rna8084, rna8084 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8084
Unique Name	rna8084
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	992
Alignment location	KK037247.1:525365..527784 -

Link to JBrowse

Properties


Property Name	Value
Product	Amino acid transporter, transmembrane
Orig transcript id	gnl\|cribi\|Naga_100126g24.3038.mrna
Orig protein id	gnl\|cribi\|Naga_100126g24.3038
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:525365..527784 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100126g24	gene7828	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8084	rna8084-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22612.1	cds8062	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:525365..527784-
coding sequence from alignment at KK037247.1:525365..527784-

mRNA sequence

>rna8084 ID=rna8084|Name=rna8084|organism=Nannochloropsis gaditana|type=mRNA|length=992bp
ACGGCTCAGAGCGAAGAAAAGAAGCGAGGCACTAAGAAGGTACTTGATAG
CCGTTCCCTTACCCGTTTCCACCGACTCCTGGTTTCCATCATTAGCTGAT
CGTACGCATACGTCGAAGGGAGTGTGGGTATCTGGATGGAGGGTGGAGGG
GATTATGTGATCAAAATCCCTGCCTGCAGGGCTGCCGTCCTAATCCTCCT
CCAAGCACCATCAATTTCTCTCTCTCCCTACTCGAGCGAGATGCAGCTGT
GGACTTGCTGCCTGGTAAATTATTGACATCCATACTCATATGTATACTCA
TTGGCTCTCCTACAGGTCGTGCCTTATCGTTGCCAGTACTTGGAAGGGTC
AGACTCGACGAAGCAGATATGGGAATCATCAAACCCGGCAAAGTCGTGGT
GGTGTTGGCAGGCCGGTACGCGGGCAAGAAGGCCGTGGTCGTAAAGGCCT
TGGACGAGGGCTCGGTGGACAAGCGTTTCCCTCACGCTATTGTCTGCGGC
ATCGATGTGGCGCCCCGCAAGGTCACCCGCAGCATGAATAAGAAGACCAT
CAAGCGGAAGTCGAAGGTAAAGCCTTTCGTGAAGGCGATCAACTACACGC
ACATCCTTCCCACGCGCTACGTGGTAGACATCGACTTGAAGAAGGCAGAG
GAGCCGACGGACGACAGGAAAGCGCTGAAGCGCGCGATCCGAAAGACGCT
GGAGGAGCGCTACCTAGACCAGGCATCGATTGCGGCCAAGTCCGAGCGCA
AGTCACAGGGTACGGCTTACTTCTACAAGAAGCTGCGGTTTTAAGCAGGG
GTTGCAGCCTTAGCGGTGGCTTCGAGAGGGAGGGTGATGTGTATGGGCTG
GACGTGCGCAACAGCTGCGGAAGAAGCCAGGTGTCTTTCGGGGTAGGCCG
CGGGTGTAACGCTCTGTACAACCACAGCGCCGGTGGGATGGAGTGGATCA
AACCGGATAAAGAAAAGGAAAGAGGATGATTGCACTCATTGT

protein sequence of rna8084

>rna8084-protein ID=rna8084-protein|Name=rna8084|organism=Nannochloropsis gaditana|type=polypeptide|length=514bp
MKATAAATAMLLLPQAALSHSSPLYTSFSGPRAHFPATFLATVPSHTLSN
TKRPPILNQRRRVAVIRGGAAVTAEGSFQVPPAGTESGDGNKGSSVSTAT
FNLIKNILGAGVLSLPSGVGAFSSNPMALVPAVALTMGMGSLSAYCFTLI
ARVCALNKVETYGEAWEKSVGKKTAWMVPAACTFKTFCACTAFSIIIADS
FSSLFGATPGFPALLAQRTNVIVWMTSLVLLPLCMLKSFAPLAPFSLLGI
LGTVFTGAVIALRLLDGSYAPGGQFHEAIAASLRPSLLSGSSSPLLSPMV
FVLVSMLSTSFIAHYNAPKFYTELENRSIPKLNKVVQNSFNFCTAAFAFI
MGCGYLTFGGASQGLILNNYAEQDVLAKMCRLAIGASIVFGYPLTFVGIR
DGVLSLLGRKAPSTRTQTVTTLVLLAVVSTLAVFLRDVGFVVSLGGALLG
SCIIYIFPAIIFIKTMAQKVATGEVVETPAVKREVLLNKGITALGVLLAI
IGATVSVLKAFILK

mRNA from alignment at KK037247.1:525365..527784-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8084 ID=rna8084|Name=rna8084|organism=Nannochloropsis gaditana|type=mRNA|length=2420bp|location=Sequence derived from alignment at KK037247.1:525365..527784- (Nannochloropsis gaditana)
ACGAAATCACACTTCCATCACACACACAGCACAGACAACCTTTAGACTGC
CACCATGAAGGCCACAGCAGCAGCCACGGCGATGTTGCTGTTGCCGCAGG
CGGCCCTTAGCCACTCTTCTCCACTGTACACATCATTTTCTGGTCCCCGT
GCCCACTTTCCGGCCACTTTCCTGGCCACAGTACCGTCCCACACCCTCAG
CAACACCAAGCGCCCTCCTATCCTCAACCAACGCCGACGCGTCGCTGTGA
TTCGAGGCGGAGCGGCCGTCACCGCTGAGGGTAGTTTTCAAGTTCCACCA
GCAGGCACAGAGAGCGGGGATGGAAACAAGGGCTCCTCCGTCTCGACAGC
CACCTTCAATCTCAGTAAGTTTTGCCGGCGAAGAGAGGGGAGGCGGCGCG
ATGGACTCAATTTGGGTCCGCCTTTACCATGTACTTGCTCTCCTCACACC
GTTCGCCTCCTGGTCCGACCGCCACGTGATTGAGGACGCTTGAATGAATG
AAAGAAAGCCATCTTTTCAAGCCTCGGAGGATGCCAGACCGCTCAATTTC
CGGTCCTTCTCTCCCACTCCCTTCCTTTTCCCCCTTCTCCAGTCAAAAAC
ATCCTTGGTGCCGGCGTCCTCTCCCTCCCTTCCGGCGTGGGAGCTTTTTC
CAGCAACCCTATGGCGTTGGTCCCCGCCGTCGCCCTCACCATGGGGATGG
GCTCGCTCTCCGCTTACTGCTTCACGCTGATCGCACGGGTCTGTGCTCTT
AACAAAGTGGAAACATACGGGGAGGCCTGGGAGAAGTCCGTGGGGAAGAA
AACCGCTTGGATGGTCCCCGCCGCCTGCACCTTCAAGACTTTCTGCGCCT
GCACGGCCTTCAGCATCATCATCGCCGACTCCTTCTCCTCGCTCTTCGGG
GCCACGCCGGGCTTTCCCGCCTTGTTGGCGCAGCGGACGAACGTGATCGT
TTGGATGACCTCCCTGGTTCTCCTTCCCCTCTGCATGCTCAAGAGCTTCG
CGCCCCTCGCCCCCTTCTCCCTGCTCGGCATCCTCGGCACTGTCTTCACG
GGCGCCGTGATCGCACTGAGGCTGCTGGACGGATCCTACGCGCCGGGGGG
CCAGTTCCATGAGGCCATTGCCGCTTCCCTTCGCCCCTCTCTGCTCTCAG
GGTCGTCCTCCCCTCTCTTGAGCCCGATGGTCTTCGTCCTCGTCTCCATG
CTCTCCACCTCCTTTATCGCGCACTACAACGCCCCGAAGTTTTACACGGA
GCTGGAGAATCGCTCCATTCCCAAGCTCAACAAAGTGGTGCAGAACTCCT
TCAACTTTTGTACCGCCGCTTTTGCCTTCATCATGGGATGCGGCTACCTG
ACCTTCGGAGGGGCGAGCCAGGGGCTGATACTTAACAATTACGCCGAGCA
GGACGTGCTGGCGAAGATGTGCCGGTTGGCGATTGGGGCGAGCATCGTCT
TCGGCTACCCTTTGACCTTCGTGGGCATCCGCGACGGGGTCTTGAGTCTC
CTGGGACGCAAGGCGCCCAGCACCAGGACTCAGACAGTGACCACGCTGGT
CCTTCTGGCTGTCGTCAGCACGCTCGCGGTCTTTTTGCGGGACGTGGGCT
TCGTGGTATCCCTGGGGGGGGCCTTGTTGGGCTCCTGCATCATCTACATC
TTTCCTGCCATCATCTTCATCAAGACGATGGCGCAAAAGGTGGCAACAGG
GGAGGTTGTTGAGACGCCGGCTGTAAAGAGGGAGGTGCTGCTGAACAAGG
GCATTACGGCTCTGGGCGTGCTCTTGGCGATTATCGGGGCCACTGTATCG
GTCTTGAAGGCCTTTATTCTCAAGTAAGTGGTTTCAGCCTGAGGATTGGC
GTGTACGAGTGACGGCAGAATTTGTGCAAAGGGGGAAAAGAACACGACCG
CGTCGATGATTGAAAAGACGCATGCGCTGTGGAAACGAGACGGTTGGATG
CGTACAACGGAGGGAGGGTGTGGCAGAACGGAATGGTAATTCATGTTTGG
TGATATAAAATAAATAGACGGAGTGAGCACACAGAGCCGAAGGTTGAAGG
AGGGAAAAGCATGGCACTTTATTTTCTCTCCCGTGAGGCATCTTAGAACA
GCTGGGGAGTACCTCGAAAGGCGGAAACATTTTGAGTGGGAATGAAAAAG
GGTATTAAAAGGTAGTACCGAGTGATAAACGTACATCTAGAGGAGGGCTA
GGCGCAAACATCATGATAAAGGACGTCAAAACGGGTTGGAAAAGGAACTG
AATGTTTGCAGATAAAAATAAATCACTTGAAGAAGATGGTTCGTCAAAGG
CAGGATGGAAAACTTCAAAGTGACGATACACCGCATCTTTTAAAATCTTA
TGCGTTTTTTCGTAGGCTCATTCTACTATCGTGCCTCAACCTGTTATGTC
TTTCAAGGGAATATCAAGCT

Coding sequence (CDS) from alignment at KK037247.1:525365..527784-

>rna8084 ID=rna8084|Name=rna8084|organism=Nannochloropsis gaditana|type=CDS|length=3090bp|location=Sequence derived from alignment at KK037247.1:525365..527784- (Nannochloropsis gaditana)
TCAAAAACATCCTTGGTGCCGGCGTCCTCTCCCTCCCTTCCGGCGTGGGA
GCTTTTTCCAGCAACCCTATGGCGTTGGTCCCCGCCGTCGCCCTCACCAT
GGGGATGGGCTCGCTCTCCGCTTACTGCTTCACGCTGATCGCACGGGTCT
GTGCTCTTAACAAAGTGGAAACATACGGGGAGGCCTGGGAGAAGTCCGTG
GGGAAGAAAACCGCTTGGATGGTCCCCGCCGCCTGCACCTTCAAGACTTT
CTGCGCCTGCACGGCCTTCAGCATCATCATCGCCGACTCCTTCTCCTCGC
TCTTCGGGGCCACGCCGGGCTTTCCCGCCTTGTTGGCGCAGCGGACGAAC
GTGATCGTTTGGATGACCTCCCTGGTTCTCCTTCCCCTCTGCATGCTCAA
GAGCTTCGCGCCCCTCGCCCCCTTCTCCCTGCTCGGCATCCTCGGCACTG
TCTTCACGGGCGCCGTGATCGCACTGAGGCTGCTGGACGGATCCTACGCG
CCGGGGGGCCAGTTCCATGAGGCCATTGCCGCTTCCCTTCGCCCCTCTCT
GCTCTCAGGGTCGTCCTCCCCTCTCTTGAGCCCGATGGTCTTCGTCCTCG
TCTCCATGCTCTCCACCTCCTTTATCGCGCACTACAACGCCCCGAAGTTT
TACACGGAGCTGGAGAATCGCTCCATTCCCAAGCTCAACAAAGTGGTGCA
GAACTCCTTCAACTTTTGTACCGCCGCTTTTGCCTTCATCATGGGATGCG
GCTACCTGACCTTCGGAGGGGCGAGCCAGGGGCTGATACTTAACAATTAC
GCCGAGCAGGACGTGCTGGCGAAGATGTGCCGGTTGGCGATTGGGGCGAG
CATCGTCTTCGGCTACCCTTTGACCTTCGTGGGCATCCGCGACGGGGTCT
TGAGTCTCCTGGGACGCAAGGCGCCCAGCACCAGGACTCAGACAGTGACC
ACGCTGGTCCTTCTGGCTGTCGTCAGCACGCTCGCGGTCTTTTTGCGGGA
CGTGGGCTTCGTGGTATCCCTGGGGGGGGCCTTGTTGGGCTCCTGCATCA
TCTACATCTTTCCTGCCATCATCTTCATCAAGACGATGGCGCAAAAGGTG
GCAACAGGGGAGGTTGTTGAGACGCCGGCTGTAAAGAGGGAGGTGCTGCT
GAACAAGGGCATTACGGCTCTGGGCGTGCTCTTGGCGATTATCGGGGCCA
CTGTATCGGTCTTGAAGGCCTTTATTCTCAAGTAAATGAAGGCCACAGCA
GCAGCCACGGCGATGTTGCTGTTGCCGCAGGCGGCCCTTAGCCACTCTTC
TCCACTGTACACATCATTTTCTGGTCCCCGTGCCCACTTTCCGGCCACTT
TCCTGGCCACAGTACCGTCCCACACCCTCAGCAACACCAAGCGCCCTCCT
ATCCTCAACCAACGCCGACGCGTCGCTGTGATTCGAGGCGGAGCGGCCGT
CACCGCTGAGGGTAGTTTTCAAGTTCCACCAGCAGGCACAGAGAGCGGGG
ATGGAAACAAGGGCTCCTCCGTCTCGACAGCCACCTTCAATCTCATCAAA
AACATCCTTGGTGCCGGCGTCCTCTCCCTCCCTTCCGGCGTGGGAGCTTT
TTCCAGCAACCCTATGGCGTTGGTCCCCGCCGTCGCCCTCACCATGGGGA
TGGGCTCGCTCTCCGCTTACTGCTTCACGCTGATCGCACGGGTCTGTGCT
CTTAACAAAGTGGAAACATACGGGGAGGCCTGGGAGAAGTCCGTGGGGAA
GAAAACCGCTTGGATGGTCCCCGCCGCCTGCACCTTCAAGACTTTCTGCG
CCTGCACGGCCTTCAGCATCATCATCGCCGACTCCTTCTCCTCGCTCTTC
GGGGCCACGCCGGGCTTTCCCGCCTTGTTGGCGCAGCGGACGAACGTGAT
CGTTTGGATGACCTCCCTGGTTCTCCTTCCCCTCTGCATGCTCAAGAGCT
TCGCGCCCCTCGCCCCCTTCTCCCTGCTCGGCATCCTCGGCACTGTCTTC
ACGGGCGCCGTGATCGCACTGAGGCTGCTGGACGGATCCTACGCGCCGGG
GGGCCAGTTCCATGAGGCCATTGCCGCTTCCCTTCGCCCCTCTCTGCTCT
CAGGGTCGTCCTCCCCTCTCTTGAGCCCGATGGTCTTCGTCCTCGTCTCC
ATGCTCTCCACCTCCTTTATCGCGCACTACAACGCCCCGAAGTTTTACAC
GGAGCTGGAGAATCGCTCCATTCCCAAGCTCAACAAAGTGGTGCAGAACT
CCTTCAACTTTTGTACCGCCGCTTTTGCCTTCATCATGGGATGCGGCTAC
CTGACCTTCGGAGGGGCGAGCCAGGGGCTGATACTTAACAATTACGCCGA
GCAGGACGTGCTGGCGAAGATGTGCCGGTTGGCGATTGGGGCGAGCATCG
TCTTCGGCTACCCTTTGACCTTCGTGGGCATCCGCGACGGGGTCTTGAGT
CTCCTGGGACGCAAGGCGCCCAGCACCAGGACTCAGACAGTGACCACGCT
GGTCCTTCTGGCTGTCGTCAGCACGCTCGCGGTCTTTTTGCGGGACGTGG
GCTTCGTGGTATCCCTGGGGGGGGCCTTGTTGGGCTCCTGCATCATCTAC
ATCTTTCCTGCCATCATCTTCATCAAGACGATGGCGCAAAAGGTGGCAAC
AGGGGAGGTTGTTGAGACGCCGGCTGTAAAGAGGGAGGTGCTGCTGAACA
AGGGCATTACGGCTCTGGGCGTGCTCTTGGCGATTATCGGGGCCACTGTA
TCGGTCTTGAAGGCCTTTATTCTCAAGTAAATGAAGGCCACAGCAGCAGC
CACGGCGATGTTGCTGTTGCCGCAGGCGGCCCTTAGCCACTCTTCTCCAC
TGTACACATCATTTTCTGGTCCCCGTGCCCACTTTCCGGCCACTTTCCTG
GCCACAGTACCGTCCCACACCCTCAGCAACACCAAGCGCCCTCCTATCCT
CAACCAACGCCGACGCGTCGCTGTGATTCGAGGCGGAGCGGCCGTCACCG
CTGAGGGTAGTTTTCAAGTTCCACCAGCAGGCACAGAGAGCGGGGATGGA
AACAAGGGCTCCTCCGTCTCGACAGCCACCTTCAATCTCA

Synonyms

Publications