rna8064, rna8064 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8064
Unique Name	rna8064
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3443
Alignment location	KK037247.1:477963..479404 -

Link to JBrowse

Properties


Property Name	Value
Product	histone deacetylase superfamily
Orig transcript id	gnl\|cribi\|Naga_100023g53.3969.mrna
Orig protein id	gnl\|cribi\|Naga_100023g53.3969
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:477963..479404 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100023g53	gene7808	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22653.1	cds8042	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8064	rna8064-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:477963..479404-
coding sequence from alignment at KK037247.1:477963..479404-

mRNA sequence

>rna8064 ID=rna8064|Name=rna8064|organism=Nannochloropsis gaditana|type=mRNA|length=3443bp
ATGATGAACGGATCGAAGTTAAAGTTCAAAAAAATCAGATTGCTCGAAGG
TTTTCGCGTGTTGAAGCAGAAAGTGCGCAAAATGGTGGAGTGCCGTACTG
ACACGCCGGCCATGCTTGAGGCCTTGCAGGCTATCGCCGCCTTTTATGGG
CAGCGGGAGGGGGGAAACACTGCCGAGGCCCGCAAATCCCTCCGTCAAGA
CTTGGAAAAGCAAAACATGGTGTTGTGTGATGATTTCTTGAGACTCTTCG
AAGTCCTCAAGGAACGCTTGGCTGCTTTGGATGCGCACACCGCCAGATTG
GAAGACCACTGCCACGGCATCCATGCACGAATTGAGACAGCGGAGGAAAG
CATGAGCGCCTTCTTAGCCAAGACACGAGTCTTACAAAAACAGCAAGTCG
AGTGTGAGAGCAAAGCAGTACAGCTTCAGGATTTTCTGGACAACTTTACG
TTGTCGGACGCTGAAATTGCGGCGTTGCGATATGAAGCTGTAGAAAAAGT
GCTGCCTGACGGGCATCGTCCATTTTTTGCTGCACTGGCACGCGCGCAAG
AGATCCGGGGGGAATGTGGAGCATTGGTGGGTTCTTCACGACAAAACCTG
GGATTTGAGATGCTGGAAGAACTGTCTGAGCATCAAGAAACAGCATTCAG
GCGCTTGCACTCTTACATCTTGCAGCGTTGCGCGGGATTGGAGCGAGATG
ACCCTCAGGAGGAGGTGGAGGAAAACGATGTGGCCTTGGGGTTGGGACTG
CGGACGATACGGGACCGGCCCGCACTATTTGTTCACTGCCAGGAGTGTGT
GTTGCAACGCCGCAAGGACGTGGTGCGACGCCGCTTCCTGCAAGCCCTGT
CTGGTAGGGATGAGGGGGCGGAGGATGGCGACGTCAGGGAGGAGAAAGGC
AAAAGGAGCATGAGTGGCAGCGGGCAGCGGCCAATCGACATGCATTCGCA
TGACCCTGTCCGCTACTTAAGCGATATACTAGCCTGGCTCCATCAAGCGG
TGGCCTCAGAGCGAGAGTTTTTGACCAATCTGTTCAGGCCGGAGGCGCCC
GGGGGGTCGGGGGGGCAGGGAGAGCGGCCGTTGCCGGGCGAGGGCGTGCC
GACTGATGGTCAGGAAAGTGGCACCCTCGAGGATCACAATCAGGAGCTGT
CCCAGGCGGCGATGCTGGGGGGAATCATGGAGGGTGTGGTCGCCCTGCTC
AAAGCCCGCATCCTCCAGCTCTTGGAGCCCGCCGACTCGTACGGCGTCAC
AAACCGGGAGAGCAACGCCACCCGTTCCCAGATTTTCCTCCTCTTCCGGC
TCCTCCATCTTCTGGCTTTCTACGACGTCACTTTTCAGAAGCTCGGGCTG
ACTGCAGACGCCTCCGCGCTGGGCAAGAGCATGCGGGAGACCCGCGTAGA
ATGCCAGCGTCGATTCGAGGGGCGCCTCGAGGCCTGGGGAAGCCAGAGCT
TGATGTCCGTGCCCGCTTGTCCGATCGATCTATCTCCCGCCCAAGTCATG
GGGGAGTTGGGGCAGTCATTGGCAGAAATCGTCGCTGTGCACGAAGCTTC
CCTCGTCCCGCCCGGGGCCCTCGGGTACGCCCTCGACGAGGTCTTGACCG
CGCTCATCGAGCCCGCCTTGCGCGCCTGTCGCTCTGGGGCGGAGGGCCTC
GGCCCATCCGATGTGGCCCTCTACATGATCAACAACGCAGCGATTCTCTC
TGCTAGCCTGACCAGTGGCAGCGACCCTCCCTCCCCAGCGGTCACGGCGT
GGGTGGAAAAATTGCGTGAAGAGATGGAAACCTGGCTCGGACTCGTAGTC
AGGTACGAATCGGAGACCGTGCTGGAACGCACGGGCCTGGGACCTCTTCT
GGACCGGGCGCAGGCGGTGTCGGCGTCCTCCTCGGGGACCCTGTCGGCGA
CGGCGGGCCTAGACAGCGAGAGCGTGACGAGGACCATGGAGGCCTTCTAT
CGAGGCCTCTTCACGCTCCCGCAGTTCGAGCGCCTGCAACAGCCTGCCCT
TCGAGCACGGGCGCGGCAGCAAACATCCGCGATCATAGCGCAGCGGCACG
AGAAGGCTCACGCCCTCTTTCGGCGGGCTGAGAGCGGCTACCCTGACCAC
GAAACCTTCCTGGCGCATACGCCCGAGCAGGTGAAGATATTGCTCGACTG
CGACGACTGAGGGGGGTGGGCGTAGGGGGATGTGGTCGGTGGGATGGGAT
CAGAGGGCAGGGAGGGGCGAAGGAGGGGGAACGGAGGACTCGAGAGGGGG
AGGGTGCTCAACGTATGCTATGGTACTTGGTACTTTAAAGTTGCTACCGA
ACTTGATTTCTCTGTGAGCCTCCTCCCGGGCGTCACCTCAACAAAGGGAC
CATTTTACTCCCACCCCCAAAGAACTCCGCCGCCCCGACGTAAACATCGG
CGTGGGCATTGATGATGTCCGCGTACGGCCCTGAGGAGGGATCGCTGTCA
GAGGGATAGCCCCCCCCTGCCGTCACCACCAGTTTGCTGCCGTAGGCTTC
CACGAACTGGAACAGACGCAGGTTGCGCCGTTGGAGGCCTGCGCGCGTGA
GGGCCAGCTTCCCGAGCCTGTCACTGGCGTGGATGTCCACGCCCGCCTGG
AAGAAGACGAGGTCGGGAGCCTGCGCTTCGAAGACCAAGGGCAGATACCG
CTCCAACAGGGACAGGTAGCCTGCGTCCCCGGTCCCGGGCTTCACTTCCA
CGTCCAGGTCGGACGCTTGCTTTTCAGAGAAGTAGTTTGCGTCACAATGC
ATGGAGAAGGTGAAGACTCGGCTGTCGTCTTGGAAGAGGACCGCGTTGCC
GTTTCCCTGGTGGGTGTCGAGATCCACGATCAAGATCTTTCGAACTTTGT
CCGGATAGTCGCGTAGGGCGACATTGGCAGCCACAGCAATGTCGCTAAAG
ATGCAGAAACCCTCCATGCGCGCCTGAAATGCGTGATGAGTGCCCCCCGC
CAGGTGCGCGCCGACTGGTAAATCGCTTTGAAGGACTGCGTGAGTAGCAG
CCACTGTGCCCCCCACCGACGATAAGGTACGGTTCACGTGCTGCTCGTTC
CAATCAAATCCTGACTCCCGTTTTTCCTGCGCTGTCACATTGCCCACGAG
GTAGCGCTGGATGTAAGATCGATCGTGGGTGGTTTCTAAGTCCCGGACGG
TAGATAAGGGAGAAGGATGGAATCCGACGCCCGGCAAGGAGAAGAGGCGT
TGTTGCGCCTGTCTACGGAACGCCGCGTACTTTTCCATCGGGAAACGGTG
TCCTTCGGGCATTTTGACGTGGAATATATCGTTATAAAAAAAATATAAAG
GGTCTTTCACGCCCCTCTGGTCTCCTCCCTGCGCTGTATTTGAAGTTACT
ACTACAGACGAAAATCGCCTCGTCACCTTTAAAGCGGGTCTTAGACTCCT
GACACCAGCCCCAATAAAAACTAGACATGCAATCATCATGGCT

protein sequence of rna8064

>rna8064-protein ID=rna8064-protein|Name=rna8064|organism=Nannochloropsis gaditana|type=polypeptide|length=449bp
MTLVRSGSRTTTPLSQVDVQFNRVSNALDIQKHIRPDRDRKSHHTPRGGR
SSICQATALLTPQTNVQAGKRRKDQMRKEAAMMIACLVFIGAGVRSLRPA
LKVTRRFSSVVVTSNTAQGGDQRGVKDPLYFFYNDIFHVKMPEGHRFPME
KYAAFRRQAQQRLFSLPGVGFHPSPLSTVRDLETTHDRSYIQRYLVGNVT
AQEKRESGFDWNEQHVNRTLSSVGGTVAATHAVLQSDLPVGAHLAGGTHH
AFQARMEGFCIFSDIAVAANVALRDYPDKVRKILIVDLDTHQGNGNAVLF
QDDSRVFTFSMHCDANYFSEKQASDLDVEVKPGTGDAGYLSLLERYLPLV
FEAQAPDLVFFQAGVDIHASDRLGKLALTRAGLQRRNLRLFQFVEAYGSK
LVVTAGGGYPSDSDPSSGPYADIINAHADVYVGAAEFFGGGSKMVPLLR

mRNA from alignment at KK037247.1:477963..479404-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8064 ID=rna8064|Name=rna8064|organism=Nannochloropsis gaditana|type=mRNA|length=1442bp|location=Sequence derived from alignment at KK037247.1:477963..479404- (Nannochloropsis gaditana)
CCCCGGCCACAATGACATTGGTTCGCTCTGGGTCCAGAACGACTACACCT
TTGAGTCAGGTCGATGTCCAATTTAACCGTGTGAGCAATGCATTGGACAT
ACAAAAGCACATACGGCCTGACCGTGATCGAAAGAGTCATCACACGCCGA
GGGGGGGGAGGTCGAGCATATGTCAAGCGACCGCGTTACTGACTCCACAA
ACAAACGTACAAGCAGGAAAGCGACGAAAAGATCAGATGCGCAAGGAGGC
AGCCATGATGATTGCATGTCTAGTTTTTATTGGGGCTGGTGTCAGGAGTC
TAAGACCCGCTTTAAAGGTGACGAGGCGATTTTCGTCTGTAGTAGTAACT
TCAAATACAGCGCAGGGAGGAGACCAGAGGGGCGTGAAAGACCCTTTATA
TTTTTTTTATAACGATATATTCCACGTCAAAATGCCCGAAGGACACCGTT
TCCCGATGGAAAAGTACGCGGCGTTCCGTAGACAGGCGCAACAACGCCTC
TTCTCCTTGCCGGGCGTCGGATTCCATCCTTCTCCCTTATCTACCGTCCG
GGACTTAGAAACCACCCACGATCGATCTTACATCCAGCGCTACCTCGTGG
GCAATGTGACAGCGCAGGAAAAACGGGAGTCAGGATTTGATTGGAACGAG
CAGCACGTGAACCGTACCTTATCGTCGGTGGGGGGCACAGTGGCTGCTAC
TCACGCAGTCCTTCAAAGCGATTTACCAGTCGGCGCGCACCTGGCGGGGG
GCACTCATCACGCATTTCAGGCGCGCATGGAGGGTTTCTGCATCTTTAGC
GACATTGCTGTGGCTGCCAATGTCGCCCTACGCGACTATCCGGACAAAGT
TCGAAAGATCTTGATCGTGGATCTCGACACCCACCAGGGAAACGGCAACG
CGGTCCTCTTCCAAGACGACAGCCGAGTCTTCACCTTCTCCATGCATTGT
GACGCAAACTACTTCTCTGAAAAGCAAGCGTCCGACCTGGACGTGGAAGT
GAAGCCCGGGACCGGGGACGCAGGCTACCTGTCCCTGTTGGAGCGGTATC
TGCCCTTGGTCTTCGAAGCGCAGGCTCCCGACCTCGTCTTCTTCCAGGCG
GGCGTGGACATCCACGCCAGTGACAGGCTCGGGAAGCTGGCCCTCACGCG
CGCAGGCCTCCAACGGCGCAACCTGCGTCTGTTCCAGTTCGTGGAAGCCT
ACGGCAGCAAACTGGTGGTGACGGCAGGGGGGGGCTATCCCTCTGACAGC
GATCCCTCCTCAGGGCCGTACGCGGACATCATCAATGCCCACGCCGATGT
TTACGTCGGGGCGGCGGAGTTCTTTGGGGGTGGGAGTAAAATGGTCCCTT
TGTTGAGGTGACGCCCGGGAGGAGGCTCACAGAGAAATCAAGTTCGGTAG
CAACTTTAAAGTACCAAGTACCATAGCATACGTTGAGCACCC

Coding sequence (CDS) from alignment at KK037247.1:477963..479404-

>rna8064 ID=rna8064|Name=rna8064|organism=Nannochloropsis gaditana|type=CDS|length=1350bp|location=Sequence derived from alignment at KK037247.1:477963..479404- (Nannochloropsis gaditana)
ATGACATTGGTTCGCTCTGGGTCCAGAACGACTACACCTTTGAGTCAGGT
CGATGTCCAATTTAACCGTGTGAGCAATGCATTGGACATACAAAAGCACA
TACGGCCTGACCGTGATCGAAAGAGTCATCACACGCCGAGGGGGGGGAGG
TCGAGCATATGTCAAGCGACCGCGTTACTGACTCCACAAACAAACGTACA
AGCAGGAAAGCGACGAAAAGATCAGATGCGCAAGGAGGCAGCCATGATGA
TTGCATGTCTAGTTTTTATTGGGGCTGGTGTCAGGAGTCTAAGACCCGCT
TTAAAGGTGACGAGGCGATTTTCGTCTGTAGTAGTAACTTCAAATACAGC
GCAGGGAGGAGACCAGAGGGGCGTGAAAGACCCTTTATATTTTTTTTATA
ACGATATATTCCACGTCAAAATGCCCGAAGGACACCGTTTCCCGATGGAA
AAGTACGCGGCGTTCCGTAGACAGGCGCAACAACGCCTCTTCTCCTTGCC
GGGCGTCGGATTCCATCCTTCTCCCTTATCTACCGTCCGGGACTTAGAAA
CCACCCACGATCGATCTTACATCCAGCGCTACCTCGTGGGCAATGTGACA
GCGCAGGAAAAACGGGAGTCAGGATTTGATTGGAACGAGCAGCACGTGAA
CCGTACCTTATCGTCGGTGGGGGGCACAGTGGCTGCTACTCACGCAGTCC
TTCAAAGCGATTTACCAGTCGGCGCGCACCTGGCGGGGGGCACTCATCAC
GCATTTCAGGCGCGCATGGAGGGTTTCTGCATCTTTAGCGACATTGCTGT
GGCTGCCAATGTCGCCCTACGCGACTATCCGGACAAAGTTCGAAAGATCT
TGATCGTGGATCTCGACACCCACCAGGGAAACGGCAACGCGGTCCTCTTC
CAAGACGACAGCCGAGTCTTCACCTTCTCCATGCATTGTGACGCAAACTA
CTTCTCTGAAAAGCAAGCGTCCGACCTGGACGTGGAAGTGAAGCCCGGGA
CCGGGGACGCAGGCTACCTGTCCCTGTTGGAGCGGTATCTGCCCTTGGTC
TTCGAAGCGCAGGCTCCCGACCTCGTCTTCTTCCAGGCGGGCGTGGACAT
CCACGCCAGTGACAGGCTCGGGAAGCTGGCCCTCACGCGCGCAGGCCTCC
AACGGCGCAACCTGCGTCTGTTCCAGTTCGTGGAAGCCTACGGCAGCAAA
CTGGTGGTGACGGCAGGGGGGGGCTATCCCTCTGACAGCGATCCCTCCTC
AGGGCCGTACGCGGACATCATCAATGCCCACGCCGATGTTTACGTCGGGG
CGGCGGAGTTCTTTGGGGGTGGGAGTAAAATGGTCCCTTTGTTGAGGTGA

Synonyms

Publications