rna8088, rna8088 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8088
Unique Name	rna8088
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1587
Alignment location	KK037247.1:535589..537224 +

Link to JBrowse

Properties


Property Name	Value
Product	Lipid-binding START
Orig transcript id	gnl\|cribi\|Naga_100126g16.3033.mrna
Orig protein id	gnl\|cribi\|Naga_100126g16.3033
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:535589..537224 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100126g16	gene7832	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8088	rna8088-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22607.1	cds8066	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:535589..537224+
coding sequence from alignment at KK037247.1:535589..537224+

mRNA sequence

>rna8088 ID=rna8088|Name=rna8088|organism=Nannochloropsis gaditana|type=mRNA|length=1587bp
GAACGACGCGATTTGCAGTGATAAAGAACGAGGACAGAGGGTGCAGGTAT
CAAGTCAGGAGCTTGCTCCTCTGGCCGGCTACACTTGATCCGACACGGGG
GCGAATTGGAACACCCCAACAAGTCCAAGAATTATGCCAGGCCTGCCCTA
GATTCGCATAAGAGAAGAAGTGTAAGCCGTGTAGGGATGTTTCGGAAGAC
ATTGAGCGGCGCGCCACGTCCGAGTAGAAAGACATGTGCCGGCAGGAAAG
ATCGACAAGGCAGAGGCATCTCACTACGACCCCAAGTCAAATGCCATATT
AAAGCCTGCCCTGGCTCGCTGGTCTTCCTCAACCCCGTCACCCAAAAAAC
ATCTTCCGCAATAAATATGATCCGCTTTGAGTACGTGTGGTTTGGGATAC
TGGGGAGCATCCTCATTCATTTATTCAGCCAGGACGCAGGGTAACCATCT
CGAGTAGTGCTGCCTTCAACAGGTAGATCGTGACAGCCTGCTATGACAGA
AACCTCGCTTTTTTTTCCTTCCACGCGATAGAATTCACACGATTTCATAA
GAATATTCACGCCTGATACAGGAAGAATGGTGCAGCAGCGCTTTGAGGGC
AAGGTTGTGCTTGTTACAGGCGGAGGGGCCGGTATTGGGACAGGTATTTG
TAAGCGATTTCACGCCGAGGGCGCCAAAGTATGGATTGTTGACACGAATC
GAGAGGGAGCCGAGGCTGCGGCGGCGGCGCTCAATCAAGTGGACAATGGC
AAGGAGCACGCACGCCGGGCTGTCACAGCCATTGTCGACATCTCTCAAGA
AACTGCTGTAAGTGCATTGCTGGATCAAATCGAAGTCACCGATGGGAGAT
TGGACGTACTGGTGAACAATGCAGCGCGATTCGTCTTGAAGAGCGCTGAA
ATGGCGGAGGAGAGGGACTGGGACAACGTCCTGGCCAGCAATGTTAAGGG
CTACGGACTCGTCTCGAAACATGCCATTCGCGTCATGAAAGCCACCAAGA
CGCGAGGAAGCTCGACCGAGGCGTCGGGATGCTCCATCATCAACCTCGGT
TCCATTTCCTCCTTTGTCGGACAACCGGGCATGTGCACCTACAGTGCCAC
AAAAGCTGCCGTCCTCGCTCTCACGCGCTGCACTGCCATTGATTGCGGGC
CCTACGGGATTCGAGTGAACGCCGTCTGCCCCGGCCCCATTCTCACAGAG
GCGACAAAGCGGCATGCCGCAAGCCAAGGCAAAAGCATGGAGGAAATGGT
CTCCGAATTGACGGGTCACATGATACAGCATCGAATGGGTACTCCTGCGG
AAATAGCGGCTGTTGTTGCCTTCATGGCCAGCGAGGATGCTAGTTTTGTT
TCGGGCGCCTCCCTCTTAGTGGACGGGGGGTACTCGGCTCTGTAATCTGC
CACAGGAGTCCCCGGAGGAAGGGAAAATATGGACTGAAAACCCACGAGGC
CAGACGACAGGCTGTAGCTATATGAGAAAAGAACATTGATATTGAATTGA
TTTCATACATTGTTTTCGGAAGTGTGGTTGGTCTACATTTCCGAATGACG
CCAAATGGGCCGCGAATAACCTCCTCACATGTTCCCC

protein sequence of rna8088

>rna8088-protein ID=rna8088-protein|Name=rna8088|organism=Nannochloropsis gaditana|type=polypeptide|length=342bp
MSSETSLHGLHFFSYANLGQAWHNSWTCWGVPIRPRVGSTVAQTTAPLGQ
VLRRATLVLAAAACASLLVLTHGDVQEVGKLPLITLLGLAGASFTEEPAS
VGASRADSLSAVVGRTSVGVQIPPSSTQTQAKSLGRGSRQVTEGEDGGEG
EWVEHRSADGRVTTAFRREPGKSGTIRLRGQASVDHHIAEVLTVFLNTSL
STEWVSYLDHAEELPTGQENAHIIYQFFDMPLPLSDREFLMRRTVASDRR
KGTVWAHYASVEHASKPRRRSVVRGETCKTLWTFLAKGKDQTVIQVESSL
NPKLPVNGWLVQMMQNTYQRASLLAMLDLIKRAKPHPSFAHW

mRNA from alignment at KK037247.1:535589..537224+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8088 ID=rna8088|Name=rna8088|organism=Nannochloropsis gaditana|type=mRNA|length=1636bp|location=Sequence derived from alignment at KK037247.1:535589..537224+ (Nannochloropsis gaditana)
ATGTCTTCCGAAACATCCCTACACGGCTTACACTTCTTCTCTTATGCGAA
TCTAGGGCAGGCCTGGCATAATTCTTGGACTTGTTGGGGTGTTCCAATTC
GCCCCCGTGTCGGATCAAGTGTAGCCGGCCAGAGGAGCAAGCTCCTGACT
TGATACCTGCACCCTCTGTCCTCGTTCTTTATCACTGCAAATCGCGTCGT
TCCACGGCGGACTAATCAGCCGTGGCGCAGACGACAGCCCCCCTCGGGCA
GGTGTTGAGAAGGTACGTGTCCCAGGTTATTGTCGCTGTTGATGGATCgg
gggtcggaggaagagcaggacacCAGTCCTCCTAATAAAATGATGTCCGT
TGGGCAATCCTCCGCCTAAAAAATGCAAACCCCATGTAGTGTGACACTGA
TAGAGTTTCATTGGAGGGATTTGTCGCCGCCTTCCCTTTGATACCTGTCG
ATTTCAGGCAGGTATCCTCACCAGACttgttccccctcccccctccgttt
CTTTCTCCGATTTTTTAGGGCCACGCTCgtccttgctgctgccgcttgTG
CCAGTCTGCTCGTGCTTACACATGGGGATGTTCAAGAGGTGGGAAAGCTA
CCGCTCATCACACTTTTGGGTTTAGCAGGCGCTTCCTTTACGGAGGAACC
GGCTTCCGTAGGAGCAAGCCGAGCAGACTCCTTGAGTGCGGTCGTCGGAA
GGACGTCTGTCGGCGTGCAgattcctccatcctccacacAGACGCAGGCC
AAAAGCCTGGGCAGGGGAAGTCGCCAAGTcacagagggggaagacggggg
ggaaggggagtgggTGGAGCACCGCTCTGCAGACGGTCGGGTCACCACGG
CTTTCCGACGAGAGCCTGGGAAGTCCGGCACCATCAGGCTCAGAGgacag
gtagggagggcgggctggaCTATaggcaaagagggcgggacgcGGGTCTG
GACCTCGCTGACGCGGGCCTTTTGCCTCGTACCCTCTCCTCGGTCGCAGG
CGTCGGTCGACCACCACATCGCCGAGGTGCTGACCGTCTTCCTCAATACC
AGCCTCAGTACGGAGTGGGTGTCCTACCTGGACCACGCGGAGGAGCTCCC
CACGGGGCAGGAAAACGCTCACATCATCTATCAGTTTTTTGACatgcccc
tgcccctgaGCGACAGGGAGTTCCTGATGCGCCGGACCGTGGCGAGCGAC
CGGCGGAAAGGTACCGTGTGGGCTCACTACGCCTCGGTGGAGCACGCGTC
CAagccgcggcggcggagtGTTGTGCGAGGGGTAGGTTTGcatggggaga
gggagcggagctTGAGGGGGCCgatgggacgaggagggaggaagggggag
agtggtgacggggtggggaggatcgGGGGGAAATCCATCGTCAATGCTGC
CCTCTCACACGTACAATATGGCCCATTCGTAGGAAACATGTAAGACATTG
TGGACCTTCCTGGCCAAGGGCAAGGACCAGACTGTCATTCAAGTCGAGAG
CTCTCTCAACCCCAAGCTCCCTGTCAACGGGTGGCTGGTGCAGATGATGC
AGAACACCTACCAACGCGCGTCCCTGCTTGCCATGCTTGACTTGATCAAG
CGAGCCAAGCCTCACCCATCCTTTGCCCATTGGTGA

Coding sequence (CDS) from alignment at KK037247.1:535589..537224+

>rna8088 ID=rna8088|Name=rna8088|organism=Nannochloropsis gaditana|type=CDS|length=5145bp|location=Sequence derived from alignment at KK037247.1:535589..537224+ (Nannochloropsis gaditana)
ATGTCTTCCGAAACATCCCTACACGGCTTACACTTCTTCTCTTATGCGAA
TCTAGGGCAGGCCTGGCATAATTCTTGGACTTGTTGGGGTGTTCCAATTC
GCCCCCGTGTCGGATCAACCGTGGCGCAGACGACAGCCCCCCTCGGGCAG
GTGTTGAGAAGGGCCACGCTCgtccttgctgctgccgcttgTGCCAGTCT
GCTCGTGCTTACACATGGGGATGTTCAAGAGGTGGGAAAGCTACCGCTCA
TCACACTTTTGGGTTTAGCAGGCGCTTCCTTTACGGAGGAACCGGCTTCC
GTAGGAGCAAGCCGAGCAGACTCCTTGAGTGCGGTCGTCGGAAGGACGTC
TGTCGGCGTGCAgattcctccatcctccacacAGACGCAGGCCAAAAGCC
TGGGCAGGGGAAGTCGCCAAGTcacagagggggaagacgggggggaaggg
gagtgggTGGAGCACCGCTCTGCAGACGGTCGGGTCACCACGGCTTTCCG
ACGAGAGCCTGGGAAGTCCGGCACCATCAGGCTCAGAGgacagGCGTCGG
TCGACCACCACATCGCCGAGGTGCTGACCGTCTTCCTCAATACCAGCCTC
AGTACGGAGTGGGTGTCCTACCTGGACCACGCGGAGGAGCTCCCCACGGG
GCAGGAAAACGCTCACATCATCTATCAGTTTTTTGACatgcccctgcccc
tgaGCGACAGGGAGTTCCTGATGCGCCGGACCGTGGCGAGCGACCGGCGG
AAAGGTACCGTGTGGGCTCACTACGCCTCGGTGGAGCACGCGTCCAagcc
gcggcggcggagtGTTGTGCGAGGGGAAACATGTAAGACATTGTGGACCT
TCCTGGCCAAGGGCAAGGACCAGACTGTCATTCAAGTCGAGAGCTCTCTC
AACCCCAAGCTCCCTGTCAACGGGTGGCTGGTGCAGATGATGCAGAACAC
CTACCAACGCGCGTCCCTGCTTGCCATGCTTGACTTGATCAAGCGAGCCA
AGCCTCACCCATCCTTTGCCCATTGGTGAATGTCTTCCGAAACATCCCTA
CACGGCTTACACTTCTTCTCTTATGCGAATCTAGGGCAGGCCTGGCATAA
TTCTTGGACTTGTTGGGGTGTTCCAATTCGCCCCCGTGTCGGATCAACCG
TGGCGCAGACGACAGCCCCCCTCGGGCAGGTGTTGAGAAGGGCCACGCTC
gtccttgctgctgccgcttgTGCCAGTCTGCTCGTGCTTACACATGGGGA
TGTTCAAGAGGTGGGAAAGCTACCGCTCATCACACTTTTGGGTTTAGCAG
GCGCTTCCTTTACGGAGGAACCGGCTTCCGTAGGAGCAAGCCGAGCAGAC
TCCTTGAGTGCGGTCGTCGGAAGGACGTCTGTCGGCGTGCAgattcctcc
atcctccacacAGACGCAGGCCAAAAGCCTGGGCAGGGGAAGTCGCCAAG
TcacagagggggaagacgggggggaaggggagtgggTGGAGCACCGCTCT
GCAGACGGTCGGGTCACCACGGCTTTCCGACGAGAGCCTGGGAAGTCCGG
CACCATCAGGCTCAGAGgacagGCGTCGGTCGACCACCACATCGCCGAGG
TGCTGACCGTCTTCCTCAATACCAGCCTCAGTACGGAGTGGGTGTCCTAC
CTGGACCACGCGGAGGAGCTCCCCACGGGGCAGGAAAACGCTCACATCAT
CTATCAGTTTTTTGACatgcccctgcccctgaGCGACAGGGAGTTCCTGA
TGCGCCGGACCGTGGCGAGCGACCGGCGGAAAGGTACCGTGTGGGCTCAC
TACGCCTCGGTGGAGCACGCGTCCAagccgcggcggcggagtGTTGTGCG
AGGGGAAACATGTAAGACATTGTGGACCTTCCTGGCCAAGGGCAAGGACC
AGACTGTCATTCAAGTCGAGAGCTCTCTCAACCCCAAGCTCCCTGTCAAC
GGGTGGCTGGTGCAGATGATGCAGAACACCTACCAACGCGCGTCCCTGCT
TGCCATGCTTGACTTGATCAAGCGAGCCAAGCCTCACCCATCCTTTGCCC
ATTGGTGAATGTCTTCCGAAACATCCCTACACGGCTTACACTTCTTCTCT
TATGCGAATCTAGGGCAGGCCTGGCATAATTCTTGGACTTGTTGGGGTGT
TCCAATTCGCCCCCGTGTCGGATCAACCGTGGCGCAGACGACAGCCCCCC
TCGGGCAGGTGTTGAGAAGGGCCACGCTCgtccttgctgctgccgcttgT
GCCAGTCTGCTCGTGCTTACACATGGGGATGTTCAAGAGGTGGGAAAGCT
ACCGCTCATCACACTTTTGGGTTTAGCAGGCGCTTCCTTTACGGAGGAAC
CGGCTTCCGTAGGAGCAAGCCGAGCAGACTCCTTGAGTGCGGTCGTCGGA
AGGACGTCTGTCGGCGTGCAgattcctccatcctccacacAGACGCAGGC
CAAAAGCCTGGGCAGGGGAAGTCGCCAAGTcacagagggggaagacgggg
gggaaggggagtgggTGGAGCACCGCTCTGCAGACGGTCGGGTCACCACG
GCTTTCCGACGAGAGCCTGGGAAGTCCGGCACCATCAGGCTCAGAGgaca
gGCGTCGGTCGACCACCACATCGCCGAGGTGCTGACCGTCTTCCTCAATA
CCAGCCTCAGTACGGAGTGGGTGTCCTACCTGGACCACGCGGAGGAGCTC
CCCACGGGGCAGGAAAACGCTCACATCATCTATCAGTTTTTTGACatgcc
cctgcccctgaGCGACAGGGAGTTCCTGATGCGCCGGACCGTGGCGAGCG
ACCGGCGGAAAGGTACCGTGTGGGCTCACTACGCCTCGGTGGAGCACGCG
TCCAagccgcggcggcggagtGTTGTGCGAGGGGAAACATGTAAGACATT
GTGGACCTTCCTGGCCAAGGGCAAGGACCAGACTGTCATTCAAGTCGAGA
GCTCTCTCAACCCCAAGCTCCCTGTCAACGGGTGGCTGGTGCAGATGATG
CAGAACACCTACCAACGCGCGTCCCTGCTTGCCATGCTTGACTTGATCAA
GCGAGCCAAGCCTCACCCATCCTTTGCCCATTGGTGAATGTCTTCCGAAA
CATCCCTACACGGCTTACACTTCTTCTCTTATGCGAATCTAGGGCAGGCC
TGGCATAATTCTTGGACTTGTTGGGGTGTTCCAATTCGCCCCCGTGTCGG
ATCAACCGTGGCGCAGACGACAGCCCCCCTCGGGCAGGTGTTGAGAAGGG
CCACGCTCgtccttgctgctgccgcttgTGCCAGTCTGCTCGTGCTTACA
CATGGGGATGTTCAAGAGGTGGGAAAGCTACCGCTCATCACACTTTTGGG
TTTAGCAGGCGCTTCCTTTACGGAGGAACCGGCTTCCGTAGGAGCAAGCC
GAGCAGACTCCTTGAGTGCGGTCGTCGGAAGGACGTCTGTCGGCGTGCAg
attcctccatcctccacacAGACGCAGGCCAAAAGCCTGGGCAGGGGAAG
TCGCCAAGTcacagagggggaagacgggggggaaggggagtgggTGGAGC
ACCGCTCTGCAGACGGTCGGGTCACCACGGCTTTCCGACGAGAGCCTGGG
AAGTCCGGCACCATCAGGCTCAGAGgacagGCGTCGGTCGACCACCACAT
CGCCGAGGTGCTGACCGTCTTCCTCAATACCAGCCTCAGTACGGAGTGGG
TGTCCTACCTGGACCACGCGGAGGAGCTCCCCACGGGGCAGGAAAACGCT
CACATCATCTATCAGTTTTTTGACatgcccctgcccctgaGCGACAGGGA
GTTCCTGATGCGCCGGACCGTGGCGAGCGACCGGCGGAAAGGTACCGTGT
GGGCTCACTACGCCTCGGTGGAGCACGCGTCCAagccgcggcggcggagt
GTTGTGCGAGGGGAAACATGTAAGACATTGTGGACCTTCCTGGCCAAGGG
CAAGGACCAGACTGTCATTCAAGTCGAGAGCTCTCTCAACCCCAAGCTCC
CTGTCAACGGGTGGCTGGTGCAGATGATGCAGAACACCTACCAACGCGCG
TCCCTGCTTGCCATGCTTGACTTGATCAAGCGAGCCAAGCCTCACCCATC
CTTTGCCCATTGGTGAATGTCTTCCGAAACATCCCTACACGGCTTACACT
TCTTCTCTTATGCGAATCTAGGGCAGGCCTGGCATAATTCTTGGACTTGT
TGGGGTGTTCCAATTCGCCCCCGTGTCGGATCAACCGTGGCGCAGACGAC
AGCCCCCCTCGGGCAGGTGTTGAGAAGGGCCACGCTCgtccttgctgctg
ccgcttgTGCCAGTCTGCTCGTGCTTACACATGGGGATGTTCAAGAGGTG
GGAAAGCTACCGCTCATCACACTTTTGGGTTTAGCAGGCGCTTCCTTTAC
GGAGGAACCGGCTTCCGTAGGAGCAAGCCGAGCAGACTCCTTGAGTGCGG
TCGTCGGAAGGACGTCTGTCGGCGTGCAgattcctccatcctccacacAG
ACGCAGGCCAAAAGCCTGGGCAGGGGAAGTCGCCAAGTcacagaggggga
agacgggggggaaggggagtgggTGGAGCACCGCTCTGCAGACGGTCGGG
TCACCACGGCTTTCCGACGAGAGCCTGGGAAGTCCGGCACCATCAGGCTC
AGAGgacagGCGTCGGTCGACCACCACATCGCCGAGGTGCTGACCGTCTT
CCTCAATACCAGCCTCAGTACGGAGTGGGTGTCCTACCTGGACCACGCGG
AGGAGCTCCCCACGGGGCAGGAAAACGCTCACATCATCTATCAGTTTTTT
GACatgcccctgcccctgaGCGACAGGGAGTTCCTGATGCGCCGGACCGT
GGCGAGCGACCGGCGGAAAGGTACCGTGTGGGCTCACTACGCCTCGGTGG
AGCACGCGTCCAagccgcggcggcggagtGTTGTGCGAGGGGAAACATGT
AAGACATTGTGGACCTTCCTGGCCAAGGGCAAGGACCAGACTGTCATTCA
AGTCGAGAGCTCTCTCAACCCCAAGCTCCCTGTCAACGGGTGGCTGGTGC
AGATGATGCAGAACACCTACCAACGCGCGTCCCTGCTTGCCATGCTTGAC
TTGATCAAGCGAGCCAAGCCTCACCCATCCTTTGCCCATTGGTGA

Synonyms

Publications