rna8079, rna8079 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8079
Unique Name	rna8079
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1089
Alignment location	KK037247.1:516943..517817 -

Link to JBrowse

Properties


Property Name	Value
Product	rna methylase
Orig transcript id	gnl\|cribi\|Naga_100528g4.9502.mrna
Orig protein id	gnl\|cribi\|Naga_100528g4.9502
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:516943..517817 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100528g4	gene7823	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22616.1	cds8057	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8079	rna8079-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:516943..517817-
coding sequence from alignment at KK037247.1:516943..517817-

mRNA sequence

>rna8079 ID=rna8079|Name=rna8079|organism=Nannochloropsis gaditana|type=mRNA|length=1089bp
TTTTTCGTTTGTCCTAGCTTGCCTGGGCGGCATTTTCTCTGTATAGAATC
CTTCTCTCCTTTCATTTTACGCGTGCTGGTGTCTTTTTGCGCGTCATCTT
TCGCGCTTGTTCTCCCCGTTGACCTTTCACCGACAGTTGGTAACCTCTTC
CTCGCGACTCCTCCCTCTCTATCAACGAACCTCATTTTGGGGGGGGAGCA
GGCCAAGGGATCAGTATCATATTCTTTTCGATTATAAAGATGCGAAGAGG
CTATGGAGTAAAGTCAATCAAGCGGAAAGAGCAGGTGAAAGAAGCGTTTA
CTAGCCTAGGAAAAGAGTTGCAAGAAGAAAATATAAATCACGTCACTGGG
CTTATGGCGACTTTCAAAGAGTCCTTGGAGGACTTTGCACGGAAACATAA
GAAAGATATAAACGCCAATCCTGTTCTTCGGGCCGAGTTCAACAAAATGT
GCGCGGGTATAGGTGTAGATCCACTTGCATCAAACAAGGGCTTTTGGGCC
CAGCTTCTGGGCGTTGGTGACTTCTACTACGAGCTAGCCGTACAAATCAT
CGAGATATGTTTGTTTACCCGCAGTCTGAACGGAGGCCTGATATGCCTCT
CGGATTTGACTCAACGCGTACAGAAGCGGCGAAAGGTTGACAAGATCAGC
ACGGAAGATATAAAGATCGCCATCAACAAAGTGCACCTGTTGGGGGCGGG
CTTCTCGTTGCTTCAGTCGGGCAAGACGACGCTCGTAGTCTCGGTGCCCA
CAGAGCTTTCTTCGGATCACGCTGCCATCCTCCAAATGGCGCAAGCGTCA
GATTCGCACGTGACGGTGGGGGAACTTGTCCAGAAGCTGCAATGGGTTGA
AAAGCGGGTGCGGTTGGCGTTGGACCTGATGATGCAAGCGGGCATGGCTT
GGTTGGATGCGCAGGGGGCGGACGGCTCGAGAGAGGTTTACTGGTTCCCG
TCCCTGTGGGAGGAAGGCTTGTGCCAGACTCAGAGGGACAGGGTAACAGG
GCAAGGTGGGCGAGAAGAGGGAGATAATCGATCGCCAGGTTGAAAGAATA
GGGTCAACGCCTTGTAAATAAGGATCGATATGCGCTTGT

protein sequence of rna8079

>rna8079-protein ID=rna8079-protein|Name=rna8079|organism=Nannochloropsis gaditana|type=polypeptide|length=235bp
MHDLETRPCSLAAQIEALVARHVKETEALEDSHLDSCIDEAAIQVQRHTL
SPFLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVG
VDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLSDQEAVLNRLVEAVEAK
AQEAAIECKDGVEAVVVFLYVYPTLLARLVCLLDRLVRAWRDFRRVEVVT
LTYHLEAPVGGGEGEGVLYRECGGRVEIHTLEKKT

mRNA from alignment at KK037247.1:516943..517817-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8079 ID=rna8079|Name=rna8079|organism=Nannochloropsis gaditana|type=mRNA|length=875bp|location=Sequence derived from alignment at KK037247.1:516943..517817- (Nannochloropsis gaditana)
AAGCGTCGCATATCTCTATCAGCGTCACACACAGGCCATATTCTGAGCTC
CAATATGACCAATTTTATCATTTCCAAGGGGAAAAATGCATGACTTGGAG
ACGCGCCCGTGTTCACTCGCAGCGCAAATAGAGGCTCTTGTGGCACGTCA
TGTGAAAGAAACGGAGGCCCTAGAGGACTCGCATTTGGATTCATGCATTG
ATGAAGCAGCGATACAAGTACAGCGACATACCCTCTCTCCCTTTTTACCC
ACTGCCGCCGAGGATCTGGCTTCTATTTTCAATATTTTACGGCTTGGCCC
TCGGCATATAATGGTGGACTTAGGGTGCGGCGACGGCCGACCTTTGATAG
CGGCGGCATTGTTATGCAAATGTCGTGGCGTAGGCGTGGATATAAGTCAG
CAATGTATTGCGCTGGCAAAAAGTATTGTATCCCAGGAAGGCTTGAGCGA
TAGGATGGTCGCTTTTTTCCGGTGGGACCTTTTGAGTGATCAGGAGGCGG
TCCTAAATCGGCTGGTAGAGGCTGTGGAGGCCAAGGCTCAAGAAGCGGCA
ATAGAGTGCAAGGACGGGGTTGAGGCGGTAGTGGTATTCTTGTATGTGTA
CCCAACATTGCTGGCCCGACTGGTCTGTTTGCTCGACCGCTTGGTTCGGG
CTTGGAGGGATTTCAGACGAGTGGAGGTGGTGACCCTCACCTATCATTTG
GAGGCACCGGTGGGAGGTGGCGAGGGAGAAGGGGTACTATACCGGGAGTG
TGGGGGAAGAGTAGAAATACACACGCTTGAAAAAAAGACCTGACAACGAA
GATACGTGGCCAAGTGTCAGAGGGACCTCCGCTCCCAAGCAACACAAGCG
CATATCGATCCTTATTTACAAGGCG

Coding sequence (CDS) from alignment at KK037247.1:516943..517817-

>rna8079 ID=rna8079|Name=rna8079|organism=Nannochloropsis gaditana|type=CDS|length=708bp|location=Sequence derived from alignment at KK037247.1:516943..517817- (Nannochloropsis gaditana)
ATGCATGACTTGGAGACGCGCCCGTGTTCACTCGCAGCGCAAATAGAGGC
TCTTGTGGCACGTCATGTGAAAGAAACGGAGGCCCTAGAGGACTCGCATT
TGGATTCATGCATTGATGAAGCAGCGATACAAGTACAGCGACATACCCTC
TCTCCCTTTTTACCCACTGCCGCCGAGGATCTGGCTTCTATTTTCAATAT
TTTACGGCTTGGCCCTCGGCATATAATGGTGGACTTAGGGTGCGGCGACG
GCCGACCTTTGATAGCGGCGGCATTGTTATGCAAATGTCGTGGCGTAGGC
GTGGATATAAGTCAGCAATGTATTGCGCTGGCAAAAAGTATTGTATCCCA
GGAAGGCTTGAGCGATAGGATGGTCGCTTTTTTCCGGTGGGACCTTTTGA
GTGATCAGGAGGCGGTCCTAAATCGGCTGGTAGAGGCTGTGGAGGCCAAG
GCTCAAGAAGCGGCAATAGAGTGCAAGGACGGGGTTGAGGCGGTAGTGGT
ATTCTTGTATGTGTACCCAACATTGCTGGCCCGACTGGTCTGTTTGCTCG
ACCGCTTGGTTCGGGCTTGGAGGGATTTCAGACGAGTGGAGGTGGTGACC
CTCACCTATCATTTGGAGGCACCGGTGGGAGGTGGCGAGGGAGAAGGGGT
ACTATACCGGGAGTGTGGGGGAAGAGTAGAAATACACACGCTTGAAAAAA
AGACCTGA

Synonyms

Publications