rna8047, rna8047 (mRNA) Nannochloropsis gaditana

Overview
Namerna8047
Unique Namerna8047
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1434
Alignment locationKK037247.1:430796..431707 +

Link to JBrowse

Properties
Property NameValue
Productmetal ion transporter family
Orig transcript idgnl|cribi|Naga_100023g35.3958.mrna
Orig protein idgnl|cribi|Naga_100023g35.3958
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:430796..431707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100023g35gene7791Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8047rna8047-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22642.1cds8025Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8047 ID=rna8047|Name=rna8047|organism=Nannochloropsis gaditana|type=mRNA|length=1434bp
GCACGCGACGTTCCTTGGCGCAAGTTCAGATTATCAACTTTGTGCACCCA
TACAATCAGCTTCATAGGAAGTGCGCGTCCAATCGATGCTCTAAATGCTC
ACATCGTCGTGTGTGTATTTAGTAGTCTGGCGTCGGTATTCGATGTACCA
AAGAGCAAGACAACAAAATATGTGGGAGTTTGTCCAGCGGTTCACTCTCG
TATTACTTATTGTTCATTTAAATCGGGACAGAAGTGGAACTCTTCACATA
GTGTTATGTGTCTGGTATTATTCACGGATGCTGCAAAATCAAACTGTACC
CGCAAGTTCTGAATTTGCACTTAATGTTTTACTTGTTGATAAGAACTACG
TCAACATAACTACTATACGCCATTTTGTAATCTGTAAACCAACTATGCGC
TCATTTTGCACTCAGCATTTGTCATAGTGGAGATTCAAGTACAGTGCCTG
ACATCACGAACGGGTCAATAAAAAAGCATCGTACCATTTAAAAAAAGCAA
CGTACCATACTCATTCAATCAAATTATGAATATTTTTAGGTCTACATGCT
TTTATGCCAAGCGTATTCCAAACTATCCAAATCTCTCATCTTCCAAGGTC
ACTCAGTACCACGCGTGCACAGTTCCGACCGGGTGCCCCCATAACGCCGC
CCCCAGGATGAGTCCCAGCGCCACATAGATACAGTCCCGGGAGAGGAGTC
CGATAAGATGGACGGGCGTAAGCTAGCTGGTGGAGGCTTAGACTACCATG
GAAGATATTACCACCATGCAAACCAAATACTCGCTCCAAATCTAACGGTG
AAAGCAAGTCGTAACCCAGTATGGAAGTGGAAAAGCCGGGAGCTTTTTCG
TCTATGATTTGGAAAACCCTGCGCGCGAATGCCGCTTTGAAGTTTTCGTC
CTTCCAACTTCCCACCTTTGAATCCAGAGCGTAAGGAGCGTATTGCACAA
ATAAAGAAGCGACATGCTTGCCAGGTGGGGCAAGAGTGCTGTCCAGCACC
GAGGGGATCGTCATCTCGATAACTGGTCGGGAACTTGGCCGTCGATTCAC
ATATGCCTCCAAATATGCATCTTCGATCTCCTGCACATTGTTTTCAAAGT
GGATTGTGCCGCGATGTTGGGGACCTGCCATTCCCGCGTCGACAGATGGA
CAGCAAATGAAATTAGGGAGGCGATCTAATGCCAGATTTATTTTGAATAC
CCCAGAGGAATAATCAATATGCTTGATGCGTGTGAGGAGGTCGCGCGGCA
AAGACTCGCGAGCCACGTTACTGGGAAGAAGCTCAAGAAAGGTGTGATAG
GGTGTCCCATTTGAAAGAACCACGGATGCTTCTAGCCTACATTTATGATA
GGTGAGGGACAAGCAATGCTCATAAGCTGTCGATGAAGTCTTGACAGAAC
GCTCCGAAAGAAATACTCTTACCGCGTGCCGTCC
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protein sequence of rna8047

>rna8047-protein ID=rna8047-protein|Name=rna8047|organism=Nannochloropsis gaditana|type=polypeptide|length=303bp
MDIDLNGVEEEEFEFLALEAVLMTINDHFKSKLKDLRPHIIKNGKALLGN
ATLNSEHQDTLRQLKSKVTTCQAKVRSLHKTVVDLLDDEEHLQMLHLTRT
QSQQQQQQQQQQQHQKQEDQKPNLASAQKNEYHQQQEWRFRDTHETAMLG
SFEGGRTRGRGCSIGGETDQQLAGVLMDAEDSDEAEILLESFLGDFNEMI
MKWELIKEDMQNTENYVQVKLDMARNKLLTIGTLFALVNVCFAFGALISG
IFGMNLFNGVSVGSGSPNSFPFFVGIVSFIVILMTVVGGSILAYMYVSRI
MVT
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mRNA from alignment at KK037247.1:430796..431707+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8047 ID=rna8047|Name=rna8047|organism=Nannochloropsis gaditana|type=mRNA|length=912bp|location=Sequence derived from alignment at KK037247.1:430796..431707+ (Nannochloropsis gaditana)
ATGGACATTGACTTGAATGgcgtcgaagaagaagaattTGAGTTTTTGGC
CTTAGAGGCAGTTCTCATGACTATTAACGATCATTTCAAGAGCAAATTGA
AAGATCTGCGCCCTCACATAATCAAAAACGGGAAAGCCCTGCTTGGAAAC
GCTACTCTGAACAGCGAACACCAAGACACGCTTCGCCAGCTCAAAAGCAA
GGTTACTACATGTCAAGCAAAAGTGCGTTCGCTGCACAAAACAGTGGTTG
ACCTTTTAGATGACGAAGAGCATCTGCAGATGCTTCACTTGACCCGCACC
CAGAgtcagcaacagcaacaacagcaacaacagcaacagcatcaGAAACA
AGAAGATCAGAAACCAAACTTAGCCTCCGCACAAAAGAACGAGTATCATC
AACAGCAAGAATGGCGTTTTCGAGACACACACGAAACTGCCATGCTTGGC
AGCTTTGAAGGCGgcaggacaaggggaagaggctgCTCAATTGGTGGCGA
AACCGACCAACAGCTAGCTGGCGTGCTCATGGATGCGGAAGATAGCGACG
AGGCAGAAATTTTGCTGGAGTCCTTCTTGGGCGACTTTAATGAAATGATC
ATGAAATGGGAGCTTATTAAGGAGGACATGCAGAACACTGAGAACTACGT
GCAAGTCAAGCTCGACATGGCCCGCAACAAGCTGCTTACGATCGGCACAC
TCTTTGCACTCGTCAACGTTTGTTTCGCGTTTGGCGCCTTGATATCGGGA
ATATTTGGTATGAATTTGTTTAACGGTGTGAGCGTGGGGAGTGGAAGCCC
AaattcctttcccttttttgtGGGAATAGTTTCCTTCATCGTCATTCTCA
TGACTGTTGTGGGTGGAAGTATACTTGCATACATGTATGTATCCCGCATC
ATGGTCACATAA
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Coding sequence (CDS) from alignment at KK037247.1:430796..431707+

>rna8047 ID=rna8047|Name=rna8047|organism=Nannochloropsis gaditana|type=CDS|length=912bp|location=Sequence derived from alignment at KK037247.1:430796..431707+ (Nannochloropsis gaditana)
ATGGACATTGACTTGAATGgcgtcgaagaagaagaattTGAGTTTTTGGC
CTTAGAGGCAGTTCTCATGACTATTAACGATCATTTCAAGAGCAAATTGA
AAGATCTGCGCCCTCACATAATCAAAAACGGGAAAGCCCTGCTTGGAAAC
GCTACTCTGAACAGCGAACACCAAGACACGCTTCGCCAGCTCAAAAGCAA
GGTTACTACATGTCAAGCAAAAGTGCGTTCGCTGCACAAAACAGTGGTTG
ACCTTTTAGATGACGAAGAGCATCTGCAGATGCTTCACTTGACCCGCACC
CAGAgtcagcaacagcaacaacagcaacaacagcaacagcatcaGAAACA
AGAAGATCAGAAACCAAACTTAGCCTCCGCACAAAAGAACGAGTATCATC
AACAGCAAGAATGGCGTTTTCGAGACACACACGAAACTGCCATGCTTGGC
AGCTTTGAAGGCGgcaggacaaggggaagaggctgCTCAATTGGTGGCGA
AACCGACCAACAGCTAGCTGGCGTGCTCATGGATGCGGAAGATAGCGACG
AGGCAGAAATTTTGCTGGAGTCCTTCTTGGGCGACTTTAATGAAATGATC
ATGAAATGGGAGCTTATTAAGGAGGACATGCAGAACACTGAGAACTACGT
GCAAGTCAAGCTCGACATGGCCCGCAACAAGCTGCTTACGATCGGCACAC
TCTTTGCACTCGTCAACGTTTGTTTCGCGTTTGGCGCCTTGATATCGGGA
ATATTTGGTATGAATTTGTTTAACGGTGTGAGCGTGGGGAGTGGAAGCCC
AaattcctttcccttttttgtGGGAATAGTTTCCTTCATCGTCATTCTCA
TGACTGTTGTGGGTGGAAGTATACTTGCATACATGTATGTATCCCGCATC
ATGGTCACATAA
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Synonyms
Publications