rna8048, rna8048 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8048
Unique Name	rna8048
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	912
Alignment location	KK037247.1:431552..435410 -

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Properties


Property Name	Value
Product	trehalase
Orig transcript id	gnl\|cribi\|Naga_100023g36.3949.mrna
Orig protein id	gnl\|cribi\|Naga_100023g36.3949
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:431552..435410 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100023g36	gene7792	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22633.1	cds8026	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8048	rna8048-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:431552..435410-
coding sequence from alignment at KK037247.1:431552..435410-

mRNA sequence

>rna8048 ID=rna8048|Name=rna8048|organism=Nannochloropsis gaditana|type=mRNA|length=912bp
ATGGACATTGACTTGAATGGCGTCGAAGAAGAAGAATTTGAGTTTTTGGC
CTTAGAGGCAGTTCTCATGACTATTAACGATCATTTCAAGAGCAAATTGA
AAGATCTGCGCCCTCACATAATCAAAAACGGGAAAGCCCTGCTTGGAAAC
GCTACTCTGAACAGCGAACACCAAGACACGCTTCGCCAGCTCAAAAGCAA
GGTTACTACATGTCAAGCAAAAGTGCGTTCGCTGCACAAAACAGTGGTTG
ACCTTTTAGATGACGAAGAGCATCTGCAGATGCTTCACTTGACCCGCACC
CAGAGTCAGCAACAGCAACAACAGCAACAACAGCAACAGCATCAGAAACA
AGAAGATCAGAAACCAAACTTAGCCTCCGCACAAAAGAACGAGTATCATC
AACAGCAAGAATGGCGTTTTCGAGACACACACGAAACTGCCATGCTTGGC
AGCTTTGAAGGCGGCAGGACAAGGGGAAGAGGCTGCTCAATTGGTGGCGA
AACCGACCAACAGCTAGCTGGCGTGCTCATGGATGCGGAAGATAGCGACG
AGGCAGAAATTTTGCTGGAGTCCTTCTTGGGCGACTTTAATGAAATGATC
ATGAAATGGGAGCTTATTAAGGAGGACATGCAGAACACTGAGAACTACGT
GCAAGTCAAGCTCGACATGGCCCGCAACAAGCTGCTTACGATCGGCACAC
TCTTTGCACTCGTCAACGTTTGTTTCGCGTTTGGCGCCTTGATATCGGGA
ATATTTGGTATGAATTTGTTTAACGGTGTGAGCGTGGGGAGTGGAAGCCC
AAATTCCTTTCCCTTTTTTGTGGGAATAGTTTCCTTCATCGTCATTCTCA
TGACTGTTGTGGGTGGAAGTATACTTGCATACATGTATGTATCCCGCATC
ATGGTCACATAA

protein sequence of rna8048

>rna8048-protein ID=rna8048-protein|Name=rna8048|organism=Nannochloropsis gaditana|type=polypeptide|length=595bp
MPMRVDPEVVLARFQALLPALRRDTKVLRAFLTQYFTAPGSDLVEHVPPD
HSESPALLLSLADHAPYQRWAAELNHFWKQLCRKVSDDVFLNPQRYSILR
RTHPVVIPGGRFRESYYWDSYWIVLGLLACDMKDTARGLVQNLLDDVANF
GFVPNGGRIYYLNRSQPPLLSEMVLALVEHDPSGIDEAFVSEALAVLEGE
YRFWMQDGERAITVSPPPPIRASTQSQTWTSSSPSTSQQAEPPAQQHVLN
RYWTASIHPRPESFKEDLHHAGLADCAQGFYANIAAGAESGWDFSSRWIS
PCDKGEYALERITTTDIIPVDLNTFLYRMERNMARLHDYLLARQMGPGCG
TPEAKAEPPRETSCKVPPDSRESWVSPKAQKFAEASAKRALAIDQLMWDQ
ETGMWRDLWMPASGRGASNLFTAAHFAFGKVRPASNFLPLWGRVLDNPTL
CSVASRRKLAALDGLARSGLIVAGGVRTTNVETKEQWDCPNAWSPIVHMI
IDGLENLGAGDADRLARSLAKAWLESNYLGWASTGYMYEKYNGKVPGARG
EGGEYYPQVGFGWTNGVVLHLLKTYGQFLKHEAAAPPSTESPAEQ

mRNA from alignment at KK037247.1:431552..435410-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8048 ID=rna8048|Name=rna8048|organism=Nannochloropsis gaditana|type=mRNA|length=3859bp|location=Sequence derived from alignment at KK037247.1:431552..435410- (Nannochloropsis gaditana)
TGCTGGTGGGGGACTGACAACCCTGCGTGCGCTCCGGCGCCATGGAGATC
GGCCCTCTCGGCTGTGTCAACCCGAGGGCGCCCGTGCTCCAACGCTTTTC
ACGCTTCAAGTACAACGTACAAGACCAATGTGTCTGCTCCCCCAGGCGTA
TACTCACATATCAATATTGAAGATCAATTTAAAACATCGAGAGAGCTACA
TTTATCCGCCCACGTGCCCCGATTGGAAGGTCACGTAACCAAAGCAGCCA
GAGACCGCCATACCGCCAAGTACCGACGTCAACATCAAATCCTCCCCCTT
TTTTCCCTTCGCAAATCAGACGCAGACGATGTACCATGCGCTGGAAAAGC
GGGCGCGTTGCGATAGTTTTTGCTCTTAACCACAGCAAAGGGACCATTGC
TTTCAATATCCCACGGCGACCCATGGCGTCGTTCTTCGTGTGTGAGGTGA
GTCGTGTCCAAGAGATGAAACGGATCGCAGGGGAGTGGCAGGGGGACGTA
TAATCGTGTGGAAACGCAGGACAGCGTGCGCCACCTCCTGAGCAATCGTG
TGGGCGGGACGGGAGTGACCGTAAGCGTGTGGTGCTGAGTCGTGGTGGTG
TCACATGTTTCCTTGTACCCTTGCATTGATTAATTCGATGCGATTTTGAA
AGGAGCGTGCATTAGGTGTGGTATATATACTCTGGCTTGTAGCAAGCATA
CCTCTGTGTGAGGTGTTGGTGGCACAGATCCGGAATGGTGACCTTATTGA
CCATTAAAGCGCAACGTGCCGCATGCTGGACTGACAGACTTGGTATCCCC
ACCCCCGTACAGGCACCCCGTGCTGGCTGCATCGGCCGTCACATTTCCAT
TCCCTCTCGCGCGGCACGCAAACCTCCAGCTTGCCTCAGTGTTCGCAAGG
ACGCAGGTGCCGAGGAACAAGCAGGCGAAAGTCAGCCACACAAGCCTACA
CCTGAGACAGGATTGTCGAGCTCCTCAGAGCTGCATACGCGTCTTACCAC
CGCCAAAGCTATGGCAACTGTCCGAGTTGACGCCTTCCATGTCGCGTCCC
CGCCTTGCTCTCCTCGAGGAACCTTTGCAGGTGGCCCCCTTGCGAGGTCG
AGTCACCTGAGCGACTTGGTGGAGGAGGCCTCGGGGGGGGGGGGTTGGCT
GCTGCCGGCATAGGGAGCAAGGAGCCAGTTTCTGTCTTGGAAAAAGACGA
GGACACCTTGGCCGATGTGGAGCGTGCAGCCAAGGTCTATTGCCAGGGCG
AACTCCTGCACTTGGTCCAGACGGCCGGCATCTTCGAGGACTCCAAGGAG
TTCGTGGATATGCCCATGCGCGTCGACCCCGAGGTGGTCCTAGCGCGCTT
CCAAGCTCTCCTTCCCGCCCTCCGCCGCGATACCAAGGTCCTTCGCGCAT
TTCTTACCCAATATTTCACTGCGCCCGGTTCTGACCTGGTGGAGCACGTG
CCGCCAGACCACTCGGAATCACCGGCTCTTCTGCTTTCCCTCGCCGATCA
CGCCCCCTACCAACGGTGGGCGGCCGAGCTCAATCACTTTTGGAAGCAGC
TTTGTCGCAAGGTCTCCGATGACGTCTTCCTGAACCCGCAGCGGTACTCG
ATCCTGCGGCGCACGCACCCAGTGGTAATCCCTGGCGGGCGTTTCCGGGA
AAGCTACTACTGGGACTCGTACTGGATCGTCTTGGGGCTCTTGGCCTGCG
ATATGAAGGACACTGCCCGGGGCCTGGTGCAGAACTTGTTGGACGACGTG
GCCAACTTTGGCTTCGTGCCCAATGGCGGCCGTATCTACTACCTGAACCG
CTCCCAGCCCCCTTTGCTCTCGGAGATGGTGCTGGCCCTCGTGGAACACG
ACCCGAGTGGCATTGACGAGGCCTTCGTTTCCGAAGCCCTGGCCGTTCTG
GAAGGTGAATACCGTTTTTGGATGCAGGATGGGGAGCGCGCAATAACCGT
CAGCCCTCCTCCTCCAATACGGGCCTCCACCCAGTCTCAGACGTGGACCT
CGTCCTCGCCGAGCACTTCCCAGCAGGCAGAACCGCCCGCGCAGCAACAC
GTCCTCAATCGGTACTGGACGGCCTCCATCCATCCGCGGCCCGAGTCCTT
CAAGGAGGACCTGCACCACGCTGGGCTCGCAGACTGTGCCCAGGGCTTCT
ACGCCAACATTGCGGCTGGGGCGGAGTCAGGATGGGACTTTTCCTCTAGG
TGGATCTCCCCGTGCGATAAGGGAGAGTACGCGCTGGAACGCATCACCAC
CACTGACATCATTCCTGTGGACCTCAACACATTCCTCTACCGCATGGAGC
GCAACATGGCGCGCCTGCACGACTACCTCCTGGCCCGTCAAATGGGCCCG
GGCTGTGGGACTCCAGAAGCCAAAGCTGAGCCGCCCAGAGAAACAAGCTG
TAAGGTTCCACCAGACTCTCGGGAATCGTGGGTGTCACCGAAAGCTCAAA
AATTTGCCGAAGCCTCTGCCAAACGAGCCCTGGCTATAGATCAGCTCATG
TGGGATCAAGAGACGGGGATGTGGCGCGATTTGTGGATGCCTGCATCCGG
CAGAGGGGCCAGCAATCTTTTCACGGCGGCTCACTTTGCTTTCGGTAAGG
TTCGGCCAGCTAGCAACTTCCTACCCCTGTGGGGACGCGTGTTGGATAAT
CCAACCTTGTGCTCTGTGGCATCGAGGCGAAAGCTTGCGGCACTGGATGG
TTTAGCGCGTAGTGGCCTCATCGTCGCGGGGGGCGTGCGAACGACCAATG
TTGAGACTAAGGAGCAGTGGGACTGTCCGAACGCCTGGAGCCCCATTGTG
CACATGATTATCGATGGATTAGAAAATTTGGGCGCCGGCGACGCGGACCG
ACTGGCTCGGTCCCTGGCGAAAGCATGGCTGGAGAGCAACTACCTTGGAT
GGGCCTCAACGGGATACATGTACGAGAAGTACAATGGGAAGGTACCCGGA
GCGCGGGGGGAAGGCGGTGAATACTACCCTCAGGTAGGCTTTGGCTGGAC
GAACGGAGTCGTATTGCACTTGCTTAAAACCTACGGACAATTTCTCAAAC
ATGAGGCAGCTGCTCCTCCATCAACGGAGTCTCCTGCCGAACAGTAAGCC
AAAAAGTTGAATTTGCCTTAAAATATATCTAGAACCTGTCTATTGGCCTT
TTGTCACGTGAAAGGCGCGGGAGGGATGAAGACCTGAAAGAAACTAAAAA
CGATGAATTACGAGTGACTCTTGAAACCTTGAAGGCTCCAGGATTGTGAA
TGGGCAAGGTGCTATTGAAAATGCTGTCGACCTTCCCTTCGATTAGTTGT
TGCCATCAGCAAGCTGCTGAATCGCAGCGCTTATGTATAAATGAGAGTGG
TGCGTACATCTGACTGAGTGAAACGGATTTTTTGGACAAAAAAAGGACTA
GAAACAGCATTTTAGAAAGGTAGAAAGGTGAAGGTGAATGTTATTGGGAC
GATTACGTATACAAATCTCGTAAATGCGCCATCAAGTCAAAGAAATCGTA
GGACATTGAGCAACTTTTTCTATCTCCTTTCCATGGCATCAGTGCTAGGC
AAAGCTGTTTATGACGCTCGCGGCCTTTTCCTCGTCGCTTAGGCCATCCA
TATATATGCATAGAGGAGTAATATATGCGAATAAGCCCCTTGGAAAGCAC
ATGAAGGCCTTACGTAATCAGATCATGTACACAACATAATACCGAATTGG
CTCTTATGTGACCATGATGCGGGATACATACATGTATGCAAGTATACTTC
CACCCACAACAGTCATGAGAATGACGATGAAGGAAACTATTCCCACAAAA
AAGGGAAAGGAATTTGGGCTTCCACTCCCCACGCTCACACCGTTAAACAA
ATTCATACC

Coding sequence (CDS) from alignment at KK037247.1:431552..435410-

>rna8048 ID=rna8048|Name=rna8048|organism=Nannochloropsis gaditana|type=CDS|length=1788bp|location=Sequence derived from alignment at KK037247.1:431552..435410- (Nannochloropsis gaditana)
ATGCCCATGCGCGTCGACCCCGAGGTGGTCCTAGCGCGCTTCCAAGCTCT
CCTTCCCGCCCTCCGCCGCGATACCAAGGTCCTTCGCGCATTTCTTACCC
AATATTTCACTGCGCCCGGTTCTGACCTGGTGGAGCACGTGCCGCCAGAC
CACTCGGAATCACCGGCTCTTCTGCTTTCCCTCGCCGATCACGCCCCCTA
CCAACGGTGGGCGGCCGAGCTCAATCACTTTTGGAAGCAGCTTTGTCGCA
AGGTCTCCGATGACGTCTTCCTGAACCCGCAGCGGTACTCGATCCTGCGG
CGCACGCACCCAGTGGTAATCCCTGGCGGGCGTTTCCGGGAAAGCTACTA
CTGGGACTCGTACTGGATCGTCTTGGGGCTCTTGGCCTGCGATATGAAGG
ACACTGCCCGGGGCCTGGTGCAGAACTTGTTGGACGACGTGGCCAACTTT
GGCTTCGTGCCCAATGGCGGCCGTATCTACTACCTGAACCGCTCCCAGCC
CCCTTTGCTCTCGGAGATGGTGCTGGCCCTCGTGGAACACGACCCGAGTG
GCATTGACGAGGCCTTCGTTTCCGAAGCCCTGGCCGTTCTGGAAGGTGAA
TACCGTTTTTGGATGCAGGATGGGGAGCGCGCAATAACCGTCAGCCCTCC
TCCTCCAATACGGGCCTCCACCCAGTCTCAGACGTGGACCTCGTCCTCGC
CGAGCACTTCCCAGCAGGCAGAACCGCCCGCGCAGCAACACGTCCTCAAT
CGGTACTGGACGGCCTCCATCCATCCGCGGCCCGAGTCCTTCAAGGAGGA
CCTGCACCACGCTGGGCTCGCAGACTGTGCCCAGGGCTTCTACGCCAACA
TTGCGGCTGGGGCGGAGTCAGGATGGGACTTTTCCTCTAGGTGGATCTCC
CCGTGCGATAAGGGAGAGTACGCGCTGGAACGCATCACCACCACTGACAT
CATTCCTGTGGACCTCAACACATTCCTCTACCGCATGGAGCGCAACATGG
CGCGCCTGCACGACTACCTCCTGGCCCGTCAAATGGGCCCGGGCTGTGGG
ACTCCAGAAGCCAAAGCTGAGCCGCCCAGAGAAACAAGCTGTAAGGTTCC
ACCAGACTCTCGGGAATCGTGGGTGTCACCGAAAGCTCAAAAATTTGCCG
AAGCCTCTGCCAAACGAGCCCTGGCTATAGATCAGCTCATGTGGGATCAA
GAGACGGGGATGTGGCGCGATTTGTGGATGCCTGCATCCGGCAGAGGGGC
CAGCAATCTTTTCACGGCGGCTCACTTTGCTTTCGGTAAGGTTCGGCCAG
CTAGCAACTTCCTACCCCTGTGGGGACGCGTGTTGGATAATCCAACCTTG
TGCTCTGTGGCATCGAGGCGAAAGCTTGCGGCACTGGATGGTTTAGCGCG
TAGTGGCCTCATCGTCGCGGGGGGCGTGCGAACGACCAATGTTGAGACTA
AGGAGCAGTGGGACTGTCCGAACGCCTGGAGCCCCATTGTGCACATGATT
ATCGATGGATTAGAAAATTTGGGCGCCGGCGACGCGGACCGACTGGCTCG
GTCCCTGGCGAAAGCATGGCTGGAGAGCAACTACCTTGGATGGGCCTCAA
CGGGATACATGTACGAGAAGTACAATGGGAAGGTACCCGGAGCGCGGGGG
GAAGGCGGTGAATACTACCCTCAGGTAGGCTTTGGCTGGACGAACGGAGT
CGTATTGCACTTGCTTAAAACCTACGGACAATTTCTCAAACATGAGGCAG
CTGCTCCTCCATCAACGGAGTCTCCTGCCGAACAGTAA

Synonyms

Publications