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Properties
| Property Name | Value |
|---|
| Product | Proteasome, beta-type subunit, conserved site |
| Orig transcript id | gnl|cribi|Naga_100023g30.3961.mrna |
| Orig protein id | gnl|cribi|Naga_100023g30.3961 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037247.1 | supercontig | KK037247.1:422658..423900 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8042 ID=rna8042|Name=rna8042|organism=Nannochloropsis gaditana|type=mRNA|length=3367bp
TACAGGCGAGCTTCAGGGGATACGTCGGAAGGTGCTAAAAACAGGGTGCC
TTTTTAGGTGTCCTATGGCGGACCGCTTTTTCGAGGCCGGGCTGGACTCC
TTGGAGCTTGAAGAGTCGGAATTATATAATGGTTTGGAGACCAGTGTAGC
AAGCTCACAATTGACTGACTTTTTGGTCCAGCACGGTGTCCTATCGCCGT
CGCGGGCCGGGAAGGAAGGCGTGGACGCGCCCCCATCACCGCCATCCTCG
CCGCTGCAGGCCCAGGCCCCGACACATTCATTGCCGTCGTCCCCGCAACG
GACACAGCCCGCCTCCTTCCCCGGTGTGATCGCGCACACCCCGGAGAAAA
GACATTCGACGAGATCTCTTCAAGGCGCGGATGGCAGCAGTCATGAGGAA
AACTTTCGATCGCAGGGGCACAAACAAGACATTTTGAATCAAACACCGCG
CAGCGGTATCTCCAGCTTAGGGCTGACCTCCCCTCCACGCCATCCCTATC
AGCCAATCCGCCAGGGCACTGGAGGCGAGGCCCTCCCAGCGCCACGGCGA
TCTTGGGACACCCCAGCCGCTCCCGGGGGCCCTGGGTCTTTGATCCCTCC
CTCCCCGTTCCCGCCCTCAACGTTTTCTTCGTGGGAGGCAGTCAATCGTC
TCTTGCGGCAGGAAGGTTATCGGTCTGTGAGCGGGCGGGACGAGCCCGGA
GAGGTGTTGGGGGTGCTCAGGCAGCTCATCCGAGACCGCCGGGAGATGGG
GGAGCTGCTCAAGACCTATCAGTTGGAGCGGCAACGACAAGACAGCGAGC
AGCGCCTGGTAGAGGGCCGGCTCGAAGGTGTGGAGCGTTCGAAAGGCGAC
TTGCGGGAGATGCTGCAGGCGGCAGAGCAGCGAGCCAGGGTGCTGGCGGG
CGACGTGGAGAGAGCCAAGAAAGAGGGAGCCGAGCAGCTTCGTGAGTCCA
AGGCCAAGTGCGCGCATTTGCTCGCAAAGCTGCGGCAGTCAGAACATCGT
GTGAAAACGCGGGAGGCACACATAGACAAAATCAACAGCAAGTTGGAAGC
GCTGATTGCGAGGGAGGCCAAAGAGAGAGAGCAACAGAAAGAGGTCCTTC
GCCGGCTCAATCCCGGAAAGCTTGCGCCGAAAGACGGGAAAGTGGCAGAG
ATAATCGGGGCCCTGGAGGCGGCGAGGCAACGGGCATCCGGGGAAGCGAG
GGCTCTGAAAGCAGAGATGTCTTTCTTGAATGACATGCTGAAAGAGAAGG
AGAATTACATAGCTCGCAGAGAATGTAGTGGGGCTTGGACGGCGCTTCCT
GAGGGAAAGAACATGATCCTACCGAGCCAGAAGACAGGCGCGTCCGCCGC
GTATCGCATGCACTGCAATAGGCGCGAAGAGAGCCCCGACAAGGGCGGGA
TCGGGTCCGGTATGCAGCATCTGTTGGAGCAAGTTCAGGGGCTTGAACGG
GCCCTGCGTCACGCCGATAGGCGGGAGCAAAGCCTCAAGCAAAAGGTGTC
GGACCTGGAGGAGGCCAAGGCGGGGCTACAGACGACAGGGATGCGCACGG
AGGCAGAGATCGATAGTCTGAAAAAAGACCTGAAAAACCGGCCGACGCTG
ACGGAGTGGAATGCAACCCAGAAACAAAGAAAGGATCTGGAGGCCCGCCT
GAAAAATGCTCTACAAGAGTTGAGAGAGTCACAGTCAAAGGCACCTTTGT
CGACAGTGGCCCGTGCGAGCAATGGAGGCTCGAAACAGCACAAGGCACAG
CAAGAGAAAGCGCTATCTGAGATCTGCCGCCTGCTGCAGGTGCAAGAACT
CGCCCAGGTCGTACCGGCAGTTGCGCGAATGGGCGAGGCCATGGCTGCCA
TTCCCCTGCTGGAGACTTTCGTCAAAAATGTCTGTGGCTTTCTTGCGAGA
TCGACGCTGCCCAATGGTCAGCATCTCTCGCCCGAGGAGGCTCTTCGCCG
CATGCCTATGGCCGACGCTATGGACGCGCTCCGTGACTGGGCCAAAGAAA
TGCAGGACATTCGTCAGCTCCAGCGTCTGCGGTCCCGTCTTGGCACCATC
TTATGCAATCGGGACGGCAAGGGCACTTTTCCAAGAAAGGACGATGCCGG
TGGAGTGGAAGACAGGAAGGAGAGCATGCCCGACGACGAAACGCTCCTCG
GGGAGGTGGCCGCCTTGATAGCCCTCGAACACGACGTCTCGGCCTCTCGC
CATGGAAAAGAACAGGTGGAAGGGTACTTGGCGGCGCGGCCCGACATTCT
CGTGAATCGAGTGGTCCAGCATTTCCAGCAACTGTTCCAGGTCAAGTCCC
TGGAAGGGCTCTTTCCCAAGATGAACGAACTCTACCTCTTCACCTCGGAG
ATGGCCGTCTTCACTCGCGTCCTCAAATCTATGCTCCGCCTCGCCCCTAC
CTGTCCAAACAATACGTTGCTGATTGCCTTGCAGAAGGCGATCCGCCAGG
CCCGCGGCAAGCGGACTAAAGGGGCTCGGACGCAGCCTCGAGTCTCACGC
GCATCCGTGCTGGAGGGCGTCCCCGAGGAGGGAGAGAGTGAAGATGACCA
AGAGGAGGACGTAGAGGGCAAGGGCGTGGAAAGTGGTGTTTTTTTCGACC
GCTCAGTAGGTCGGCAGGAGGTTGTGGAGGACGAGGTGCGCAGCGGTAAC
CGAGAAGGGAAGGAGGACGGCGACTCCGTCAACGACGCTTCTCCACTGTC
CGACGGACTGAGCAACGCCGATGGATACATCTATAGTCACGTCATGAATC
CGAGTGGAGATGACTTGGGACAGAGCAAGAGTGACGCTGAAAGGGAAGAG
GAGATGAGTGTCTTCTCAAGAGCGACTTCAGTGATTTCCGAGTCGACCGC
GTCGGTTTCCTCTTCCACCTCTGCTGCTTCTTCCACGCGGCCTGGCGATC
AATTTGATGTGAGCAGCTTCGATAAGTCATCCATAGTGGATTTCCGTCTG
CTCGGCGTCTTGAGCGCGGCAGAGTCTCGCAGTCGGGACTCGCCTCTTCC
TCCACCGCGTGGCCCCCCCGACGCTCCTTCGCAACGTTCTTCCAATGTGT
TGACATCCTCGTTTGCATCATCGACTTCTTGGACTAGGCCACTTCCTGGT
AAAATTCACAGTAGATCAACGGGGGGAAGTACAGCTATGAGTGAACGCAT
TTCCCATGGGCTTTCCTCGTCCGCCGCCTCAGGCCTCCTGAATGTCTTGT
CGTTTGCAGAAAGCGGAAATGTAGCCGCCTTCCCAACGCCGGCGAAGGCA
GAAATCGTCGTTGAAGCTCGTAATAGTCGATCTTTCACCTCTTCGATGTA
AAAGAAAAAGTAAACGCTTTATAAACATGTCATGTTTCATGAATCAATCG
TTTGTAATTCCTCAACC back to topprotein sequence of rna8042 >rna8042-protein ID=rna8042-protein|Name=rna8042|organism=Nannochloropsis gaditana|type=polypeptide|length=321bp
MTQEVLRVLAGFSALGDKYRKMFGNFCVPQFLFLGLIRVAWTHSSQPWTY
SMPPNALDDGPRLPIPGFCRDGERPAGYFRTTSGDFYGSSLEKFLPTRRA
QPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIE
ISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNR
LYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELI
QPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVH
IVIMQKGKLEPRMESFALPRH back to topmRNA from alignment at KK037247.1:422658..423900+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8042 ID=rna8042|Name=rna8042|organism=Nannochloropsis gaditana|type=mRNA|length=1243bp|location=Sequence derived from alignment at KK037247.1:422658..423900+ (Nannochloropsis gaditana)
ATGACACAGGAGGTTTTGCGGGTTCTAGCAGGTTTCAGCGCCCTGGGAGA
TAAGTACCGGAAAATGTTCGGGAATTTCTGTGTTCCCCaatttctctttc
ttggGCTGATTCGAGTAGCTTGGACTCACTCGTCACAGCCGTGGACGTAC
TCAATGCCACCAAATGCGCTTGACGATGGGCCCCGGTTGCCGATCCCCGG
CTTCTGTAGAGACGGCGAGAGGCCTGCCGGCTATTTCAGGACGACATCAG
GAGATTTTTATGGCTCATCACTCGAGAAGTTTCTTCCCACGCGTCGCGCA
CAACCTTATCAATGGGCTCCTGacatggtggaggacaaCGGTGGGACAGT
CGTAGCTGTGGCAGGACCAGACTACTGTATTGTAGCTGCTGATACGCGGT
TGAGCTCAGACTATCGAATCCGCACGCGTAACGTCAGCCGATTAATCGAA
ATTTCTCCTTGCACATTTGTGGGAATGGCTGGAAGCTGGGCGGACGTGAC
TACACTACGGCATGAGGTAAAGGGGCAATGATTctgtggggaaggaaggg
tgagTCCGAGCTGAACCATGTCGCCTCACACTTTGACCTGCTCACAGTTG
GCCTATGACTTGAGCTGCTTCGAGGCAAAGCACGGGGGTGCCATCGGTAC
TGCGGCCCTCGCCACCTTTCTGTCCAACCGTCTCTACATGCACCGGCTAC
AGCCCGTTTACGCTCTGAACCTGGTGGCCGGTTTGAACGCATTAGGTGAG
ACGAGGACAGATGCTGACTCTATGTCTTATACTCCATCGTGCATGACATT
CTCTGGAACTTAGATTTAAAAGCACTGCATCCTTCCCAAAGGCCAGGGGG
CTGTCTACAGCTACGACGTGATCGGCTCCTTCAATCGAGTGCCGGCAGCA
TGCTGCGGTAGAGGCCAGGTATGCATGATGCCTTGCCTTCCGTGCCCCCA
TTCATGATTCTACTCAGCTTCTACGTTTTCCTGCCTGTTTTTTCTTTCGT
TTTCCTTGTCCCGCTCAGGAGCTGATACAGCCGGTTTTAGATCAATTTAT
GGCACAAGACGGTAACAAATTGAACAGTAATAACGCACCCTTGTCTTGCG
AAGAAGCCTTTCAGGTGGTCAAAAATGCATTTTTGTCCGGAGCCGAAAGA
GAAATTAGCATTGGAGATGGTGTACATATTGTGATAATGCAAAAAGGAAA
GTTGGAGCCTAGAATGGAGAGCTTCGCTTTGCCTCGGCACTAG back to topCoding sequence (CDS) from alignment at KK037247.1:422658..423900+ >rna8042 ID=rna8042|Name=rna8042|organism=Nannochloropsis gaditana|type=CDS|length=3864bp|location=Sequence derived from alignment at KK037247.1:422658..423900+ (Nannochloropsis gaditana)
ATGACACAGGAGGTTTTGCGGGTTCTAGCAGGTTTCAGCGCCCTGGGAGA
TAAGTACCGGAAAATGTTCGGGAATTTCTGTGTTCCCCaatttctctttc
ttggGCTGATTCGAGTAGCTTGGACTCACTCGTCACAGCCGTGGACGTAC
TCAATGCCACCAAATGCGCTTGACGATGGGCCCCGGTTGCCGATCCCCGG
CTTCTGTAGAGACGGCGAGAGGCCTGCCGGCTATTTCAGGACGACATCAG
GAGATTTTTATGGCTCATCACTCGAGAAGTTTCTTCCCACGCGTCGCGCA
CAACCTTATCAATGGGCTCCTGacatggtggaggacaaCGGTGGGACAGT
CGTAGCTGTGGCAGGACCAGACTACTGTATTGTAGCTGCTGATACGCGGT
TGAGCTCAGACTATCGAATCCGCACGCGTAACGTCAGCCGATTAATCGAA
ATTTCTCCTTGCACATTTGTGGGAATGGCTGGAAGCTGGGCGGACGTGAC
TACACTACGGCATGAGTTGGCCTATGACTTGAGCTGCTTCGAGGCAAAGC
ACGGGGGTGCCATCGGTACTGCGGCCCTCGCCACCTTTCTGTCCAACCGT
CTCTACATGCACCGGCTACAGCCCGTTTACGCTCTGAACCTGGTGGCCGG
TTTGAACGCATTAGGCCAGGGGGCTGTCTACAGCTACGACGTGATCGGCT
CCTTCAATCGAGTGCCGGCAGCATGCTGCGGTAGAGGCCAGGAGCTGATA
CAGCCGGTTTTAGATCAATTTATGGCACAAGACGGTAACAAATTGAACAG
TAATAACGCACCCTTGTCTTGCGAAGAAGCCTTTCAGGTGGTCAAAAATG
CATTTTTGTCCGGAGCCGAAAGAGAAATTAGCATTGGAGATGGTGTACAT
ATTGTGATAATGCAAAAAGGAAAGTTGGAGCCTAGAATGGAGAGCTTCGC
TTTGCCTCGGCACTAGATGACACAGGAGGTTTTGCGGGTTCTAGCAGGTT
TCAGCGCCCTGGGAGATAAGTACCGGAAAATGTTCGGGAATTTCTGTGTT
CCCCaatttctctttcttggGCTGATTCGAGTAGCTTGGACTCACTCGTC
ACAGCCGTGGACGTACTCAATGCCACCAAATGCGCTTGACGATGGGCCCC
GGTTGCCGATCCCCGGCTTCTGTAGAGACGGCGAGAGGCCTGCCGGCTAT
TTCAGGACGACATCAGGAGATTTTTATGGCTCATCACTCGAGAAGTTTCT
TCCCACGCGTCGCGCACAACCTTATCAATGGGCTCCTGacatggtggagg
acaaCGGTGGGACAGTCGTAGCTGTGGCAGGACCAGACTACTGTATTGTA
GCTGCTGATACGCGGTTGAGCTCAGACTATCGAATCCGCACGCGTAACGT
CAGCCGATTAATCGAAATTTCTCCTTGCACATTTGTGGGAATGGCTGGAA
GCTGGGCGGACGTGACTACACTACGGCATGAGTTGGCCTATGACTTGAGC
TGCTTCGAGGCAAAGCACGGGGGTGCCATCGGTACTGCGGCCCTCGCCAC
CTTTCTGTCCAACCGTCTCTACATGCACCGGCTACAGCCCGTTTACGCTC
TGAACCTGGTGGCCGGTTTGAACGCATTAGGCCAGGGGGCTGTCTACAGC
TACGACGTGATCGGCTCCTTCAATCGAGTGCCGGCAGCATGCTGCGGTAG
AGGCCAGGAGCTGATACAGCCGGTTTTAGATCAATTTATGGCACAAGACG
GTAACAAATTGAACAGTAATAACGCACCCTTGTCTTGCGAAGAAGCCTTT
CAGGTGGTCAAAAATGCATTTTTGTCCGGAGCCGAAAGAGAAATTAGCAT
TGGAGATGGTGTACATATTGTGATAATGCAAAAAGGAAAGTTGGAGCCTA
GAATGGAGAGCTTCGCTTTGCCTCGGCACTAGATGACACAGGAGGTTTTG
CGGGTTCTAGCAGGTTTCAGCGCCCTGGGAGATAAGTACCGGAAAATGTT
CGGGAATTTCTGTGTTCCCCaatttctctttcttggGCTGATTCGAGTAG
CTTGGACTCACTCGTCACAGCCGTGGACGTACTCAATGCCACCAAATGCG
CTTGACGATGGGCCCCGGTTGCCGATCCCCGGCTTCTGTAGAGACGGCGA
GAGGCCTGCCGGCTATTTCAGGACGACATCAGGAGATTTTTATGGCTCAT
CACTCGAGAAGTTTCTTCCCACGCGTCGCGCACAACCTTATCAATGGGCT
CCTGacatggtggaggacaaCGGTGGGACAGTCGTAGCTGTGGCAGGACC
AGACTACTGTATTGTAGCTGCTGATACGCGGTTGAGCTCAGACTATCGAA
TCCGCACGCGTAACGTCAGCCGATTAATCGAAATTTCTCCTTGCACATTT
GTGGGAATGGCTGGAAGCTGGGCGGACGTGACTACACTACGGCATGAGTT
GGCCTATGACTTGAGCTGCTTCGAGGCAAAGCACGGGGGTGCCATCGGTA
CTGCGGCCCTCGCCACCTTTCTGTCCAACCGTCTCTACATGCACCGGCTA
CAGCCCGTTTACGCTCTGAACCTGGTGGCCGGTTTGAACGCATTAGGCCA
GGGGGCTGTCTACAGCTACGACGTGATCGGCTCCTTCAATCGAGTGCCGG
CAGCATGCTGCGGTAGAGGCCAGGAGCTGATACAGCCGGTTTTAGATCAA
TTTATGGCACAAGACGGTAACAAATTGAACAGTAATAACGCACCCTTGTC
TTGCGAAGAAGCCTTTCAGGTGGTCAAAAATGCATTTTTGTCCGGAGCCG
AAAGAGAAATTAGCATTGGAGATGGTGTACATATTGTGATAATGCAAAAA
GGAAAGTTGGAGCCTAGAATGGAGAGCTTCGCTTTGCCTCGGCACTAGAT
GACACAGGAGGTTTTGCGGGTTCTAGCAGGTTTCAGCGCCCTGGGAGATA
AGTACCGGAAAATGTTCGGGAATTTCTGTGTTCCCCaatttctctttctt
ggGCTGATTCGAGTAGCTTGGACTCACTCGTCACAGCCGTGGACGTACTC
AATGCCACCAAATGCGCTTGACGATGGGCCCCGGTTGCCGATCCCCGGCT
TCTGTAGAGACGGCGAGAGGCCTGCCGGCTATTTCAGGACGACATCAGGA
GATTTTTATGGCTCATCACTCGAGAAGTTTCTTCCCACGCGTCGCGCACA
ACCTTATCAATGGGCTCCTGacatggtggaggacaaCGGTGGGACAGTCG
TAGCTGTGGCAGGACCAGACTACTGTATTGTAGCTGCTGATACGCGGTTG
AGCTCAGACTATCGAATCCGCACGCGTAACGTCAGCCGATTAATCGAAAT
TTCTCCTTGCACATTTGTGGGAATGGCTGGAAGCTGGGCGGACGTGACTA
CACTACGGCATGAGTTGGCCTATGACTTGAGCTGCTTCGAGGCAAAGCAC
GGGGGTGCCATCGGTACTGCGGCCCTCGCCACCTTTCTGTCCAACCGTCT
CTACATGCACCGGCTACAGCCCGTTTACGCTCTGAACCTGGTGGCCGGTT
TGAACGCATTAGGCCAGGGGGCTGTCTACAGCTACGACGTGATCGGCTCC
TTCAATCGAGTGCCGGCAGCATGCTGCGGTAGAGGCCAGGAGCTGATACA
GCCGGTTTTAGATCAATTTATGGCACAAGACGGTAACAAATTGAACAGTA
ATAACGCACCCTTGTCTTGCGAAGAAGCCTTTCAGGTGGTCAAAAATGCA
TTTTTGTCCGGAGCCGAAAGAGAAATTAGCATTGGAGATGGTGTACATAT
TGTGATAATGCAAAAAGGAAAGTTGGAGCCTAGAATGGAGAGCTTCGCTT
TGCCTCGGCACTAG back to top
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