EWM29884.1, cds809 (CDS) Nannochloropsis gaditana

Overview
NameEWM29884.1
Unique Namecds809
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:471058..471181 +
Alignment locationCM002456.1:471360..472005 +
Alignment locationCM002456.1:472145..472322 +
Alignment locationCM002456.1:472550..472966 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29884.1
Productmeiotic recombination 11
Orig transcript idgnl|cribi|Naga_100106g23.1458.mrna
GeneMRE11
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:471058..471181 +
CM002456.1supercontigCM002456.1:471360..472005 +
CM002456.1supercontigCM002456.1:472145..472322 +
CM002456.1supercontigCM002456.1:472550..472966 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0000003reproduction
GO:0007049cell cycle
GO:0006950response to stress
GO:0016043cellular component organization
GO:0006259DNA metabolic process
GO:0006302double-strand break repair
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0004518nuclease activity
GO:0004527exonuclease activity
GO:0016787hydrolase activity
GO:0004519endonuclease activity
GO:0030145manganese ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR003701DNA_repair_Mre11
IPR004843Calcineurin-like_PHP_apaH
IPR029052Metallo-depent_PP-like
IPR007281Mre11_DNA-bd
Homology
BLAST of EWM29884.1 vs. NCBI_GenBank
Match: gi|585112466|gb|EWM29884.1| (meiotic recombination 11 [Nannochloropsis gaditana])

HSP 1 Score: 921.383 bits (2380), Expect = 0.000e+0
Identity = 454/454 (100.00%), Postives = 454/454 (100.00%), Query Frame = 0
Query:    1 MDQLLEPPDEDTLRVMIATDNHVGFLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEASPPAFSHVNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHAPRERGAAPDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFYISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVPLRQVRAFILKEVRLSALAGLDPHHPRAEEQVQAALEREVRALIHEAREDHPPPAPPWAVLAPPAPGAGLGAPEGGVLGFLHPQQPTLWAAFPGPGREPFRHPPLLPGAEGGARGRGEPGTGGRGAEWRGRVGRGCGGSGRR 454
            MDQLLEPPDEDTLRVMIATDNHVGFLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEASPPAFSHVNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHAPRERGAAPDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFYISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVPLRQVRAFILKEVRLSALAGLDPHHPRAEEQVQAALEREVRALIHEAREDHPPPAPPWAVLAPPAPGAGLGAPEGGVLGFLHPQQPTLWAAFPGPGREPFRHPPLLPGAEGGARGRGEPGTGGRGAEWRGRVGRGCGGSGRR
Sbjct:    1 MDQLLEPPDEDTLRVMIATDNHVGFLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEASPPAFSHVNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHAPRERGAAPDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFYISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVPLRQVRAFILKEVRLSALAGLDPHHPRAEEQVQAALEREVRALIHEAREDHPPPAPPWAVLAPPAPGAGLGAPEGGVLGFLHPQQPTLWAAFPGPGREPFRHPPLLPGAEGGARGRGEPGTGGRGAEWRGRVGRGCGGSGRR 454          
BLAST of EWM29884.1 vs. NCBI_GenBank
Match: gi|298707467|emb|CBJ30090.1| (meiotic recombination 11 [Ectocarpus siliculosus])

HSP 1 Score: 435.261 bits (1118), Expect = 1.436e-140
Identity = 217/377 (57.56%), Postives = 266/377 (70.56%), Query Frame = 0
Query:   16 MIATDNHVG--FLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEASPPAFSHVNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHAPRERGAAPDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECL----------------------------VRPTRSLAGGFYISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVPLRQVRAFILKEVRLSALAGLDPHHPRAEEQVQAALEREVRALIHEARED 362
            M+ATD+H+G  ++ERDPVRG DSFAA EE+ L AKE  VDFVLLGGDLFHENKPSR+TL+ TM ILRRHC+G  PVSFQ+IS+ A   + +      F HVNYEDP ++VGLP+FSIHGNHDDPTR+G  E L+A+DLL + NLVNYFGK++  D VEV P+L+QKG T +ALYG+G+MRDERLNRMWQ+KK++FLR  P E     DFF++F LHQNRD GRG+KNC+ ESMIPEW+DLV+WGHEHEC                             V P  SL G F ISQPGSSVATSL EGEA PK VG+L++R  +FRL  VPL QVR F + E+ LS + GLD      +E V  AL  +V  ++ E R++
Sbjct:    1 MVATDSHLGRVYMERDPVRGKDSFAAFEEMLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDR------FGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLR--PLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQVLAFADPWLCVPGGGAEKGASCFQTQLEVEPMESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQVRPFRMGEIVLSEVDGLDSKGANVDEAVGEALANQVEQMVEELRKE 369          
BLAST of EWM29884.1 vs. NCBI_GenBank
Match: gi|224002274|ref|XP_002290809.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220974231|gb|EED92561.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 418.313 bits (1074), Expect = 8.385e-140
Identity = 203/352 (57.67%), Postives = 254/352 (72.16%), Query Frame = 0
Query:    9 DEDTLRVMIATDNHVGFLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEASPPAFSHVNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHAPRERGAAPDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFYISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVPLRQVRAFILKEVRLSALAG----LDPHHPRAEEQVQAALEREVRALI 356
            D++TLRV+++TDNH+G+LERDP+RGLDSFAA EE+   A+    D VLL GD+FH+NKPSR+TLH TM ILRR+C+G   V FQ++SD     + +          NYED  Y+V +P+F+IHGNHDDPTRDG +E LSA+DLL ++NL+NYFG+    D V+V+P+LLQKG T +ALYG+G+MRDERLNRMWQ KK+KFLR  P E      +F++F LHQNRD GRG KNCV ESMIPEWMDLVVWGHEHECL+ P  SL G F ISQPGSSVATSL +GE   K VG+LD+R   FRL  +PL  VR F + +V L+ LA     LD   P+ EE++   L  EV  L+
Sbjct:    1 DDNTLRVLLSTDNHLGYLERDPIRGLDSFAAFEEVLSLARSQKADLVLLSGDVFHDNKPSRRTLHKTMEILRRYCMGGESVGFQIVSD-----QKECLRSVVTGRANYEDEYYSVDMPIFAIHGNHDDPTRDGGTELLSALDLLSVSNLINYFGRQDQVDNVQVSPVLLQKGGTKVALYGMGSMRDERLNRMWQGKKVKFLR--PEEDDNR--WFNIFTLHQNRDLGRGSKNCVHESMIPEWMDLVVWGHEHECLITPQESLVGTFRISQPGSSVATSLTQGEGRQKHVGILDIRGQQFRLKSIPLGSVRGFAIGDVSLTELAEGGTVLDIEDPKLEERMGDVLAAEVENLV 343          
BLAST of EWM29884.1 vs. NCBI_GenBank
Match: gi|219122146|ref|XP_002181413.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407399|gb|EEC47336.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 419.853 bits (1078), Expect = 2.166e-139
Identity = 208/356 (58.43%), Postives = 266/356 (74.72%), Query Frame = 0
Query:    4 LLEPPDEDTLRVMIATDNHVGFLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEASPPAFSHVNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHAPRERGAAPD--FFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFYISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVPLRQVRAFILKEVRLSA-LAGLDPHHPRAEEQVQAALEREVRALI 356
            +LE PDE TLR+M++TDNH+G+ E+DPVRG+DSFAA EE+   AK++  D VL+ GDLFH+N+PSR+TL+ TM I+RR+C+G  PV  Q++SD A        +      VNY+D NY+V LP+FSIHGNHDDPTRD   E L+A+DLL ++NLVNYFG+    D VE++P+L+QKG T +ALYG+G+MRDERLNRMWQ KK++FLR A  +     D  FF+LF LHQNRD GRG KNCVQESMIPEWMDLVVWGHEHECL+  + S+ G F I+QPGSSVATSLV GEA  K+VGV+DV+  NFR+  VPL QVR+F+  E+ L    A LDP  P+ +++V   LE +VR +I
Sbjct:   23 VLEDPDEHTLRMMLSTDNHLGYAEKDPVRGMDSFAAFEEVLYLAKQFRCDMVLIAGDLFHDNRPSRRTLYITMEIIRRYCMGPDPVRIQIVSDQAQNFRNVSGT------VNYQDDNYSVDLPIFSIHGNHDDPTRDSHGELLAALDLLAVSNLVNYFGRQEQVDQVEISPVLIQKGATQLALYGMGSMRDERLNRMWQGKKVRFLRPAEDDEDNEHDTGFFNLFTLHQNRDLGRGSKNCVQESMIPEWMDLVVWGHEHECLIEFSESVVGTFRITQPGSSVATSLVAGEAVRKKVGVVDVQGKNFRMHTVPLTQVRSFVTAELSLQEHRANLDPDDPKIDDKVTNILEEQVRGMI 372          
BLAST of EWM29884.1 vs. NCBI_GenBank
Match: gi|219122144|ref|XP_002181412.1| (Mre11 DNA repair/recombination protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407398|gb|EEC47335.1| Mre11 DNA repair/recombination protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 424.861 bits (1091), Expect = 4.711e-138
Identity = 218/400 (54.50%), Postives = 281/400 (70.25%), Query Frame = 0
Query:    4 LLEPPDEDTLRVMIATDNHVGFLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEASPPAFSHVNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHAPRERGAAPD--FFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFYISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVPLRQVRAFILKEVRLSA-LAGLDPHHPRAEEQVQAALEREVRALIHEAREDHPPPAPPWAVLAPPAPGAGLGAPEGGVLGFLHPQQPTL 400
            +LE PDE TLR+M++TDNH+G+ E+DPVRG+DSFAA EE+   AK++  D VL+ GDLFH+N+PSR+TL+ TM I+RR+C+G  PV  Q++SD A        +      VNY+D NY+V LP+FSIHGNHDDPTRD   E L+A+DLL ++NLVNYFG+    D VE++P+L+QKG T +ALYG+G+MRDERLNRMWQ KK++FLR A  +     D  FF+LF LHQNRD GRG KNCVQESMIPEWMDLVVWGHEHECL+  + S+ G F I+QPGSSVATSLV GEA  K+VGV+DV+  NFR+  VPL QVR+F+  E+ L    A LDP  P+ +++V   LE +VR L+  ARE          +    A G+  G  +    G + P + TL
Sbjct:   23 VLEDPDEHTLRMMLSTDNHLGYAEKDPVRGMDSFAAFEEVLYLAKQFRCDMVLIAGDLFHDNRPSRRTLYITMEIIRRYCMGPDPVRIQIVSDQAQNFRNVSGT------VNYQDDNYSVDLPIFSIHGNHDDPTRDSHGELLAALDLLAVSNLVNYFGRQEQVDQVEISPVLIQKGATQLALYGMGSMRDERLNRMWQGKKVRFLRPAEDDEDNEHDTGFFNLFTLHQNRDLGRGSKNCVQESMIPEWMDLVVWGHEHECLIEFSESVVGTFRITQPGSSVATSLVAGEAVRKKVGVVDVQGKNFRMHTVPLTQVRSFVTAELSLQEHRANLDPDDPKIDDKVTNILEEQVRVLVLNAREKRRE-----ILRDARAAGSNAGGRDDDPKGMISPLRYTL 411          
BLAST of EWM29884.1 vs. NCBI_GenBank
Match: gi|1072231041|gb|OEU15774.1| (DNA repair exonuclease, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 407.527 bits (1046), Expect = 1.715e-133
Identity = 198/389 (50.90%), Postives = 257/389 (66.07%), Query Frame = 0
Query:   11 DTLRVMIATDNHVGFLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPA----------------------PQGEGQEASPPAFSHVNYEDPNYAVGLPVFSIHGNHDDPTRDG-PSEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHAPRE---------------RGAAPDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFYISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVPLRQVRAFILKEVRLSALAGLDPHHPRAEEQVQAALEREVRALIHEARE 361
            +TLR++++TDNH+G+ E D +RG DSFAALEE+   AKEY  D VLL GDLFH N+P+R+TL+ TM I +R+C+G   +  Q++S  A                              SP    +VNYED NY+V LPVFSIHGNHDDP+RDG  SE  +A+DLL ++NLVNYFGK      + V P+LL+KG T +ALYGLG+MRDERLNRMW+ + + F R A ++                  A  +F++FALHQNRD GRG KNC++E MIP+WMD + WGHEHEC +  T S+ G F ISQPGSSVATSLVEGE+  K++G+LD+REG FRL  +PL QVR+F+L  VRL+    LDP  P+ + +V   LE +VR LIH+ARE
Sbjct:    2 NTLRILLSTDNHLGYAEDDNIRGNDSFAALEEVLFLAKEYRCDMVLLAGDLFHHNRPTRRTLYKTMDIFKRYCMGPGAIQVQIVSGSADDATAAVAAAGRGGGGGGGGGATNKNTNTNSPFVRGYVNYEDENYSVDLPVFSIHGNHDDPSRDGGNSELYAALDLLDVSNLVNYFGKQQDAKDIRVDPILLKKGTTQVALYGLGSMRDERLNRMWRGEHLTFSRPAEQDPNNNKNGGGGGNNGNDDPAQQWFNIFALHQNRDRGRGAKNCIKEDMIPDWMDFICWGHEHECDIEVTESVVGTFRISQPGSSVATSLVEGESMRKKIGILDIREGQFRLTAIPLTQVRSFVLGTVRLADERNLDPDEPKVDTKVSKLLEDKVRVLIHDARE 390          
BLAST of EWM29884.1 vs. NCBI_GenBank
Match: gi|1210514461|dbj|GAX26570.1| (double-strand break repair protein MRE11 [Fistulifera solaris])

HSP 1 Score: 409.838 bits (1052), Expect = 4.819e-132
Identity = 198/378 (52.38%), Postives = 258/378 (68.25%), Query Frame = 0
Query:    4 LLEPPDEDTLRVMIATDNHVGFLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEASPPAFSH-VNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEP-LSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLR-----------------HAPRERGAAPDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFYISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVPLRQVRAFILKEVRLSA-LAGLDPHHPRAEEQVQAALEREVRALIHEARE 361
            +LE P+EDTLR+M++TDNH+G+ ERD VRG+DSFAA EE+   AK+Y  D VLL GDLFHEN+PSR TL  TM I+R++C+G  PV  Q++SDP            A +H VNY+DPNY+V LP+FSIHGNHDDP RDG     L+++DLL   NL+NY GK    + +E+AP++L+KG T + LY LG+MRDERL+RM++ +K++FLR                     E      FF++F LHQNRD GRG KNCVQE+MIPEW+DLVVWGHEHEC+V    S+ G F I+QPGSSVATSL+ GEA  K+VGVLD++   +RL PVPL QVR F+  E+ L      LDP  PR +E V   L+ EV+ ++  A++
Sbjct:   11 VLEIPNEDTLRIMVSTDNHLGYNERDAVRGMDSFAAFEEVLYLAKKYQCDMVLLAGDLFHENRPSRATLFRTMKIVRKYCMGDNPVRIQILSDPTKNF--------ASNHVVNYQDPNYSVDLPIFSIHGNHDDPIRDGKGTTFLASLDLLAACNLINYIGKQDKIEQIEIAPVILKKGETQLCLYSLGSMRDERLHRMFKNQKVRFLRPQQDIDQQNHRQTNNPDEDDEENDDTQGFFNIFMLHQNRDLGRG-KNCVQETMIPEWIDLVVWGHEHECIVDLFESVVGTFRITQPGSSVATSLIAGEAARKKVGVLDIKGKQYRLIPVPLTQVRPFVTAEISLQEHREQLDPEDPRVDEHVATVLQEEVKVMVCSAQD 379          
BLAST of EWM29884.1 vs. NCBI_GenBank
Match: gi|1210517878|dbj|GAX23279.1| (double-strand break repair protein MRE11 [Fistulifera solaris])

HSP 1 Score: 409.838 bits (1052), Expect = 6.007e-132
Identity = 200/378 (52.91%), Postives = 259/378 (68.52%), Query Frame = 0
Query:    4 LLEPPDEDTLRVMIATDNHVGFLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEASPPAFSH-VNYEDPNYAVGLPVFSIHGNHDDPTRDGP-SEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLR-----------------HAPRERGAAPDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFYISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVPLRQVRAFILKEVRLSA-LAGLDPHHPRAEEQVQAALEREVRALIHEARE 361
            +LE P+EDTLR+MI+TDNH+G+ ERD VRG+DSFAA EE+   AK+Y  D VLL GDLFHEN+PSR TL  TM I+R++C+G  PV  Q++SDP            A +H VNY+DPNY+V LP+FSIHGNHDDP RDG  +  L+++DLL   NL+NY GK    + +E+AP++L+KG T + LY LG+MRDERL+RM++ +K++FLR                     E      FF++F LHQNRD GRG KNCVQE+MIPEW+DLVVWGHEHEC+V    S+ G F I+QPGSSVATSLV GEA  K+VGVLD++   +RL PVPL QVR F+  E+ L      LDP  PR +E V   L+ EV+ ++  A++
Sbjct:   11 VLEFPNEDTLRIMISTDNHLGYNERDAVRGMDSFAAFEEVLYLAKKYQCDMVLLAGDLFHENRPSRATLFRTMQIVRKYCMGDNPVRIQILSDPTKNF--------ASNHVVNYQDPNYSVDLPIFSIHGNHDDPIRDGKGTTFLASLDLLAACNLINYIGKQDKIEQIEIAPVILKKGETQLCLYSLGSMRDERLHRMFKNQKVRFLRPQQDIDQQNHRQTNNSDEDDEENDDTQGFFNIFMLHQNRDLGRG-KNCVQETMIPEWIDLVVWGHEHECIVDLFESVVGTFRITQPGSSVATSLVAGEAARKKVGVLDIKGKQYRLTPVPLTQVRPFVTAEISLQEHREQLDPEDPRVDEHVATVLQEEVKVMVCSAQD 379          
BLAST of EWM29884.1 vs. NCBI_GenBank
Match: gi|301103183|ref|XP_002900678.1| (double-strand break repair protein, putative [Phytophthora infestans T30-4] >gi|262101941|gb|EEY59993.1| double-strand break repair protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 380.948 bits (977), Expect = 1.748e-120
Identity = 201/364 (55.22%), Postives = 256/364 (70.33%), Query Frame = 0
Query:    1 MDQLLEPPDE-DTLRVMIATDNHVGFLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEASPPAFSHVNYEDPNYAVGLPVFSIHGNHDDPTRDG---PSEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHAPRERGAAPDFFSLFALHQNRD-TGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFYISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVPLRQVRAFILKEVRLSALAGLDPHHPRAEEQVQAALEREVRALIHEA 359
            M Q+ + P E DTLRV+++TDNH+G+ E+DPVRG DSF +  EI   A+   VD +LLGGDLFHENKPSR+TL+ TM +LR HC+G   V+FQV+SD       Q  + P F  VN+EDPNY V LP+FSIHGNHDDP R+G    ++ L+A+DL+   NLVNYFGK+   DAVEV P+LL KG T +A+YGLGNMRDERLNRM+ + K+ F R A      A ++FS+F +HQNRD  GRG KNCV ES+IP+++DLVVWGHEHEC +    SL G F+I+QPGSSVATSLVEGEA PKQV V ++   +FR+    L  VR F + EV LS +  L+P+ P   E++   LE  V  L+HEA
Sbjct:    1 MSQVDDDPQEGDTLRVLLSTDNHLGYAEKDPVRGNDSFRSFREILQLAQRQKVDLLLLGGDLFHENKPSRRTLYETMRLLRTHCMGDGAVNFQVVSD-------QSVNFPNFGVVNFEDPNYNVELPIFSIHGNHDDPAREGGGDATQSLAALDLMSAANLVNYFGKSEKVDAVEVFPVLLTKGNTRVAIYGLGNMRDERLNRMFAQGKVAFRRPAEH----AEEWFSIFVVHQNRDDKGRGNKNCVPESVIPDFIDLVVWGHEHECQIDVQESLKGNFFITQPGSSVATSLVEGEAKPKQVAVAEINGQSFRMTNYDLHTVRPFKMGEVILSEIEELEPNDPDVTERIGEYLEGRVIELLHEA 353          
BLAST of EWM29884.1 vs. NCBI_GenBank
Match: gi|970658880|gb|KUF96593.1| (Double-strand break repair protein MRE11 [Phytophthora nicotianae])

HSP 1 Score: 379.022 bits (972), Expect = 5.960e-120
Identity = 197/353 (55.81%), Postives = 249/353 (70.54%), Query Frame = 0
Query:   11 DTLRVMIATDNHVGFLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEASPPAFSHVNYEDPNYAVGLPVFSIHGNHDDPTRDG---PSEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHAPRERGAAPDFFSLFALHQNRD-TGRGQKNCVQESMIPEWMDLVVWGHEHECLVRPTRSLAGGFYISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVPLRQVRAFILKEVRLSALAGLDPHHPRAEEQVQAALEREVRALIHEA 359
            DTLRV+++TDNH+G+ E+DPVRG DSF +  EI   A+   VD +LLGGDLFHENKPSR+TL+ TM +LR HC+G   V+FQV+SD       Q  + P F  VN+EDPNY V LP+FSIHGNHDDP R+G    ++ L+A+DL+   NL+NYFGK+   DAVEV P+LL KG T +A+YGLGNMRDERLNRM+ + K+ F R A +    A D+FS+F +HQNRD  GRG KNCV ES+IP+++DLVVWGHEHEC +    SL G F+I+QPGSSVATSLVEGEA PKQV V ++    FR+    L  VR F + EV LS +  L+P  P   E++   LE  V  L+HEA
Sbjct:   15 DTLRVLLSTDNHLGYAEKDPVRGNDSFRSFREILQLAQREKVDLLLLGGDLFHENKPSRRTLYETMRVLRTHCMGDGAVNFQVVSD-------QSVNFPNFGVVNFEDPNYNVELPIFSIHGNHDDPAREGGGDATQSLAALDLMSAANLINYFGKSEKVDAVEVFPVLLTKGNTRVAIYGLGNMRDERLNRMFAQGKVAFRRPAEQ----AEDWFSIFVVHQNRDDKGRGNKNCVPESVIPDFIDLVVWGHEHECQINVQESLKGDFFITQPGSSVATSLVEGEAKPKQVAVAEINGQRFRMTNFDLHTVRLFKMGEVILSEIEELEPTDPDVAERIGEYLEGRVVELLHEA 356          
The following BLAST results are available for this feature:
BLAST of EWM29884.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112466|gb|EWM29884.1|0.000e+0100.00meiotic recombination 11 [Nannochloropsis gaditana... [more]
gi|298707467|emb|CBJ30090.1|1.436e-14057.56meiotic recombination 11 [Ectocarpus siliculosus][more]
gi|224002274|ref|XP_002290809.1|8.385e-14057.67predicted protein, partial [Thalassiosira pseudona... [more]
gi|219122146|ref|XP_002181413.1|2.166e-13958.43predicted protein, partial [Phaeodactylum tricornu... [more]
gi|219122144|ref|XP_002181412.1|4.711e-13854.50Mre11 DNA repair/recombination protein [Phaeodacty... [more]
gi|1072231041|gb|OEU15774.1|1.715e-13350.90DNA repair exonuclease, partial [Fragilariopsis cy... [more]
gi|1210514461|dbj|GAX26570.1|4.819e-13252.38double-strand break repair protein MRE11 [Fistulif... [more]
gi|1210517878|dbj|GAX23279.1|6.007e-13252.91double-strand break repair protein MRE11 [Fistulif... [more]
gi|301103183|ref|XP_002900678.1|1.748e-12055.22double-strand break repair protein, putative [Phyt... [more]
gi|970658880|gb|KUF96593.1|5.960e-12055.81Double-strand break repair protein MRE11 [Phytopht... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna809rna809Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications