rna8089, rna8089 (mRNA) Nannochloropsis gaditana

Overview
Namerna8089
Unique Namerna8089
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1029
Alignment locationKK037247.1:537275..537923 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100126g15.3024.mrna
Orig protein idgnl|cribi|Naga_100126g15.3024
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:537275..537923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100126g15gene7833Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8089rna8089-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22598.1cds8067Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8089 ID=rna8089|Name=rna8089|organism=Nannochloropsis gaditana|type=mRNA|length=1029bp
ATGTCTTCCGAAACATCCCTACACGGCTTACACTTCTTCTCTTATGCGAA
TCTAGGGCAGGCCTGGCATAATTCTTGGACTTGTTGGGGTGTTCCAATTC
GCCCCCGTGTCGGATCAACCGTGGCGCAGACGACAGCCCCCCTCGGGCAG
GTGTTGAGAAGGGCCACGCTCGTCCTTGCTGCTGCCGCTTGTGCCAGTCT
GCTCGTGCTTACACATGGGGATGTTCAAGAGGTGGGAAAGCTACCGCTCA
TCACACTTTTGGGTTTAGCAGGCGCTTCCTTTACGGAGGAACCGGCTTCC
GTAGGAGCAAGCCGAGCAGACTCCTTGAGTGCGGTCGTCGGAAGGACGTC
TGTCGGCGTGCAGATTCCTCCATCCTCCACACAGACGCAGGCCAAAAGCC
TGGGCAGGGGAAGTCGCCAAGTCACAGAGGGGGAAGACGGGGGGGAAGGG
GAGTGGGTGGAGCACCGCTCTGCAGACGGTCGGGTCACCACGGCTTTCCG
ACGAGAGCCTGGGAAGTCCGGCACCATCAGGCTCAGAGGACAGGCGTCGG
TCGACCACCACATCGCCGAGGTGCTGACCGTCTTCCTCAATACCAGCCTC
AGTACGGAGTGGGTGTCCTACCTGGACCACGCGGAGGAGCTCCCCACGGG
GCAGGAAAACGCTCACATCATCTATCAGTTTTTTGACATGCCCCTGCCCC
TGAGCGACAGGGAGTTCCTGATGCGCCGGACCGTGGCGAGCGACCGGCGG
AAAGGTACCGTGTGGGCTCACTACGCCTCGGTGGAGCACGCGTCCAAGCC
GCGGCGGCGGAGTGTTGTGCGAGGGGAAACATGTAAGACATTGTGGACCT
TCCTGGCCAAGGGCAAGGACCAGACTGTCATTCAAGTCGAGAGCTCTCTC
AACCCCAAGCTCCCTGTCAACGGGTGGCTGGTGCAGATGATGCAGAACAC
CTACCAACGCGCGTCCCTGCTTGCCATGCTTGACTTGATCAAGCGAGCCA
AGCCTCACCCATCCTTTGCCCATTGGTGA
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protein sequence of rna8089

>rna8089-protein ID=rna8089-protein|Name=rna8089|organism=Nannochloropsis gaditana|type=polypeptide|length=157bp
MSRDALCSQVDAEFLHEATRMPVCLRRSMDALERIWETRKVPVCLGKDLY
QALCSLLCQAWRTSVSMKRSKRLPGRFITPLLTFVLPEVGGGGCTYKDTG
KGKVVFAVSAVVRARIDLEEHGGSMRVGKGETCDGGKQIEGFKLDGDSRT
MGVTSLT
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mRNA from alignment at KK037247.1:537275..537923+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8089 ID=rna8089|Name=rna8089|organism=Nannochloropsis gaditana|type=mRNA|length=649bp|location=Sequence derived from alignment at KK037247.1:537275..537923+ (Nannochloropsis gaditana)
ATGTCCCGAGACGCGCTATGCTCTCAGGTCGATGCTGAATTTTTACACGA
GGCCACGCGCATGCCCGTGTGTctgaggaggagcatggatGCGTTGGAAA
GAATCTGGGAGACCAGAAAGGGTGTGTGAGGAGACGACGGAAGAGAGCAA
TGCCAGGAGGGTCACGAGGCCTCAGTGGACGCCTCGAGTCGTAAGTCCCG
GTGTGCCTAGGCAAGGACCTCTACCAGGCTCTTTGTTCACTTCTGTGCCA
GGCGTGGCGCACATCTGTCTCGATGAAACGGTCGAAGCGTCTTCCCGGAC
GCTTCATTACCCCACTCTTGACATTTGTGTTGCCTgaagtggggggggga
ggatgtaCATACAAGGATACGGGAAAGGGTAAGGTAGTTTTTGCTGTTTC
TGCGGTTGTCAGGGCGCGGATTGACCTGGAAGAGCACGTGGCGAGGTGAG
GGCCGGGatgacgagaaggaagggaagggaaagtagATATAAATGTTGAC
TGGACTTGAGGACGTGGATGATTTTCTAACATCGTAAGGGTGGTTCCATG
AGAgtaggaaaaggagaaacatGTGATGGCGGGAAGCAGATAGAAGGCTT
TAAACTGGATGGAGACAGTCGGACGATGGGTGTTACCAGCCTGACATGA
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Coding sequence (CDS) from alignment at KK037247.1:537275..537923+

>rna8089 ID=rna8089|Name=rna8089|organism=Nannochloropsis gaditana|type=CDS|length=1422bp|location=Sequence derived from alignment at KK037247.1:537275..537923+ (Nannochloropsis gaditana)
ATGTCCCGAGACGCGCTATGCTCTCAGGTCGATGCTGAATTTTTACACGA
GGCCACGCGCATGCCCGTGTGTctgaggaggagcatggatGCGTTGGAAA
GAATCTGGGAGACCAGAAAGGTCCCGGTGTGCCTAGGCAAGGACCTCTAC
CAGGCTCTTTGTTCACTTCTGTGCCAGGCGTGGCGCACATCTGTCTCGAT
GAAACGGTCGAAGCGTCTTCCCGGACGCTTCATTACCCCACTCTTGACAT
TTGTGTTGCCTgaagtgggggggggaggatgtaCATACAAGGATACGGGA
AAGGGTAAGGTAGTTTTTGCTGTTTCTGCGGTTGTCAGGGCGCGGATTGA
CCTGGAAGAGCACGGTGGTTCCATGAGAgtaggaaaaggagaaacatGTG
ATGGCGGGAAGCAGATAGAAGGCTTTAAACTGGATGGAGACAGTCGGACG
ATGGGTGTTACCAGCCTGACATGAATGTCCCGAGACGCGCTATGCTCTCA
GGTCGATGCTGAATTTTTACACGAGGCCACGCGCATGCCCGTGTGTctga
ggaggagcatggatGCGTTGGAAAGAATCTGGGAGACCAGAAAGGTCCCG
GTGTGCCTAGGCAAGGACCTCTACCAGGCTCTTTGTTCACTTCTGTGCCA
GGCGTGGCGCACATCTGTCTCGATGAAACGGTCGAAGCGTCTTCCCGGAC
GCTTCATTACCCCACTCTTGACATTTGTGTTGCCTgaagtggggggggga
ggatgtaCATACAAGGATACGGGAAAGGGTAAGGTAGTTTTTGCTGTTTC
TGCGGTTGTCAGGGCGCGGATTGACCTGGAAGAGCACGGTGGTTCCATGA
GAgtaggaaaaggagaaacatGTGATGGCGGGAAGCAGATAGAAGGCTTT
AAACTGGATGGAGACAGTCGGACGATGGGTGTTACCAGCCTGACATGAAT
GTCCCGAGACGCGCTATGCTCTCAGGTCGATGCTGAATTTTTACACGAGG
CCACGCGCATGCCCGTGTGTctgaggaggagcatggatGCGTTGGAAAGA
ATCTGGGAGACCAGAAAGGTCCCGGTGTGCCTAGGCAAGGACCTCTACCA
GGCTCTTTGTTCACTTCTGTGCCAGGCGTGGCGCACATCTGTCTCGATGA
AACGGTCGAAGCGTCTTCCCGGACGCTTCATTACCCCACTCTTGACATTT
GTGTTGCCTgaagtgggggggggaggatgtaCATACAAGGATACGGGAAA
GGGTAAGGTAGTTTTTGCTGTTTCTGCGGTTGTCAGGGCGCGGATTGACC
TGGAAGAGCACGGTGGTTCCATGAGAgtaggaaaaggagaaacatGTGAT
GGCGGGAAGCAGATAGAAGGCTTTAAACTGGATGGAGACAGTCGGACGAT
GGGTGTTACCAGCCTGACATGA
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Synonyms
Publications