EWM22607.1, cds8066 (CDS) Nannochloropsis gaditana

Overview
NameEWM22607.1
Unique Namecds8066
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:535589..535706 +
Alignment locationKK037247.1:535808..535850 +
Alignment locationKK037247.1:536107..536488 +
Alignment locationKK037247.1:536588..536869 +
Alignment locationKK037247.1:537021..537224 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22607.1
ProductLipid-binding START
Orig transcript idgnl|cribi|Naga_100126g16.3033.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:535589..535706 +
KK037247.1supercontigKK037247.1:535808..535850 +
KK037247.1supercontigKK037247.1:536107..536488 +
KK037247.1supercontigKK037247.1:536588..536869 +
KK037247.1supercontigKK037247.1:537021..537224 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
Vocabulary: INTERPRO
TermDefinition
IPR023393START-like_dom
IPR002913START_lipid-bd_dom
Homology
BLAST of EWM22607.1 vs. NCBI_GenBank
Match: gi|585103170|gb|EWM22607.1| (Lipid-binding START [Nannochloropsis gaditana])

HSP 1 Score: 701.819 bits (1810), Expect = 0.000e+0
Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 0
Query:    1 MSSETSLHGLHFFSYANLGQAWHNSWTCWGVPIRPRVGSTVAQTTAPLGQVLRRATLVLAAAACASLLVLTHGDVQEVGKLPLITLLGLAGASFTEEPASVGASRADSLSAVVGRTSVGVQIPPSSTQTQAKSLGRGSRQVTEGEDGGEGEWVEHRSADGRVTTAFRREPGKSGTIRLRGQASVDHHIAEVLTVFLNTSLSTEWVSYLDHAEELPTGQENAHIIYQFFDMPLPLSDREFLMRRTVASDRRKGTVWAHYASVEHASKPRRRSVVRGETCKTLWTFLAKGKDQTVIQVESSLNPKLPVNGWLVQMMQNTYQRASLLAMLDLIKRAKPHPSFAHW 342
            MSSETSLHGLHFFSYANLGQAWHNSWTCWGVPIRPRVGSTVAQTTAPLGQVLRRATLVLAAAACASLLVLTHGDVQEVGKLPLITLLGLAGASFTEEPASVGASRADSLSAVVGRTSVGVQIPPSSTQTQAKSLGRGSRQVTEGEDGGEGEWVEHRSADGRVTTAFRREPGKSGTIRLRGQASVDHHIAEVLTVFLNTSLSTEWVSYLDHAEELPTGQENAHIIYQFFDMPLPLSDREFLMRRTVASDRRKGTVWAHYASVEHASKPRRRSVVRGETCKTLWTFLAKGKDQTVIQVESSLNPKLPVNGWLVQMMQNTYQRASLLAMLDLIKRAKPHPSFAHW
Sbjct:    1 MSSETSLHGLHFFSYANLGQAWHNSWTCWGVPIRPRVGSTVAQTTAPLGQVLRRATLVLAAAACASLLVLTHGDVQEVGKLPLITLLGLAGASFTEEPASVGASRADSLSAVVGRTSVGVQIPPSSTQTQAKSLGRGSRQVTEGEDGGEGEWVEHRSADGRVTTAFRREPGKSGTIRLRGQASVDHHIAEVLTVFLNTSLSTEWVSYLDHAEELPTGQENAHIIYQFFDMPLPLSDREFLMRRTVASDRRKGTVWAHYASVEHASKPRRRSVVRGETCKTLWTFLAKGKDQTVIQVESSLNPKLPVNGWLVQMMQNTYQRASLLAMLDLIKRAKPHPSFAHW 342          
BLAST of EWM22607.1 vs. NCBI_GenBank
Match: gi|298712309|emb|CBJ33104.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 117.087 bits (292), Expect = 3.928e-27
Identity = 71/232 (30.60%), Postives = 118/232 (50.86%), Query Frame = 0
Query:  118 VGVQIPPSSTQTQAKSLGRGSRQVTEGEDGGEGEWVEHRSADGRVTTAFRREPGKSGTIRLRGQASVDHHIAEVLTVFLNTSLSTEWVSYLDHAEELPT-------GQENAHIIYQFFDMPLPLSDREFLMRRTVASDRRKGTVWAHYASVEHASKPRRRSVVRGETCKTLWTFLAKGKDQTVIQVESSLNPKLPVNGWLVQMMQNTYQRASLLAMLDLIKRAKPHPSFAHW 342
            +GV + P   +  A+ L   S +  +GE+    E VE     G   T   R  G S ++ LRG+ +VD HI  + T FLNT+ + +WV +L   EELPT       G  +  +++Q +DMP P+ DRE ++RR+V  D+R   + A Y S +H ++P   + VR    +T W   + G  +T I+ E+  +PK  +   +V  +Q  + R ++   +   +  + HP+   W
Sbjct:   35 LGVLLSPEIMKYLAR-LRSSSVEPGDGEESIAWELVED---SGGFRTFSSRVQGSS-SLALRGETTVDEHIGRLYTAFLNTTSTLDWVRFLVEVEELPTQASSRRGGSGDGDVLFQKYDMPWPVKDREVVIRRSVRLDKRAKKMIASYQSTDHPARPITSATVRAIVYRTSWILTSLGSSKTSIEFETRTDPKGSLPSAMVGFLQVKFPRETVAGFVSSARNVELHPAMTKW 261          
BLAST of EWM22607.1 vs. NCBI_GenBank
Match: gi|1082621979|gb|OFZ51367.1| (hypothetical protein A2417_08580 [Bdellovibrionales bacterium RIFOXYC1_FULL_37_79] >gi|1082632214|gb|OFZ59824.1| hypothetical protein A2381_17790 [Bdellovibrionales bacterium RIFOXYB1_FULL_37_110] >gi|1082638237|gb|OFZ65438.1| hypothetical protein A2577_18325 [Bdellovibrionales bacterium RIFOXYD1_FULL_36_51])

HSP 1 Score: 73.1738 bits (178), Expect = 2.225e-11
Identity = 59/190 (31.05%), Postives = 86/190 (45.26%), Query Frame = 0
Query:  151 EWVEHRSADGRVTTAFRREPGKSGTIRLRGQASVDHHIAEVLTVFLNTSLSTEWVSYLDHAEELPTGQENAHIIYQFFDMPLPLSDREFLMRRTVASDRRKGTVWAHYASVEHASKPRRRSVVRGETCKTLWTFLAKGKDQTVIQVESSL--NPKLPVNGWLVQMMQNTYQRASL------LAMLDLIKR 332
            EW ++   D       +R   +SG I ++    +D+ I +VLTV  + S  TEWV  LD ++ +        I Y  FD P P  DR+FL+      D  K  V A   SV H   P R+  VRG T     T+L    + T   VE S   + +  +  W+V M+Q T+ R  +      LA  D++ R
Sbjct:   30 EWTKYSDEDSIQVYEAKR-AHRSGLIPIKVHTILDYPITKVLTVLTDASRKTEWVPRLDISKTVEQVAFGEFIDYASFDAPWPFEDRDFLVYIRTNYDIEKKEVKAIIYSVTHPQMPNRKGFVRGHTYSGN-TYLKSVFNDTKTYVEISFFNDYRGNIPKWIVNMVQLTWPRTFIGQLRGQLAKKDVVDR 217          
BLAST of EWM22607.1 vs. NCBI_GenBank
Match: gi|1199229851|gb|OUR96712.1| (hypothetical protein A9Q84_10240 [Halobacteriovorax marinus])

HSP 1 Score: 68.5514 bits (166), Expect = 5.781e-10
Identity = 46/181 (25.41%), Postives = 84/181 (46.41%), Query Frame = 0
Query:  152 WVEHRSADGRVTTAFRREPGKSGTIRLRGQASVDHHIAEVLTVFLNTSLSTEWVSYLDHAEELPTGQENAHIIYQFFDMPLPLSDREFLMRRTVASDRRKGTVWAHYASVEHASKPRRRSVVRGETCKTLWTFLAKGKDQTVIQVESSLNPKLPVNGWLVQMMQNTYQRASLLAMLDLIKR 332
            W E    +G   T +  E   +  +  +G+  ++    ++L V  +     +WV  LD  +EL    +   +IYQ F MPL +S+R+ + R  ++ ++  G    H  SVEHA  P     VR E   + +       ++T + VE   +PK  +  WLV ++Q ++   +L  +   +K+
Sbjct:   23 WDEINQEEG--ITVYSAEVPDNPLVAFKGKVIIEAPAKKILWVLADRKHRRDWVDRLDINDELEIISKVERVIYQSFKMPLFISNRDMVYRSVLSRNKETGVYKFHLFSVEHAKAPETIG-VRAELVNSSYLVKPLSANKTEVTVEILSDPKGLLPAWLVNLIQKSWPLKTLRGLRTQVKK 200          
BLAST of EWM22607.1 vs. NCBI_GenBank
Match: gi|1182763729|emb|SMF29914.1| (START domain-containing protein [Pseudobacteriovorax antillogorgiicola])

HSP 1 Score: 68.5514 bits (166), Expect = 9.395e-10
Identity = 45/186 (24.19%), Postives = 84/186 (45.16%), Query Frame = 0
Query:  150 GEWVEHRSADGRVTTAFRREPGKSGTIRLRGQASVDHHIAEVLTVFLNTSLSTEWVSYLDHAEELPTGQENAHIIYQFFDMPLPLSDREFLMRRTVASDRRKGTVWAHYASVEHASKPRRRSV-VRGETCKTLW-TFLAKGKDQTVIQVESSLNPKLPVNGWLVQMMQNTYQRASLLAMLDLIKRA 333
             +W + +  DG   + +R+    S    + G A +D   ++++ V ++     +WV     A  + T      I Y  F MP P+SDR+F+          +  +     SVEH S P   SV VRGE     +  + +K   QT ++VE   +PK  +  W+V ++Q  +   ++  +   ++++
Sbjct:   26 NQWEQVKVEDG--ISVYRKSFEDSNVKGVAGAALIDAPASKIVWVLMDHEHKDDWVDKFRDARTIETPSRLTSIQYAAFSMPFPVSDRDFVYAYEFQYHSNRNMIEVDVKSVEHKSAPEDDSVGVRGEIIMGKYRLYPSKNGKQTYVEVEYLADPKGLLPSWIVNIVQKNWPYKTIKGLRKQVQKS 209          
BLAST of EWM22607.1 vs. NCBI_GenBank
Match: gi|676387227|ref|XP_009036892.1| (hypothetical protein AURANDRAFT_64116 [Aureococcus anophagefferens] >gi|323452279|gb|EGB08153.1| hypothetical protein AURANDRAFT_64116 [Aureococcus anophagefferens])

HSP 1 Score: 67.781 bits (164), Expect = 1.832e-9
Identity = 46/167 (27.54%), Postives = 78/167 (46.71%), Query Frame = 0
Query:  178 LRGQASVDHHIAEVLTVFLNTSLSTEWVSYLDHAEELPTGQENAHIIYQFFDMPLPLSDREFLMRRTVASDRRKGTVWAHYASVEHASKPRRRSVVRGETCKTLWTFLAKGKDQTVIQVESSLNPKLPVNGWLVQMMQNTYQRASLLAMLDLIKR--AKPHPSFAHW 342
            + G+A V   +AE++TVFL+     +W   L   E+     + A  IYQ F  P P+ DRE +++ T      +  +   Y SV+  + P  R  VR +  K  W F A  + +T+I   S ++P   + GW   ++   +  + +LA+++  K     P   F  W
Sbjct:   45 VHGEAVVGLSMAELMTVFLDLEQYDKWDDTL--VEKRQWRADGADFIYQRFQQPWPVRDRELVLKMTTYPYPDENRLAVRYESVDDGT-PVARGAVRTKAQKVWWNFTAVSETETLISHYSCVDPGGAIPGWARDLVVQKWCASQILALVETAKELGLAPVEEFLGW 208          
BLAST of EWM22607.1 vs. NCBI_GenBank
Match: gi|551546358|ref|XP_005761108.1| (hypothetical protein EMIHUDRAFT_446330 [Emiliania huxleyi CCMP1516] >gi|485609759|gb|EOD08679.1| hypothetical protein EMIHUDRAFT_446330 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 68.1662 bits (165), Expect = 1.920e-9
Identity = 48/169 (28.40%), Postives = 84/169 (49.70%), Query Frame = 0
Query:  176 IRLRGQASVDHHIAEVLTVFLNTSLSTEWVSYLDHAEELPTGQENAHIIYQFFDMPLPLSDREFLMRRTVASDRRKGTVWAHYASVEHASKPRRR-SVVRGETCKTLWTFLA-KGKDQTVIQVESSLNPKLPVNGWLVQMMQNTYQRASLLAMLDLIKRAKPHPSFAHW 342
            + +   A+VD  IA +L+VF   +L+ +W   L     L  G  N  + +Q + MP PL+DR+F++      D R  + ++  +S  H + P +   VVR E  ++ W+F A  G + T +   S+++PK  +   LV   Q   +   + A+++  +   P P F HW
Sbjct:    2 LEVSASATVDLSIAALLSVFAEPALNLKWNERLSEQTLLHAG--NRTVAHQLYPMPWPLTDRDFVLTCDERVDERLRSFFSSCSSTSHPAFPSQEPGVVRAELVRSSWSFTAVPGSESTHVTFSSAVDPKGALPRPLVAAAQRLGRDQLISALVEEARGRTPSPRFEHW 168          
BLAST of EWM22607.1 vs. NCBI_GenBank
Match: gi|551556466|ref|XP_005765352.1| (hypothetical protein EMIHUDRAFT_437251 [Emiliania huxleyi CCMP1516] >gi|485615300|gb|EOD12923.1| hypothetical protein EMIHUDRAFT_437251 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 67.781 bits (164), Expect = 2.774e-9
Identity = 48/169 (28.40%), Postives = 84/169 (49.70%), Query Frame = 0
Query:  176 IRLRGQASVDHHIAEVLTVFLNTSLSTEWVSYLDHAEELPTGQENAHIIYQFFDMPLPLSDREFLMRRTVASDRRKGTVWAHYASVEHASKPRRR-SVVRGETCKTLWTFLA-KGKDQTVIQVESSLNPKLPVNGWLVQMMQNTYQRASLLAMLDLIKRAKPHPSFAHW 342
            + +   A+VD  IA +L+VF   +L+ +W   L     L  G  N  + +Q + MP PL+DR+F++      D R  + ++  +S  H + P +   VVR E  ++ W+F A  G + T +   S+++PK  +   LV   Q   +   + A+++  +   P P F HW
Sbjct:    2 LEVSASATVDLSIAALLSVFAEPALNLKWNERLSEQTLLHAG--NRTVAHQLYPMPWPLTDRDFVLTCDERVDERSRSFFSSCSSTSHPAFPSQEPGVVRAELVRSSWSFTAVPGSESTHVTFSSAVDPKGAIPRPLVAAAQRLGRDQLISALVEEARGRTPSPRFEHW 168          
BLAST of EWM22607.1 vs. NCBI_GenBank
Match: gi|740338008|ref|WP_038174709.1| (hypothetical protein [Vibrio pacinii])

HSP 1 Score: 61.2326 bits (147), Expect = 2.511e-7
Identity = 42/189 (22.22%), Postives = 79/189 (41.80%), Query Frame = 0
Query:  147 GGEGEWVEHRSADGRVTTAFRREPGKSGTIRLRGQASVDHHIAEVLTVFLNTSLSTEWVSYLDHAEELPTGQENAHIIYQFFDMPLPLSDREFLMRRTVASDRRKGTVWAHYASV-EHASKPRRRSVVRGETCKTLWTFLAKGKDQTVIQVESSLNPKLPVNGWLVQMMQNTYQRASLLAMLDLIKRAK 334
              + +W  H + D      + R    S     R +A ++  +  ++ +FL+TS+ TEWV  +D  EE+        I   +   P P++DRE ++   ++ D +  TV      + ++   P    VVR    K+ W       + T +  +    P   +  WLV ++  +    +LL M  ++   K
Sbjct:   21 SDQTDW--HLARDKLGIEVYNRSIEGSDFKEFRSEADINASLTSIIALFLDTSVGTEWVENIDQMEEIEHFDPTHSITKTYSKAPWPVADREAIVENHISQDDKTLTVTIEQQGLPDYLPHPSDHKVVRIPYLKSRWVLTPIDSETTHLSYQVLTEPGGTLPAWLVNLVSVSQPYNTLLGMQKMLHADK 207          
BLAST of EWM22607.1 vs. NCBI_GenBank
Match: gi|1084994703|gb|OGS05771.1| (hypothetical protein A3G41_02975 [Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9])

HSP 1 Score: 60.4622 bits (145), Expect = 6.146e-7
Identity = 41/177 (23.16%), Postives = 76/177 (42.94%), Query Frame = 0
Query:  166 FRREPGKSGTIRLRGQASVDHHIAEVLTVFLNTSLSTEWVSYLDHAEELPTGQENAHIIYQFFDMPLPLSDREFLMRRTVASDRRKGTVWAHYASVEHASKPRRRSVVRGETCKTLWTFLAKGKDQ-TVIQVESSLNPKLPVNGWLVQMMQNTYQRASLLAMLDLIKRAKPHPSFAH 341
            ++R+  +S  +  R +A +D  +  VL V  +T   +EWV      + L    E   + YQ  D P P   R+++ R     D  K +V   + +  H+S P R   VR    + LW   A G  + T  ++   ++P   +  WL   +   +   +L  +  +++  +P+  F  
Sbjct:   59 YKRKVPESRFVEFRARAILDAPVLSVLAVLDDTGGYSEWVPGNLEMKILEKVSETDEVFYQATDAPWPAKSRDYVGRFQFQKDDGKRSVEIEFRNTSHSSAPVRGDRVRMPFVRGLWVLQAAGDGRSTRAELGVHMDPGGWIPAWLANWVTRYFPLDTLKNLQRVLREKEPNADFVR 235          
The following BLAST results are available for this feature:
BLAST of EWM22607.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103170|gb|EWM22607.1|0.000e+0100.00Lipid-binding START [Nannochloropsis gaditana][more]
gi|298712309|emb|CBJ33104.1|3.928e-2730.60conserved unknown protein [Ectocarpus siliculosus][more]
gi|1082621979|gb|OFZ51367.1|2.225e-1131.05hypothetical protein A2417_08580 [Bdellovibrionale... [more]
gi|1199229851|gb|OUR96712.1|5.781e-1025.41hypothetical protein A9Q84_10240 [Halobacteriovora... [more]
gi|1182763729|emb|SMF29914.1|9.395e-1024.19START domain-containing protein [Pseudobacteriovor... [more]
gi|676387227|ref|XP_009036892.1|1.832e-927.54hypothetical protein AURANDRAFT_64116 [Aureococcus... [more]
gi|551546358|ref|XP_005761108.1|1.920e-928.40hypothetical protein EMIHUDRAFT_446330 [Emiliania ... [more]
gi|551556466|ref|XP_005765352.1|2.774e-928.40hypothetical protein EMIHUDRAFT_437251 [Emiliania ... [more]
gi|740338008|ref|WP_038174709.1|2.511e-722.22hypothetical protein [Vibrio pacinii][more]
gi|1084994703|gb|OGS05771.1|6.146e-723.16hypothetical protein A3G41_02975 [Elusimicrobia ba... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8088rna8088Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications