1:542785..544853+

>rna8092 ID=rna8092|Name=rna8092|organism=Nannochloropsis gaditana|type=CDS|length=2676bp|location=Sequence derived from alignment at KK037247.1:542785..544853+ (Nannochloropsis gaditana)
ATGTCCATGGGTACCTGCTACACCCGCTGTAGCATTATACTGCTTTGTAT
CTCGAGTCTTCTACAGATTGGTCTAGTCCACTCGCGTCTTGGATATGCAA
GCGAACAGTTGACTAAAAAAACACCTCCAGTCTGGCCACCGCAGCTCACA
GCACTTTTGCTGCAAAATCGCGGCGGCAACCTAAGCGACACCACCCTCGC
CTACGATCTGCCCAATGGTAGGAATCTGAACATCATCAAAGACAGACAGA
CCGGCTTGACCCTCTGGGACAACGAGCGGGCGAATGGCTCCACCTACTAC
TACCACAAGGCCCCGGAGGCAGAAAGTTGCCAAGCGCTGAACATGCACGT
CGGCATCCTGAAACCGGACTGGCTGGCGGGGGCGCGCTATAAGGGCATGG
AGGATGTGAAAGGGCACCTGTGCGATGTGTGGGCGCAGTCGAGTTCTCTT
CACCACCCCTTCGTCACCTACTTTGCCGACGCGCAGACGGAAAGGCCCTG
GCGCTGGATTTTCTTCGATGGAGCGATATTCGACGTACTTGAATGGACTC
CAGGGGGCActttggaggacgaggcgtgGCAACTTCCGGCCTACTGCTTC
GAGAAGGATAGAAAAGACTTCTTGTCGGATGGGCAGGTGCAACAATCGGA
GGGTGTGGCACAGATGTGAATGTCCATGGGTACCTGCTACACCCGCTGTA
GCATTATACTGCTTTGTATCTCGAGTCTTCTACAGATTGGTCTAGTCCAC
TCGCGTCTTGGATATGCAAGCGAACAGTTGACTAAAAAAACACCTCCAGT
CTGGCCACCGCAGCTCACAGCACTTTTGCTGCAAAATCGCGGCGGCAACC
TAAGCGACACCACCCTCGCCTACGATCTGCCCAATGGTAGGAATCTGAAC
ATCATCAAAGACAGACAGACCGGCTTGACCCTCTGGGACAACGAGCGGGC
GAATGGCTCCACCTACTACTACCACAAGGCCCCGGAGGCAGAAAGTTGCC
AAGCGCTGAACATGCACGTCGGCATCCTGAAACCGGACTGGCTGGCGGGG
GCGCGCTATAAGGGCATGGAGGATGTGAAAGGGCACCTGTGCGATGTGTG
GGCGCAGTCGAGTTCTCTTCACCACCCCTTCGTCACCTACTTTGCCGACG
CGCAGACGGAAAGGCCCTGGCGCTGGATTTTCTTCGATGGAGCGATATTC
GACGTACTTGAATGGACTCCAGGGGGCActttggaggacgaggcgtgGCA
ACTTCCGGCCTACTGCTTCGAGAAGGATAGAAAAGACTTCTTGTCGGATG
GGCAGGTGCAACAATCGGAGGGTGTGGCACAGATGTGAATGTCCATGGGT
ACCTGCTACACCCGCTGTAGCATTATACTGCTTTGTATCTCGAGTCTTCT
ACAGATTGGTCTAGTCCACTCGCGTCTTGGATATGCAAGCGAACAGTTGA
CTAAAAAAACACCTCCAGTCTGGCCACCGCAGCTCACAGCACTTTTGCTG
CAAAATCGCGGCGGCAACCTAAGCGACACCACCCTCGCCTACGATCTGCC
CAATGGTAGGAATCTGAACATCATCAAAGACAGACAGACCGGCTTGACCC
TCTGGGACAACGAGCGGGCGAATGGCTCCACCTACTACTACCACAAGGCC
CCGGAGGCAGAAAGTTGCCAAGCGCTGAACATGCACGTCGGCATCCTGAA
ACCGGACTGGCTGGCGGGGGCGCGCTATAAGGGCATGGAGGATGTGAAAG
GGCACCTGTGCGATGTGTGGGCGCAGTCGAGTTCTCTTCACCACCCCTTC
GTCACCTACTTTGCCGACGCGCAGACGGAAAGGCCCTGGCGCTGGATTTT
CTTCGATGGAGCGATATTCGACGTACTTGAATGGACTCCAGGGGGCActt
tggaggacgaggcgtgGCAACTTCCGGCCTACTGCTTCGAGAAGGATAGA
AAAGACTTCTTGTCGGATGGGCAGGTGCAACAATCGGAGGGTGTGGCACA
GATGTGAATGTCCATGGGTACCTGCTACACCCGCTGTAGCATTATACTGC
TTTGTATCTCGAGTCTTCTACAGATTGGTCTAGTCCACTCGCGTCTTGGA
TATGCAAGCGAACAGTTGACTAAAAAAACACCTCCAGTCTGGCCACCGCA
GCTCACAGCACTTTTGCTGCAAAATCGCGGCGGCAACCTAAGCGACACCA
CCCTCGCCTACGATCTGCCCAATGGTAGGAATCTGAACATCATCAAAGAC
AGACAGACCGGCTTGACCCTCTGGGACAACGAGCGGGCGAATGGCTCCAC
CTACTACTACCACAAGGCCCCGGAGGCAGAAAGTTGCCAAGCGCTGAACA
TGCACGTCGGCATCCTGAAACCGGACTGGCTGGCGGGGGCGCGCTATAAG
GGCATGGAGGATGTGAAAGGGCACCTGTGCGATGTGTGGGCGCAGTCGAG
TTCTCTTCACCACCCCTTCGTCACCTACTTTGCCGACGCGCAGACGGAAA
GGCCCTGGCGCTGGATTTTCTTCGATGGAGCGATATTCGACGTACTTGAA
TGGACTCCAGGGGGCActttggaggacgaggcgtgGCAACTTCCGGCCTA
CTGCTTCGAGAAGGATAGAAAAGACTTCTTGTCGGATGGGCAGGTGCAAC
AATCGGAGGGTGTGGCACAGATGTGA

Synonyms

Publications