rna809, rna809 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna809
Unique Name	rna809
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1357
Alignment location	CM002456.1:470858..473078 +

Link to JBrowse

Properties


Property Name	Value
Product	meiotic recombination 11
Orig transcript id	gnl\|cribi\|Naga_100106g23.1458.mrna
Orig protein id	gnl\|cribi\|Naga_100106g23.1458
Gene	MRE11
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:470858..473078 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MRE11	gene775	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna809	rna809-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29884.1	cds809	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:470858..473078+
coding sequence from alignment at CM002456.1:470858..473078+

mRNA sequence

>rna809 ID=rna809|Name=rna809|organism=Nannochloropsis gaditana|type=mRNA|length=1357bp
GATGTCTTTCACATGGCCTACGCTTTGGGCGTCCGTACTCCTGCTTTTTT
GGGCACAATGTCCAAGCGCTGTTTCCTTCACCTTGACGGGCCATGGCGAC
CTCCCCCGCCCTCGTCGACCTCCCCCCGCCCTCTTCATTGCCACCATGTC
CACGCATCCTGCGAATGACCAAGACAGCAGGGCTGTACCAGCACGGCCAA
CCAATCTAGATATTGATCGACGGGGGGTTTTGGCTGCTGGAACGGGCATG
TTTGCGTCCTCCTGGCTCTTGACCGCTCCCTCCACCTCAACCACGCCGGC
CGTCGTTCATGCTACCACGACGCTCCAACCTCCTTCCCAAGCCAGTCTAA
AACCTAGTGGACTGTGTGACGACGCCATCTCACATCTTCGTAACCCTAAG
ACCGGCCAAGACATTTATATGATCGGTACAGCGCATATAAGCAACGCTAG
TGCACTCCTAGTGCGCTCCACCATCCGCGAGCTCCGCCCGCAGACGGTGA
TGCTAGAGCTGGACGCCAGCCGTATCGGCCGCCTTGCCAAAAATACCTCG
AATTCTATCCCAAAGCCCTCTTCGATGGGCAGGTCGGAGCCGAGTCGACG
CGTGGTCATCGTCGCGTCAAGCAGCAGTGACAGTCCTGACGTTCCCCCGG
CTACCTTTGTCATCCCAGGTCCGGCGTCCACCGCCCTCCAACCCCCACCC
TCCGATCCAGGCTTCCTCTCAAAGCAAGAAGAGGGGAAAGCCGGCTTTTT
GCGCGCGGCCTTGGGAGAGCTGACGCGGGTGGGTAGCGGCTTCCGGGAGC
GCTTGGTGGGCCTCGGCGCGATGGTTGTGGGGCAGGTCATCTCGGGGCTC
TACCGGGGCCTGGACAAAATGGGCTTCGTGTCCGGGCAGGAATTCATAGT
CGCCATTGACGAGGGCCGAAAAGTGGGCGCGGACCTGCTGCTGGGCGACC
AGGACGTGCAAGTGACGCTTCGACGCTTGTCGGATGCGCTGTCCCGGAGT
GAACTGGGAAAAGTGCGCGAAATGGAGTCCCCTACCCGCTCCCCCGCCGC
GAGGGAGCTGGAGGCCCGCGGCATTAGAATGGGGGACAATGCGGCGGATA
TCTCGGTGGCCATGGAGGCACTGAAAGAGCGCTCGTCTGTGCGCACGCTC
ATGGCAAGCTTGCAACAGGAGCTGCCGGAAGTGTACAAGGCGATGATCGA
GGAGAGGGACGCCTACATGACGGCTTCGTTGCTGGGCTGCGGAAGTCAGA
CAATCGTGGGAGTCGTGGGCATCGGTCATCTAGACGGAATTGAGAGGAAC
TTGGGAAGGGAGGGTTTTGTGCGGGTTCCGTGTCGGCCAGAGCCGGTCAG
GCGGTAG

protein sequence of rna809

>rna809-protein ID=rna809-protein|Name=rna809|organism=Nannochloropsis gaditana|type=polypeptide|length=454bp
MDQLLEPPDEDTLRVMIATDNHVGFLERDPVRGLDSFAALEEIFLRAKEY
HVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQ
GEGQEASPPAFSHVNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEPLSAMD
LLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRM
WQKKKIKFLRHAPRERGAAPDFFSLFALHQNRDTGRGQKNCVQESMIPEW
MDLVVWGHEHECLVRPTRSLAGGFYISQPGSSVATSLVEGEATPKQVGVL
DVREGNFRLFPVPLRQVRAFILKEVRLSALAGLDPHHPRAEEQVQAALER
EVRALIHEAREDHPPPAPPWAVLAPPAPGAGLGAPEGGVLGFLHPQQPTL
WAAFPGPGREPFRHPPLLPGAEGGARGRGEPGTGGRGAEWRGRVGRGCGG
SGRR

mRNA from alignment at CM002456.1:470858..473078+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna809 ID=rna809|Name=rna809|organism=Nannochloropsis gaditana|type=mRNA|length=2221bp|location=Sequence derived from alignment at CM002456.1:470858..473078+ (Nannochloropsis gaditana)
CGACGTATGCTTTTCCCGGTCTACATCTCATTGCTTTTCTTCGAGTACGC
CACGATTGATGGAGAGCGTAGAGTTTGTGCCAAAGATATCGTAAAACAAC
CTCTTTTCGTACGCACCCAGTTCTTGAtttcgtcctctcccttccacagC
CCCCACcgtcactcctccctcttgaacCTTCCTCTGACCTCAACGCACCC
ATGGACCAACTTCTGGAGCCACCCGATGAGGACACGTTGCGTGTCATGAT
TGCGACGGACAACCACGTGGGCTTTCTGGAGCGTGACCCTGTGCGGGGGC
TGGATTCCTTCGCCGCTTTGGAGGGTAGGGTGGAGGCCTCATCCTTGTAC
ACCCCGTCTTGACGTGCCTCTCTCACGCATTGAGCTCGTGCTTCTCGATG
AAAGATCAGTGTGGATCGCTCGTACTGTCCTGTACCCATTTcgttcccca
ccctctccccttcctgcttgcctccctccctctcccgccctcccggtCCC
AGAGATCTTCCTCCGGGCGAAAGAGTACCACGTGgacttcgtcctccttg
gggGCGACCTCTTCCACGAAAACAAGCCCTCGCGCAAGACGCTGCACTCC
ACGATGGCCATCCTCCGCCGGCACTGTCTGGGGAGCacgcccgtctcctt
ccaggTCATCTCCGACCCGGCGCCGCAAGGAGAGGGCCAGgaggcctccc
cgcccgccttctcccacgTGAACTACGAGGACCCGAACTACGCCGTGGGc
ctgcccgtcttctccatccACGGGAACCACGACGACCCCACGCGGGACGG
GCCCTCGGAGCCCCTGTCGGCCATGGACCTGCTGGGGATGACGAACCTGG
TCAACTACTTCGGGAAGGCATCCGCCACGGACgccgtggaggtggcgcCT
CTCCTTTTGCAGAAGGGCCGGACCTGCATGGCCCTGTACGGCCTCGGGAA
CATGCGGGACGAGCGCCTGAACCGGATGTggcagaaaaagaaaatcaagT
TCCTTCGGCACGCGcctcgggaaagaggggcggcGCCggacttcttctcc
ttgttcgCGCTGCACCAGAACCGAGACACGGGCCGCGGGCAGAAGAACTG
CGTGCAGGAAAGCATGATCCCGGAGTGGATGGACTTGGTGGTGTGGGGGT
AAGcccggcgagggagggagggagaacttgacagagacggaggagggagg
aatccATCATCAAGGTTGCCTGGTCGAGACACTCCCTGtaccatcccttc
ctccccttccccttcccctcccccctcctccgcgcaGGCACGAGCACGAA
TGCTTGGTCCGCCCGACGCGCTCCCTGGCCGGGGGCTTCTACATCTCCCA
GCCGGGCTCCTCGgtcgccacctccctcgtggagggagaggccacGCCCA
AGCAAGTGGGCGTCCTGGACGTGCGAGAGGGGAACTTCCGGCTCTTTCCC
GTGCCGCTCCGACAggtctgtccctccccccctccctctcttcctccctc
tccccaggCTCACTTCACCTCAACATCATCGCACCGATAAAGGAGCAcat
gctctccctccttccctccctccttcgctccttcccttctcttctaTTCG
CCATATCCCATGATTGCACCACGTCTGAAGAggatttcctccctccctcc
cgcccgcactccctctctccctccctccctccctccctgcaggtGCGCGC
CTTCATCCTCAAAGAAGTCCGGCTCTCGGCCCTGGCAGGCCTCGATCCGC
ACCATCCCCGCGCCGAGGAGCAGGtccaggcggccttggaaagggaggtt
cGGGCCCTGATTCACGAGGCCCGCGAGGaccaccccccccccgcccctcc
ctgggCAGTGCTTGCGCCTCCGGCACCCGGAGCAGGTCTTGGTGCGCCTG
AAGGTGGAGTACTCGGGTTTCTTCACCCTCAACAACCAACGCTTTGGGCA
GCGTTTCCTGGGCCAGGTCGCGAACCCTTccgacatcctcctcttctacc
gggcgcggaagggggagcgcggggacggggggagccggggacgggggggc
ggggggccgagtggcgagggagggtcgggcgggggtgtggggggagcggg
aggaggtgaaggtggaggacttggtccggctggaggtggaggagtcgGAG
AAGAAGTTGAAGCTGATGACGGAGCCGGAGCTGcacgaggcgctggagga
ctTTGTGAGCAAGAACACGGC

Coding sequence (CDS) from alignment at CM002456.1:470858..473078+

>rna809 ID=rna809|Name=rna809|organism=Nannochloropsis gaditana|type=CDS|length=5460bp|location=Sequence derived from alignment at CM002456.1:470858..473078+ (Nannochloropsis gaditana)
ATGGACCAACTTCTGGAGCCACCCGATGAGGACACGTTGCGTGTCATGAT
TGCGACGGACAACCACGTGGGCTTTCTGGAGCGTGACCCTGTGCGGGGGC
TGGATTCCTTCGCCGCTTTGGAGGAGATCTTCCTCCGGGCGAAAGAGTAC
CACGTGgacttcgtcctccttggggGCGACCTCTTCCACGAAAACAAGCC
CTCGCGCAAGACGCTGCACTCCACGATGGCCATCCTCCGCCGGCACTGTC
TGGGGAGCacgcccgtctccttccaggTCATCTCCGACCCGGCGCCGCAA
GGAGAGGGCCAGgaggcctccccgcccgccttctcccacgTGAACTACGA
GGACCCGAACTACGCCGTGGGcctgcccgtcttctccatccACGGGAACC
ACGACGACCCCACGCGGGACGGGCCCTCGGAGCCCCTGTCGGCCATGGAC
CTGCTGGGGATGACGAACCTGGTCAACTACTTCGGGAAGGCATCCGCCAC
GGACgccgtggaggtggcgcCTCTCCTTTTGCAGAAGGGCCGGACCTGCA
TGGCCCTGTACGGCCTCGGGAACATGCGGGACGAGCGCCTGAACCGGATG
TggcagaaaaagaaaatcaagTTCCTTCGGCACGCGcctcgggaaagagg
ggcggcGCCggacttcttctccttgttcgCGCTGCACCAGAACCGAGACA
CGGGCCGCGGGCAGAAGAACTGCGTGCAGGAAAGCATGATCCCGGAGTGG
ATGGACTTGGTGGTGTGGGGGCACGAGCACGAATGCTTGGTCCGCCCGAC
GCGCTCCCTGGCCGGGGGCTTCTACATCTCCCAGCCGGGCTCCTCGgtcg
ccacctccctcgtggagggagaggccacGCCCAAGCAAGTGGGCGTCCTG
GACGTGCGAGAGGGGAACTTCCGGCTCTTTCCCGTGCCGCTCCGACAggt
GCGCGCCTTCATCCTCAAAGAAGTCCGGCTCTCGGCCCTGGCAGGCCTCG
ATCCGCACCATCCCCGCGCCGAGGAGCAGGtccaggcggccttggaaagg
gaggttcGGGCCCTGATTCACGAGGCCCGCGAGGaccaccccccccccgc
ccctccctgggCAGTGCTTGCGCCTCCGGCACCCGGAGCAGGTCTTGGTG
CGCCTGAAGGTGGAGTACTCGGGTTTCTTCACCCTCAACAACCAACGCTT
TGGGCAGCGTTTCCTGGGCCAGGTCGCGAACCCTTccgacatcctcctct
tctaccgggcgcggaagggggagcgcggggacggggggagccggggacgg
gggggcggggggccgagtggcgagggagggtcgggcgggggtgtgggggg
agcgggaggaggtgaATGGACCAACTTCTGGAGCCACCCGATGAGGACAC
GTTGCGTGTCATGATTGCGACGGACAACCACGTGGGCTTTCTGGAGCGTG
ACCCTGTGCGGGGGCTGGATTCCTTCGCCGCTTTGGAGGAGATCTTCCTC
CGGGCGAAAGAGTACCACGTGgacttcgtcctccttggggGCGACCTCTT
CCACGAAAACAAGCCCTCGCGCAAGACGCTGCACTCCACGATGGCCATCC
TCCGCCGGCACTGTCTGGGGAGCacgcccgtctccttccaggTCATCTCC
GACCCGGCGCCGCAAGGAGAGGGCCAGgaggcctccccgcccgccttctc
ccacgTGAACTACGAGGACCCGAACTACGCCGTGGGcctgcccgtcttct
ccatccACGGGAACCACGACGACCCCACGCGGGACGGGCCCTCGGAGCCC
CTGTCGGCCATGGACCTGCTGGGGATGACGAACCTGGTCAACTACTTCGG
GAAGGCATCCGCCACGGACgccgtggaggtggcgcCTCTCCTTTTGCAGA
AGGGCCGGACCTGCATGGCCCTGTACGGCCTCGGGAACATGCGGGACGAG
CGCCTGAACCGGATGTggcagaaaaagaaaatcaagTTCCTTCGGCACGC
GcctcgggaaagaggggcggcGCCggacttcttctccttgttcgCGCTGC
ACCAGAACCGAGACACGGGCCGCGGGCAGAAGAACTGCGTGCAGGAAAGC
ATGATCCCGGAGTGGATGGACTTGGTGGTGTGGGGGCACGAGCACGAATG
CTTGGTCCGCCCGACGCGCTCCCTGGCCGGGGGCTTCTACATCTCCCAGC
CGGGCTCCTCGgtcgccacctccctcgtggagggagaggccacGCCCAAG
CAAGTGGGCGTCCTGGACGTGCGAGAGGGGAACTTCCGGCTCTTTCCCGT
GCCGCTCCGACAggtGCGCGCCTTCATCCTCAAAGAAGTCCGGCTCTCGG
CCCTGGCAGGCCTCGATCCGCACCATCCCCGCGCCGAGGAGCAGGtccag
gcggccttggaaagggaggttcGGGCCCTGATTCACGAGGCCCGCGAGGa
ccaccccccccccgcccctccctgggCAGTGCTTGCGCCTCCGGCACCCG
GAGCAGGTCTTGGTGCGCCTGAAGGTGGAGTACTCGGGTTTCTTCACCCT
CAACAACCAACGCTTTGGGCAGCGTTTCCTGGGCCAGGTCGCGAACCCTT
ccgacatcctcctcttctaccgggcgcggaagggggagcgcggggacggg
gggagccggggacgggggggcggggggccgagtggcgagggagggtcggg
cgggggtgtggggggagcgggaggaggtgaATGGACCAACTTCTGGAGCC
ACCCGATGAGGACACGTTGCGTGTCATGATTGCGACGGACAACCACGTGG
GCTTTCTGGAGCGTGACCCTGTGCGGGGGCTGGATTCCTTCGCCGCTTTG
GAGGAGATCTTCCTCCGGGCGAAAGAGTACCACGTGgacttcgtcctcct
tggggGCGACCTCTTCCACGAAAACAAGCCCTCGCGCAAGACGCTGCACT
CCACGATGGCCATCCTCCGCCGGCACTGTCTGGGGAGCacgcccgtctcc
ttccaggTCATCTCCGACCCGGCGCCGCAAGGAGAGGGCCAGgaggcctc
cccgcccgccttctcccacgTGAACTACGAGGACCCGAACTACGCCGTGG
GcctgcccgtcttctccatccACGGGAACCACGACGACCCCACGCGGGAC
GGGCCCTCGGAGCCCCTGTCGGCCATGGACCTGCTGGGGATGACGAACCT
GGTCAACTACTTCGGGAAGGCATCCGCCACGGACgccgtggaggtggcgc
CTCTCCTTTTGCAGAAGGGCCGGACCTGCATGGCCCTGTACGGCCTCGGG
AACATGCGGGACGAGCGCCTGAACCGGATGTggcagaaaaagaaaatcaa
gTTCCTTCGGCACGCGcctcgggaaagaggggcggcGCCggacttcttct
ccttgttcgCGCTGCACCAGAACCGAGACACGGGCCGCGGGCAGAAGAAC
TGCGTGCAGGAAAGCATGATCCCGGAGTGGATGGACTTGGTGGTGTGGGG
GCACGAGCACGAATGCTTGGTCCGCCCGACGCGCTCCCTGGCCGGGGGCT
TCTACATCTCCCAGCCGGGCTCCTCGgtcgccacctccctcgtggaggga
gaggccacGCCCAAGCAAGTGGGCGTCCTGGACGTGCGAGAGGGGAACTT
CCGGCTCTTTCCCGTGCCGCTCCGACAggtGCGCGCCTTCATCCTCAAAG
AAGTCCGGCTCTCGGCCCTGGCAGGCCTCGATCCGCACCATCCCCGCGCC
GAGGAGCAGGtccaggcggccttggaaagggaggttcGGGCCCTGATTCA
CGAGGCCCGCGAGGaccaccccccccccgcccctccctgggCAGTGCTTG
CGCCTCCGGCACCCGGAGCAGGTCTTGGTGCGCCTGAAGGTGGAGTACTC
GGGTTTCTTCACCCTCAACAACCAACGCTTTGGGCAGCGTTTCCTGGGCC
AGGTCGCGAACCCTTccgacatcctcctcttctaccgggcgcggaagggg
gagcgcggggacggggggagccggggacgggggggcggggggccgagtgg
cgagggagggtcgggcgggggtgtggggggagcgggaggaggtgaATGGA
CCAACTTCTGGAGCCACCCGATGAGGACACGTTGCGTGTCATGATTGCGA
CGGACAACCACGTGGGCTTTCTGGAGCGTGACCCTGTGCGGGGGCTGGAT
TCCTTCGCCGCTTTGGAGGAGATCTTCCTCCGGGCGAAAGAGTACCACGT
GgacttcgtcctccttggggGCGACCTCTTCCACGAAAACAAGCCCTCGC
GCAAGACGCTGCACTCCACGATGGCCATCCTCCGCCGGCACTGTCTGGGG
AGCacgcccgtctccttccaggTCATCTCCGACCCGGCGCCGCAAGGAGA
GGGCCAGgaggcctccccgcccgccttctcccacgTGAACTACGAGGACC
CGAACTACGCCGTGGGcctgcccgtcttctccatccACGGGAACCACGAC
GACCCCACGCGGGACGGGCCCTCGGAGCCCCTGTCGGCCATGGACCTGCT
GGGGATGACGAACCTGGTCAACTACTTCGGGAAGGCATCCGCCACGGACg
ccgtggaggtggcgcCTCTCCTTTTGCAGAAGGGCCGGACCTGCATGGCC
CTGTACGGCCTCGGGAACATGCGGGACGAGCGCCTGAACCGGATGTggca
gaaaaagaaaatcaagTTCCTTCGGCACGCGcctcgggaaagaggggcgg
cGCCggacttcttctccttgttcgCGCTGCACCAGAACCGAGACACGGGC
CGCGGGCAGAAGAACTGCGTGCAGGAAAGCATGATCCCGGAGTGGATGGA
CTTGGTGGTGTGGGGGCACGAGCACGAATGCTTGGTCCGCCCGACGCGCT
CCCTGGCCGGGGGCTTCTACATCTCCCAGCCGGGCTCCTCGgtcgccacc
tccctcgtggagggagaggccacGCCCAAGCAAGTGGGCGTCCTGGACGT
GCGAGAGGGGAACTTCCGGCTCTTTCCCGTGCCGCTCCGACAggtGCGCG
CCTTCATCCTCAAAGAAGTCCGGCTCTCGGCCCTGGCAGGCCTCGATCCG
CACCATCCCCGCGCCGAGGAGCAGGtccaggcggccttggaaagggaggt
tcGGGCCCTGATTCACGAGGCCCGCGAGGaccaccccccccccgcccctc
cctgggCAGTGCTTGCGCCTCCGGCACCCGGAGCAGGTCTTGGTGCGCCT
GAAGGTGGAGTACTCGGGTTTCTTCACCCTCAACAACCAACGCTTTGGGC
AGCGTTTCCTGGGCCAGGTCGCGAACCCTTccgacatcctcctcttctac
cgggcgcggaagggggagcgcggggacggggggagccggggacggggggg
cggggggccgagtggcgagggagggtcgggcgggggtgtggggggagcgg
gaggaggtga

Synonyms

Publications