EWM22616.1, cds8057 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22616.1 vs. NCBI_GenBank
Match: gi|585103180|gb|EWM22616.1| (rna methylase [Nannochloropsis gaditana]) HSP 1 Score: 473.781 bits (1218), Expect = 6.768e-169 Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0 Query: 1 MHDLETRPCSLAAQIEALVARHVKETEALEDSHLDSCIDEAAIQVQRHTLSPFLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLSDQEAVLNRLVEAVEAKAQEAAIECKDGVEAVVVFLYVYPTLLARLVCLLDRLVRAWRDFRRVEVVTLTYHLEAPVGGGEGEGVLYRECGGRVEIHTLEKKT 235 MHDLETRPCSLAAQIEALVARHVKETEALEDSHLDSCIDEAAIQVQRHTLSPFLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLSDQEAVLNRLVEAVEAKAQEAAIECKDGVEAVVVFLYVYPTLLARLVCLLDRLVRAWRDFRRVEVVTLTYHLEAPVGGGEGEGVLYRECGGRVEIHTLEKKT Sbjct: 1 MHDLETRPCSLAAQIEALVARHVKETEALEDSHLDSCIDEAAIQVQRHTLSPFLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLSDQEAVLNRLVEAVEAKAQEAAIECKDGVEAVVVFLYVYPTLLARLVCLLDRLVRAWRDFRRVEVVTLTYHLEAPVGGGEGEGVLYRECGGRVEIHTLEKKT 235
BLAST of EWM22616.1 vs. NCBI_GenBank
Match: gi|553190538|ref|XP_005855210.1| (rna methylase, partial [Nannochloropsis gaditana CCMP526] >gi|422293850|gb|EKU21150.1| rna methylase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 457.218 bits (1175), Expect = 1.597e-162 Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0 Query: 1 MHDLETRPCSLAAQIEALVARHVKETEALEDSHLDSCIDEAAIQVQRHTLSPFLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLSDQEAVLNRLVEAVEAKAQEAAIECKDGVEAVVVFLYVYPTLLARLVCLLDRLVRAWRDFRRVEVVTLTYHLEAPVGGGEGEGVLYRECGGRVE 227 MHDLETRPCSLAAQIEALVARHVKETEALEDSHLDSCIDEAAIQVQRHTLSPFLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLSDQEAVLNRLVEAVEAKAQEAAIECKDGVEAVVVFLYVYPTLLARLVCLLDRLVRAWRDFRRVEVVTLTYHLEAPVGGGEGEGVLYRECGGRVE Sbjct: 1 MHDLETRPCSLAAQIEALVARHVKETEALEDSHLDSCIDEAAIQVQRHTLSPFLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLSDQEAVLNRLVEAVEAKAQEAAIECKDGVEAVVVFLYVYPTLLARLVCLLDRLVRAWRDFRRVEVVTLTYHLEAPVGGGEGEGVLYRECGGRVE 227
BLAST of EWM22616.1 vs. NCBI_GenBank
Match: gi|219112515|ref|XP_002178009.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410894|gb|EEC50823.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 105.916 bits (263), Expect = 4.381e-24 Identity = 61/162 (37.65%), Postives = 86/162 (53.09%), Query Frame = 0 Query: 50 LSPFLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLSDQEAVLNRLVEAVEAKAQEAAIECKDGVEAVVVFLYVYPTLLARLVCLLDRLVRAWRDFRRVEVVTLTYHLEAPVGG 211 LSP++PT A +A L +++D+GCGDGR ++AA L CR VG+D+S CIA+A+ + +E L DR+ +FF D D + +L Q +E D + V+FLY YPTLL RL LL + + VVTLTYHL + Sbjct: 85 LSPYVPTTAAKIAKFVEFASLLESDVLLDIGCGDGRICVSAARLSGCRAVGIDVSPLCIAMARELAREENLEDRL-SFFEADATIDPKRLL-----------QSPLLE-SDLKDVTVIFLYTYPTLLGRLFPLLAKFTENG----KARVVTLTYHLSQSMAN 229
BLAST of EWM22616.1 vs. NCBI_GenBank
Match: gi|1209288912|ref|WP_088335618.1| (hypothetical protein [Methanopyrus sp. KOL6]) HSP 1 Score: 72.4034 bits (176), Expect = 3.429e-12 Identity = 50/143 (34.97%), Postives = 72/143 (50.35%), Query Frame = 0 Query: 53 FLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFR----WDLLS-DQEAVLNRLVEAVEAKAQEAAIECKDGVEAVVVFLYVYPTLLARLVCLLDRLVRAW 190 F+PT E + I L L P + +VDLGCGDGR +I+AA L C GVGVD+ + + LA + G+ D+ + DLL D + V LV ++ + E + C +V + + P L A V LD L RA+ Sbjct: 36 FVPTPIETVVRILRKLELTPENRVVDLGCGDGRFVISAAYLYGCEGVGVDVREDVLELALTKSETLGVDDKTIFIHSDVRDVDLLELDPDVVFVYLVPSLLEEISEELVSCG---ATIVSYTFEVPGLGAPEVLRLDDLRRAY 175
BLAST of EWM22616.1 vs. NCBI_GenBank
Match: gi|1129188965|gb|OLP94540.1| (Neurofilament heavy polypeptide [Symbiodinium microadriaticum]) HSP 1 Score: 71.633 bits (174), Expect = 1.167e-10 Identity = 57/167 (34.13%), Postives = 79/167 (47.31%), Query Frame = 0 Query: 49 TLSPFLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLSDQEAVLNRLVEAVEAKAQEAAIECKDGVEAVVVFLYVYPTLLARLVCLLDRLVRAWRD--FRRVEVVTLTYHLEAPVGGGE 213 ++SPF+P AA + + RLGP ++ DLGCGDG LI AA C CR VG+DI CI A + + +R F R DLL + L L E ++ AA +VFL + LV L L WR+ R++ +VT L++ V E Sbjct: 2129 SVSPFVPCAAGRIPYVLQAARLGPEDVLWDLGCGDGVVLIEAARRCGCRCVGLDIDGPCITAALQRAREANVEER-CTFLRCDLLQLPQGTLGGLSAEQEFQSLPAAT-------CALVFLTAH-----GLVRLSRWLHEEWREGSSRQLRLVTCVESLDSAVDFNE 2282
BLAST of EWM22616.1 vs. NCBI_GenBank
Match: gi|1150838597|ref|WP_078031418.1| (SAM-dependent methyltransferase [Massilia sp. KIM] >gi|1150050100|gb|OON62762.1| SAM-dependent methyltransferase [Massilia sp. KIM]) HSP 1 Score: 65.0846 bits (157), Expect = 2.330e-9 Identity = 42/134 (31.34%), Postives = 64/134 (47.76%), Query Frame = 0 Query: 46 QRHTLSPFLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLSDQEAVLNRLVEAVEAKAQEAAIECKDGVEAVVVFLYVYPTLLARL 179 +R+ P++PT E + + ++ ++G ++ DLGCGDGR ++ AA RG G+D+ IA AK I + G+SDR +F DL D EA VV LY+ PT+ +L Sbjct: 38 ERNLDVPYVPTPQEVVDKMLDLAKVGKNDVLYDLGCGDGRIVVTAAKNRGARGTGIDLDPARIAEAKEIAKKAGVSDR-ASFRVGDLFK------------------------TDVSEATVVTLYLLPTVNVKL 146
BLAST of EWM22616.1 vs. NCBI_GenBank
Match: gi|497242263|ref|WP_009556488.1| (class I SAM-dependent methyltransferase [Oscillatoriales cyanobacterium JSC-12] >gi|410712072|gb|EKQ69578.1| Putative RNA methylase family UPF0020 [Oscillatoriales cyanobacterium JSC-12]) HSP 1 Score: 63.5438 bits (153), Expect = 5.730e-9 Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 0 Query: 53 FLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLSDQ 136 FLPT E + I + +L P ++ DLGCGDGR LIAAA RGVG+DI + + A Q G+ ++ F++ DL Q Sbjct: 10 FLPTPPEVVEGILQLAKLDPNDLVYDLGCGDGRILIAAAQRFGIRGVGIDIDRDRVHEATQSAHQAGVH-HLLTFYQQDLYESQ 92
BLAST of EWM22616.1 vs. NCBI_GenBank
Match: gi|1125594991|gb|OLE97624.1| (hypothetical protein AUG75_06060 [Cyanobacteria bacterium 13_1_20CM_4_61_6]) HSP 1 Score: 63.5438 bits (153), Expect = 7.605e-9 Identity = 47/134 (35.07%), Postives = 66/134 (49.25%), Query Frame = 0 Query: 52 PFLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLSDQEAVLNRLVEAVEAKAQEAAIECKDGVEAVVVFLYVYPTLLARLVCLLDR 185 P+ P+ ++++ + R GP+ ++ DLGCGDGR +IAAA RGVGV+I + +A + G+ DR V F R DL EA I EA VV L++Y TL RL+ L R Sbjct: 43 PYFPSTDAAVSAMLELARTGPKDVVYDLGCGDGRIVIAAAKDFGARGVGVEIDPAPLRMAVYRAQRAGVGDR-VRFVRGDLF-------------------EADIG-----EATVVTLFLYETLNRRLLPKLLR 151
BLAST of EWM22616.1 vs. NCBI_GenBank
Match: gi|1121295482|ref|WP_073607306.1| (class I SAM-dependent methyltransferase [Phormidium tenue] >gi|1115286953|gb|OKH50066.1| SAM-dependent methyltransferase [Phormidium tenue NIES-30]) HSP 1 Score: 62.7734 bits (151), Expect = 7.702e-9 Identity = 41/127 (32.28%), Postives = 59/127 (46.46%), Query Frame = 0 Query: 53 FLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLSDQEAVLNRLVEAVEAKAQEAAIECKDGVEAVVVFLYVYPTLLARL 179 F+PT A+ + ++ + L ++ DLGCGDGR LI AAL RGVGVD+ + A++ QEG+ DR+ Q+ + D A VVF+Y+ P L RL Sbjct: 10 FIPTPADAIVAMLKLADLSSSDVVYDLGCGDGRLLIRAALDYGVRGVGVDVDAALLRQAQARAEQEGVGDRLT-------------------------FQQKNLFETDLRNATVVFIYLLPHLNLRL 111
BLAST of EWM22616.1 vs. NCBI_GenBank
Match: gi|19886829|gb|AAM01668.1| (SAM-dependent methyltransferase [Methanopyrus kandleri AV19]) HSP 1 Score: 63.1586 bits (152), Expect = 1.100e-8 Identity = 52/184 (28.26%), Postives = 85/184 (46.20%), Query Frame = 0 Query: 14 QIEALVARHVKETEA-LEDSHLDSCIDEAAIQVQRHTLSPFLPTAAEDLASIFNILRLGPRHIMVDLGCGDGRPLIAAALLCKCRGVGVDISQQCIALAKSIVSQEGLSDRMVAFFRWDLLS------DQEAVLNRLVEAVEAKAQEAAIECKDGVEAVVVFLYVYPTLLARLVCLLDRLVRAW 190 ++E L+ E E D H+ +C E + +PT E + I L L P++ +VDLGCGDGR +I+AA L C G+GVD+ + + LA++ + D+ + F D+ + + V L+ ++ + E + C VV + + P L V LD L RA+ Sbjct: 6 KVERLLDEFPNEVEYHRSDDHVVTCPTELYL----------VPTPIEIVVEILRKLELTPKNRVVDLGCGDGRFVISAAYLYGCEGMGVDVREDVLELARAKSETLRVDDKTI-FIHSDVRDIDLRELNPDVVFVYLMPSLLEEISEELVSCG---ATVVSYTFEVPGLGVPEVLRLDDLRRAY 175 The following BLAST results are available for this feature:
BLAST of EWM22616.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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