rna8058, rna8058 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8058
Unique Name	rna8058
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3792
Alignment location	KK037247.1:461798..463681 +

Link to JBrowse

Properties


Property Name	Value
Product	CBF1-interacting co-repressor CIR, N-terminal domain protein
Orig transcript id	gnl\|cribi\|Naga_100023g47.3973.mrna
Orig protein id	gnl\|cribi\|Naga_100023g47.3973
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:461798..463681 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100023g47	gene7802	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8058	rna8058-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22657.1	cds8036	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:461798..463681+
coding sequence from alignment at KK037247.1:461798..463681+

mRNA sequence

>rna8058 ID=rna8058|Name=rna8058|organism=Nannochloropsis gaditana|type=mRNA|length=3792bp
GTACAGGCGAGTGTCAGTGTCCCGTGCTGTCTGCCCTTGGGCACACGCTG
TTCGATATCAGCCATGTCGTCGCAGTACAGCATCGTCCACCTCAAAGTGC
GGGCTGAGGCAGAGTTTGGGCAGGTCGTGCACGTGTCGGGAAGTTCCTTC
ACCATGGGCAATTTTAGCACGGCCGAGGTAAGATTGTTGGTTTGAAAGGG
TGGAGGGCCGTTTGTACGGGCATGGAGAGTCACGTGGCGGGCAGTGAAAG
GTCTTAGCGTTGAGGGGGGTGCTCGAGGATTGGGGGCTTGCCACGCAACC
GTCTAGCATATTCATGGACGGGCGCATACGGCACGTAGAACAATTCGTTC
GACGACCGGATTGAGGCATGAGAATCACCCTTGGAATTTCCTGACAGGCC
GTCCCTCTGGTCACCAGTCCTGAGGAATACCCCGTGTGGCGTACCTTCAA
GCCCCTGGTCGTGCCGCGGGGCATACCGCAGGCATACAAGTATGCCATCT
TCGAGGGGGGGCACTTCAAGCGCTGGGAGGCCCTGGAAATTCCCCGTGTC
ATTTGCGTGGACGACTTCCACGTGGAGCTGTCGGACGTGCTGGACGAGCC
GGCGGAGGCTGACGACGCCCACGCCCCGCTCACGCCCAGCGCCATAGCCA
AGCGCGAGGCGATCAACCGCATCCGCCGCACTCTCTCCCAGACGGTGGAG
CTGACGGAGGACGCCGCCTCTCTGGATGCCCGCAAGCTCCTGGAGACGTC
GACCAAGGAGCATTCCCCCCCGCCCGGCTCCCACCTTTACCTGGTCTGTT
TCCATCTGCCCGTGACCATCGCCAAGGACGCAGGCGGGGCCTGGACGGCG
GAGTGGAACGAGAGCCTGATCGCCAAGACCGACCATTCCATCTCCTCGGA
CATGCTCACCTTCTGGGTCGGGACCGTCTCGGCGTCGGACCTGAGCGAGG
CGGACAAGCAGGAGATCCGGGCCCTGCTCGAGCCCATGCGCTGCCACCCC
ATCTTCATGCCGCGGGAGATGATCGAGGGCCACTACCACGGGTACTGCAA
GAAGGTCATGTGGCCGCTCTTCCACAACGTGGAGATGCTGGACTCGTGCG
GGGCGGACTGGAACTACAAGGCGGACGGCCGGGCCTGGGACCCGGCCTCC
GTGTGGGCCGTGGGCGGCAAGGAGCATTGGTGGGGCACCTACTGCCAGGT
GAACCGGATCTTCCGCGACGTGGTGGTGGAGGTCTGCAAGCTGGAGGAGG
GCGACGTGCTGTGGGTCCACGACTACCATCTGATGCTTCTCCCCTCCCTC
GTCTCCGCCCACGAAGAGCGGGTCCACCGGCACCGCAAGTGCTCCATCAT
CTTCTTCCTCCACATCCCCTTTCCCACCAGCCAGATCTTCCGCGCTCTTT
ACTGCGGGGAGGACCTGCTGAAGGGCATGCTCTCGGCGGACGTGATCGGC
TTCCACGCCTTCGACCACGCCCGCCACTTCCTGAACGCCTGCAAGCGCAT
CCTGGGGCTCTCCTATTTCAACAAGAGCGGGGGCCTCATCGGGATCGAGC
TGGAGACGCGGACGGTCACGGTCTTGATCTCGCACGTGGGCATCGAGGGC
TCTCTCCTCACCAAGGCCATGGCCACGGCGCGCGTGCAGGAGGAGACCGC
CGCCCTCCGGCACAAGCACAAAGGCAAGCTCCTGATCGCGGGGCTGGACA
TCTCCCAGCGCCTGAGCGGGATTGCCCTGAAGCTCCTGGCCTTCGAGCGG
CTCTTGACGGAGTACGAGTGCTACCGGGATCGCGTGGTCATGGTCCAGCG
CTCCCTCCTGACCGGCAGCCGGGCTGAGGACGAGGAGGCGACCACGGCCG
AGGTCCGCGAGCTGGTGGCGCGCGTCAACGCGAAGTTCGGACCCGTCATC
GACTACCAGGAGCTCCGTTCTAACCGGCTTCCCAGGGAGGATCGGATCGC
CCTCTGGCTGGCTTCGGATGTCCTGGTCATCGCCGCCATCCGGGAGGGTC
TGAACCTGCACCCGCTCGAGTTCACTTTTGTCAAGCAGGGCGAAGAGCAC
CCTCCCGGCGTGGTCCTTGCCTCCGAGTTCTCTGCCTGCTCCTCCTTGCT
CAATGGGGCCCTGCGCATCAACCCCTTCGACATCAAACGGGTGGTGGTCT
CCTTGGATCACGCCATCCGCTTAGAGCTGCAAGAGCGCCTGAGCCGACGA
GACCGAGACTTGCCCTACATCTCGGAGCGCCCCTCCTCCCTGTGGACGCG
CCAAGTGCTGCAAGATCTATGGGCCGCCAAGGCGGAGACGCCCGAGCTTC
TTAAAAGGGATACGGGGGGAGTGCGTGTCCAGTACCAGCCCGTCTGGCAA
ACCTCCCACAATCACCTCCGGGAGACGGAGGTGGAGGGCGCCTACAGTAA
GGCGACTCGCAGGTTCATCTTCACGGACTTCGGGGGCACTCTGATGGAGA
AGGAGAAGGTGGATTTGTACATCAAGCGCTCCTTCACCCAGACCACCGGC
AAGCGGCCCTCGCCCTCCGTGATGGAGTCCCTGCGCCTCCTCTCCGCCGA
CCCCAAGAATGAGGTCTTTATCATCAGCGGCCTCCAACTCCTGCCTCTGG
AGGAGGTCTTCGGCCACCTCGACCGCATCGGCCTGGCGGCGGCCAACGGC
CTGTACCTGTCCATGCCACAAGAATCGGACGCAGACAAGGAGTCTCTGTC
GACCACCCCTCGGTCCGTTCCTCCCGGATCGCACCCTGAGGACGCGAGCG
GCCTTCCCCAGCAGCACAAGGGCAAGAAGCGATCCTGGAGCCTCTTGGAC
TACGGCGTGAAGTGGGCCGAGGTCAAGGACATTGCCTTGCCCATCCTGGA
GCGATACACGGCGCGCACCAACGGGAGCAGCGTCCGCCTCCGGGACCCCG
GGATCGCCTGGAGCTACTACTCGACTGACCCCGAGTGGGGCCTGATGCAG
GCCAAGTCGGTGATCGCCGAGTTGGAGGAGGCCTTGGCCGCGCACGATGT
GAAGGTGGTGCACCTGAAGGGGATGGTGGAGATCGTTCCCAAGCGCTTGA
ACAAGGGCGTGGTCCTCCGGTATGCCATCCAGAGCAAGGAGGGCCCCTCC
CCAGACTTCATCATGTGCATGGGCGACGATGCCAGCGACGAGTATATGTT
CACCTCGCTGTATTCCTACCTCTCCGAGACCGCCGAGACGGAGCTCGCGC
GCTCTCACAAGGCCTACGACGCAGCCGCGGCCGCAGCTGCCGATGGAAGT
GAGCCTGTTCAGGGGCTGTCACAACGTCGACCCTCGCAGCAGGCGGAGGA
AGAGATTACCAAATACGTGTTCACCTGCTCTGTGGGCAAACATCGATCGC
ATGCCTCGTTCTACGTGCACAATGTGGAGGAGGTGCGCAAACTGTTGGAA
GGATTAGCGGCATTGTCCTCTTGAGAAGGAGGGGAGGCAGGGGTGAGCAT
GGCCCTGGGCGGAGAGGGACTGGCGGGCAGCCTGTACAGTTGTGAGAGTA
GCGGTACTGTGTGTTTAAGGGAGTGCATGTGTGTGTGTGTGGATGTCAGT
GACTGTGTACGTTCGCTTGATGTTGGATGGATTGGTCTACAGAGGACGTT
TCAGAAGCCTCTGACGTTCAGATTGGATGAAAAGAAGTGGCCACAAGCCC
AGCAAGCTGTCGCTGTGCTATGCATGTGCGAGGTTAAGTCAAGACGCGAA
AGCGCTTTCAATTCAAAAGCTTCGGCCAAACGAGAATCCATTGTCCCCTT
TTCTTCTTAAGTATCCGGCGCGTCATGCGGGATCCATCTCCC

protein sequence of rna8058

>rna8058-protein ID=rna8058-protein|Name=rna8058|organism=Nannochloropsis gaditana|type=polypeptide|length=400bp
MSLKFLAKKTWNPTNLKNVEKVWKAEQKAANEEKRMAEFRKQIAEERQLQ
ELKELQVSAGLVDKNQTAKLDWMYEGPMATMQDHQQDTEQYLLGKEVTVK
EQDSEVKRVENQPGMLYLNSVSAKNDLFTRLHEDPLLLIKQNELKKREDV
VKNPVKMARIRQQLEAELARKKEKKNAKREKKRARKEAKKAKKEKKRQKD
SMDSAEAASLHREQDKGKKGSRAQESDGGSTESSGSEAEAKERKQRYGLQ
TYGGGSNGANGNASGDGRARALGPDPEVLAAKEKARLEEERERRERLRRK
PLTEKEKAERLSAMRLDGIVNEEQRRSRVEKGRHQEKEEAEREAGTTAEN
GRGSRREDRPEFLQKLGVQVYMGGDETLEERMDRLRHTRQRNRGGEAGFL

mRNA from alignment at KK037247.1:461798..463681+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8058 ID=rna8058|Name=rna8058|organism=Nannochloropsis gaditana|type=mRNA|length=1884bp|location=Sequence derived from alignment at KK037247.1:461798..463681+ (Nannochloropsis gaditana)
ATGTCTCTAAAATTCTTAGCCAAGAAGGTACGTACTCAGCCTGGGACTGA
ATGGAGTGAACGCTGACGTCCCACTTCATTCTTGGGCATTTCTCCCCCGT
ATATTCCTACGCAGCAACCCATACACCCTTACATATTGAATTTATGcatt
tcttctcccgcctcTTGCCcactcctctctcctcaccctTAGACCTGGAA
CCCAACTAATCTCAAAAATGTTGAGAAAGTATGGAAGGCGGAGCAGAAGG
CAGCGAACGAGGAAAAACGCATGGCTGAGTTTCGGAAGCAGATCGCGGAA
GAGCGGCAGCTTCAGGAGCTCAAGGAATTGCAAGTGTCGGCCGGTCTGGT
CGACAAAAACCAAACTGCAAAATTGGACTGGATGTATGAAGGGCCGATGG
CGACGATGCAGGATCATCAGCAGGACACAGAACAATACTTACTTGGCAAA
GAGGTGACTGTGAAGGAGCAGGACTCGGAGGTCAAGCGCGTGGAGAACCA
GCCTGGCATGTTGTACCTGAACTCTGTCAGCGCGAAAAACGATCTCTTTA
CCCGTCTTCACGAAGATCCACTCCTTTTGATCAAGCAAAACGAATTGAAG
AAACgcgaggacgtggtcaaAAACCCTGTGAAAATGGCACGAATCAGGCA
GCAGTTAGAGGCTGAGTTGGCgcggaagaaagagaagaagaatgcgaaga
gggagaaaaagcgcgcccgaaaggaggcgaagaaggccaagaaagagaag
aaacGGCAGAAGGATAGCATGGACAGCGCCGAGGCGGCCTCTTTGCATCG
GGAgcaggacaaggggaagaagggctcCCGGGCCCAGGagagcgacggag
gaagcacCGAGAGTTCTGGtagcgaggcggaggcgaaagAAAGGGTAGGA
AAGGATGAGGACAGGACTAGAATGCGTGAGGAGCGGGCTGTTGGTGGAGC
AGTGAggcaaaggggagaggggagcgcTGCCCAGGAACGCGGGCGAAGGC
CGCGTGAGgagcttctccctccgcctcggtcAGACCGGCGAGTTGGGAGC
CGAAGCCGTAGCCGAGAAGGGCGGTACGAGACAAGGCGGGAGAGcagttg
gagggagggagggagagagggagggagggaaggtgcgAGGAGCGGCGATG
GCAGGCGCTCTCCAACGCCCCCGCGACGGCGGGAAGAGCGCGAGGAGCGG
GATCGGCGCAGGGCTttggggagagagaggaaagagaggagggaggagag
gatgattgagggaggggagcagggacaCGGGCAGAGAAAAgcggaaaagg
aaggcgcgggagggtctggggccgcgaggggggaggcggaggctcgTGGA
GCATATCGGCGTCGGCGGGAcagcgacgaggatgaggagtcGGCGGGAAC
GAAGCGGCAGAAGCAGCGTTACGGGCTACAGACGTATGGAGGCGGCAGCA
ATGGAGCCAACGGCAATGCCTCGGGTGacgggcgggcgcgggcgctGGGG
CCAGACCCGGAAGTTCTGgcagcgaaggagaaggctcgtctcgaggagga
gcgcgagaggagggagaggctgcggCGCAAGCCTTTgacggagaaagaga
aagcggagaGACTGTCAGCGATGCGGCTGGACGGCATTGTGAATGAAGAA
CAGCGGCGCTCTCGCGTGGAGAAGGGCCGTcaccaggaaaaggaggaggc
ggagcgggaggcaggcaCGACCGCGGAGAATGGGCgagggtcgaggaggg
aggataggcCGGAGTTCTTGCAAAAGCTAGGCGTACAGGTGTACATGGGG
GGCGATGagacgctggaggagagAATGGACCGTCTCAGACACACGCGACA
GCGGAATCGGGGAGGCGAAGCCGGCTTTTTGTAA

Coding sequence (CDS) from alignment at KK037247.1:461798..463681+

>rna8058 ID=rna8058|Name=rna8058|organism=Nannochloropsis gaditana|type=CDS|length=3609bp|location=Sequence derived from alignment at KK037247.1:461798..463681+ (Nannochloropsis gaditana)
ATGTCTCTAAAATTCTTAGCCAAGAAGACCTGGAACCCAACTAATCTCAA
AAATGTTGAGAAAGTATGGAAGGCGGAGCAGAAGGCAGCGAACGAGGAAA
AACGCATGGCTGAGTTTCGGAAGCAGATCGCGGAAGAGCGGCAGCTTCAG
GAGCTCAAGGAATTGCAAGTGTCGGCCGGTCTGGTCGACAAAAACCAAAC
TGCAAAATTGGACTGGATGTATGAAGGGCCGATGGCGACGATGCAGGATC
ATCAGCAGGACACAGAACAATACTTACTTGGCAAAGAGGTGACTGTGAAG
GAGCAGGACTCGGAGGTCAAGCGCGTGGAGAACCAGCCTGGCATGTTGTA
CCTGAACTCTGTCAGCGCGAAAAACGATCTCTTTACCCGTCTTCACGAAG
ATCCACTCCTTTTGATCAAGCAAAACGAATTGAAGAAACgcgaggacgtg
gtcaaAAACCCTGTGAAAATGGCACGAATCAGGCAGCAGTTAGAGGCTGA
GTTGGCgcggaagaaagagaagaagaatgcgaagagggagaaaaagcgcg
cccgaaaggaggcgaagaaggccaagaaagagaagaaacGGCAGAAGGAT
AGCATGGACAGCGCCGAGGCGGCCTCTTTGCATCGGGAgcaggacaaggg
gaagaagggctcCCGGGCCCAGGagagcgacggaggaagcacCGAGAGTT
CTGGtagcgaggcggaggcgaaagAAAGGAAGCAGCGTTACGGGCTACAG
ACGTATGGAGGCGGCAGCAATGGAGCCAACGGCAATGCCTCGGGTGacgg
gcgggcgcgggcgctGGGGCCAGACCCGGAAGTTCTGgcagcgaaggaga
aggctcgtctcgaggaggagcgcgagaggagggagaggctgcggCGCAAG
CCTTTgacggagaaagagaaagcggagaGACTGTCAGCGATGCGGCTGGA
CGGCATTGTGAATGAAGAACAGCGGCGCTCTCGCGTGGAGAAGGGCCGTc
accaggaaaaggaggaggcggagcgggaggcaggcaCGACCGCGGAGAAT
GGGCgagggtcgaggagggaggataggcCGGAGTTCTTGCAAAAGCTAGG
CGTACAGGTGTACATGGGGGGCGATGagacgctggaggagagAATGGACC
GTCTCAGACACACGCGACAGCGGAATCGGGGAGGCGAAGCCGGCTTTTTG
TAAATGTCTCTAAAATTCTTAGCCAAGAAGACCTGGAACCCAACTAATCT
CAAAAATGTTGAGAAAGTATGGAAGGCGGAGCAGAAGGCAGCGAACGAGG
AAAAACGCATGGCTGAGTTTCGGAAGCAGATCGCGGAAGAGCGGCAGCTT
CAGGAGCTCAAGGAATTGCAAGTGTCGGCCGGTCTGGTCGACAAAAACCA
AACTGCAAAATTGGACTGGATGTATGAAGGGCCGATGGCGACGATGCAGG
ATCATCAGCAGGACACAGAACAATACTTACTTGGCAAAGAGGTGACTGTG
AAGGAGCAGGACTCGGAGGTCAAGCGCGTGGAGAACCAGCCTGGCATGTT
GTACCTGAACTCTGTCAGCGCGAAAAACGATCTCTTTACCCGTCTTCACG
AAGATCCACTCCTTTTGATCAAGCAAAACGAATTGAAGAAACgcgaggac
gtggtcaaAAACCCTGTGAAAATGGCACGAATCAGGCAGCAGTTAGAGGC
TGAGTTGGCgcggaagaaagagaagaagaatgcgaagagggagaaaaagc
gcgcccgaaaggaggcgaagaaggccaagaaagagaagaaacGGCAGAAG
GATAGCATGGACAGCGCCGAGGCGGCCTCTTTGCATCGGGAgcaggacaa
ggggaagaagggctcCCGGGCCCAGGagagcgacggaggaagcacCGAGA
GTTCTGGtagcgaggcggaggcgaaagAAAGGAAGCAGCGTTACGGGCTA
CAGACGTATGGAGGCGGCAGCAATGGAGCCAACGGCAATGCCTCGGGTGa
cgggcgggcgcgggcgctGGGGCCAGACCCGGAAGTTCTGgcagcgaagg
agaaggctcgtctcgaggaggagcgcgagaggagggagaggctgcggCGC
AAGCCTTTgacggagaaagagaaagcggagaGACTGTCAGCGATGCGGCT
GGACGGCATTGTGAATGAAGAACAGCGGCGCTCTCGCGTGGAGAAGGGCC
GTcaccaggaaaaggaggaggcggagcgggaggcaggcaCGACCGCGGAG
AATGGGCgagggtcgaggagggaggataggcCGGAGTTCTTGCAAAAGCT
AGGCGTACAGGTGTACATGGGGGGCGATGagacgctggaggagagAATGG
ACCGTCTCAGACACACGCGACAGCGGAATCGGGGAGGCGAAGCCGGCTTT
TTGTAAATGTCTCTAAAATTCTTAGCCAAGAAGACCTGGAACCCAACTAA
TCTCAAAAATGTTGAGAAAGTATGGAAGGCGGAGCAGAAGGCAGCGAACG
AGGAAAAACGCATGGCTGAGTTTCGGAAGCAGATCGCGGAAGAGCGGCAG
CTTCAGGAGCTCAAGGAATTGCAAGTGTCGGCCGGTCTGGTCGACAAAAA
CCAAACTGCAAAATTGGACTGGATGTATGAAGGGCCGATGGCGACGATGC
AGGATCATCAGCAGGACACAGAACAATACTTACTTGGCAAAGAGGTGACT
GTGAAGGAGCAGGACTCGGAGGTCAAGCGCGTGGAGAACCAGCCTGGCAT
GTTGTACCTGAACTCTGTCAGCGCGAAAAACGATCTCTTTACCCGTCTTC
ACGAAGATCCACTCCTTTTGATCAAGCAAAACGAATTGAAGAAACgcgag
gacgtggtcaaAAACCCTGTGAAAATGGCACGAATCAGGCAGCAGTTAGA
GGCTGAGTTGGCgcggaagaaagagaagaagaatgcgaagagggagaaaa
agcgcgcccgaaaggaggcgaagaaggccaagaaagagaagaaacGGCAG
AAGGATAGCATGGACAGCGCCGAGGCGGCCTCTTTGCATCGGGAgcagga
caaggggaagaagggctcCCGGGCCCAGGagagcgacggaggaagcacCG
AGAGTTCTGGtagcgaggcggaggcgaaagAAAGGAAGCAGCGTTACGGG
CTACAGACGTATGGAGGCGGCAGCAATGGAGCCAACGGCAATGCCTCGGG
TGacgggcgggcgcgggcgctGGGGCCAGACCCGGAAGTTCTGgcagcga
aggagaaggctcgtctcgaggaggagcgcgagaggagggagaggctgcgg
CGCAAGCCTTTgacggagaaagagaaagcggagaGACTGTCAGCGATGCG
GCTGGACGGCATTGTGAATGAAGAACAGCGGCGCTCTCGCGTGGAGAAGG
GCCGTcaccaggaaaaggaggaggcggagcgggaggcaggcaCGACCGCG
GAGAATGGGCgagggtcgaggagggaggataggcCGGAGTTCTTGCAAAA
GCTAGGCGTACAGGTGTACATGGGGGGCGATGagacgctggaggagagAA
TGGACCGTCTCAGACACACGCGACAGCGGAATCGGGGAGGCGAAGCCGGC
TTTTTGTAA

Synonyms

Publications