EWM22645.1, cds8020 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|585103210|gb|EWM22645.1| (Proteasome, beta-type subunit, conserved site [Nannochloropsis gaditana]) HSP 1 Score: 669.078 bits (1725), Expect = 0.000e+0 Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0 Query: 1 MTQEVLRVLAGFSALGDKYRKMFGNFCVPQFLFLGLIRVAWTHSSQPWTYSMPPNALDDGPRLPIPGFCRDGERPAGYFRTTSGDFYGSSLEKFLPTRRAQPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPRMESFALPRH 321 MTQEVLRVLAGFSALGDKYRKMFGNFCVPQFLFLGLIRVAWTHSSQPWTYSMPPNALDDGPRLPIPGFCRDGERPAGYFRTTSGDFYGSSLEKFLPTRRAQPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPRMESFALPRH Sbjct: 1 MTQEVLRVLAGFSALGDKYRKMFGNFCVPQFLFLGLIRVAWTHSSQPWTYSMPPNALDDGPRLPIPGFCRDGERPAGYFRTTSGDFYGSSLEKFLPTRRAQPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPRMESFALPRH 321
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|223993685|ref|XP_002286526.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977841|gb|EED96167.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 175.637 bits (444), Expect = 1.714e-49 Identity = 98/252 (38.89%), Postives = 147/252 (58.33%), Query Frame = 0 Query: 71 DGERPAGYFRTTSGDFYGSSLEKFLP----TRRAQPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPRMESFAL 318 DG+ + + T+ D GS+++ + RR PY++ NGGT +A++GPDY +VAADTRLSS Y I +RNVS+L ++ +G AG DV LR L + + H A+ T ++A L N LYM R P Y+ N++AG+++ G+GAVYSYD IGSF R P + G GQ + P++D ++ N+L+ L EE ++VK+AFL+ ER+I GD V I+++ +E E+F L Sbjct: 37 DGQNLSLSQQPTALDIDGSNIDHGITQSPWERRFSPYEF-------NGGTTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTEKCVLGSAGCKTDVDQLRSVLDIKMKVYAHNHRKAMATPSVAQMLGNTLYMKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQAFLIPLMDNVISHK-NRLDQKR-ELGSEEVVEIVKDAFLTAGERDIYTGDAVEIMVITAKGIES--ETFKL 277
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|612399936|ref|XP_007515487.1| (predicted protein [Bathycoccus prasinos] >gi|412993855|emb|CCO14366.1| predicted protein [Bathycoccus prasinos]) HSP 1 Score: 171.4 bits (433), Expect = 2.172e-48 Identity = 97/228 (42.54%), Postives = 132/228 (57.89%), Query Frame = 0 Query: 101 QPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLN----------SNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPRMESFAL 318 Q W+P ++NGGTV+AVAG DY I AADTR+S+ Y I TR +++ E+SP T + AG AD TL+ L ++ + IG A A LSN LYM R P YA N+VAGL+A G+GAV++YD +GS+ R +C G GQ+LI PVLD N+L S+ PLS EEA ++K+ F + ER+I GD V + +M K + R E+ L Sbjct: 24 QHATWSP--YDNNGGTVMAVAGEDYVICAADTRMSTGYSIMTRQYTKVDEMSPKTLMASAGFMADAATLKKLLKGRCDQYQFANNKPIGCVAFAQMLSNTLYMRRFFPYYAFNIVAGLDAEGKGAVFTYDAVGSYERTNYSCQGSGQQLIMPVLD-------NQLKTVSPLVLPAVSSATPLSEEEAIDLIKDCFATAGERDIYTGDAVELFVMNKDGI--RKETMPL 240
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|299116145|emb|CBN76052.1| (proteasome beta subunit [Ectocarpus siliculosus]) HSP 1 Score: 170.244 bits (430), Expect = 6.795e-48 Identity = 95/219 (43.38%), Postives = 125/219 (57.08%), Query Frame = 0 Query: 112 DNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNN---------APLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPRMESFALPRH 321 +NGGTVVAVAGPDYCI+AAD+RLS Y I +RNV+R+ +S T + AG WAD L L Y + +E + +GT A++ LS LY R P Y N+V GL+ G GAVY YD +GSF RV AC G G L+QPVLD+ A + + EEA +V+ AF++G ER+IS+GD V IV++ + R E L H Sbjct: 33 NNGGTVVAVAGPDYCIIAADSRLSDGYTILSRNVTRVHRLSGDTHLATAGCWADTQGLLRLLEYLIRDYEMEQRRTMGTKAVSRMLSTHLYYRRGFPFYTFNIVGGLDEEGIGAVYGYDAVGSFERVRVACAGGGLSLMQPVLDRLDAAEAVTGAGGCGRAGREQPVVAVGLEEALALVRRAFVAGGERDISLGDEVEIVVVTRQG--HRRERLQLKSH 249
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|1072227564|gb|OEU12303.1| (putative proteasome subunit beta type 1 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 170.244 bits (430), Expect = 1.280e-47 Identity = 98/223 (43.95%), Postives = 126/223 (56.50%), Query Frame = 0 Query: 98 RRAQPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPRMESFALPR 320 RR PY + NGGT VA+AGPDY ++AADTRLSS Y I +RN+S+L +S +G AG DV LR L + + H + T A+A L N LY R P YA N+ G++ G+GAVYSYD IGSF R P G GQ I P+LD +A N+L+ L EE ++VK+AFLS ER+I GD V I ++ K +E FAL R Sbjct: 57 RRFSPYDF-------NGGTCVAIAGPDYAVIAADTRLSSGYEILSRNMSKLHPLSGKCILGSAGCKTDVDQLRSVLDIKMKMYLHNHRKTMSTPAVAQMLGNTLYYKRFFPYYAFNVFGGIDEEGKGAVYSYDAIGSFERTPVTATGSGQAYIIPLLDNVIAHR-NRLDEKR-DLPKEEVVEIVKDAFLSCGERDIYTGDQVEISVITKDGIETSF--FALKR 268
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|552831672|ref|XP_005848182.1| (hypothetical protein CHLNCDRAFT_22624 [Chlorella variabilis] >gi|307107838|gb|EFN56080.1| hypothetical protein CHLNCDRAFT_22624 [Chlorella variabilis]) HSP 1 Score: 168.318 bits (425), Expect = 3.514e-47 Identity = 95/209 (45.45%), Postives = 124/209 (59.33%), Query Frame = 0 Query: 101 QPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLD-QFMAQDGNKLNSNN--APLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQK 306 Q W+P +DNGGTVVAVAG DYC+VAA TR+S+ Y I TRN S++++++P + AG AD TL L ++ H + A+A LSN LY R P Y NL AGL+ G+GAVY+YD IGS+ RV C G G+EL+QPVLD Q A L + L E+A +VK AF+S ER+I GD V I+I+ K Sbjct: 20 QHATWSP--YDDNGGTVVAVAGDDYCVVAASTRMSTGYSILTRNKSKILQLNPKCVIASAGMQADQETLHKVLHSRHVTYQFNHRKPMACPAMAQLLSNTLYYKRFFPYYTFNLCAGLDDEGRGAVYTYDAIGSYERVGYGCQGNGKELVQPVLDNQLKAASPLALPPQQWLSSLPLEQAVDLVKGAFVSAGERDIYTGDDVEILIITK 226
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|290986448|ref|XP_002675936.1| (predicted protein [Naegleria gruberi] >gi|284089535|gb|EFC43192.1| predicted protein [Naegleria gruberi]) HSP 1 Score: 167.162 bits (422), Expect = 6.232e-47 Identity = 88/196 (44.90%), Postives = 117/196 (59.69%), Query Frame = 0 Query: 111 EDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQK 306 EDNGGT +A+ GPDY IVAADTR+S Y I+TR ++L +++ + AG +D TL L L +E +HG + A+ LSN LY R P Y NLVAGL+ G+G V+SYD IGS+ V G GQ LIQP+LD +A N L N L+ E++ +VK+AF S ER+I GD V I+I+ K Sbjct: 16 EDNGGTTLAIPGPDYVIVAADTRMSLGYSIQTRKSTKLCKLTDKCVIASAGMQSDAATLHKVLKMRLVEYEHQHGKPMSVVAVGQMLSNMLYNRRFFPYYTFNLVAGLDTDGKGIVFSYDAIGSYQSVEVGSQGSGQTLIQPLLDNQVAFK-NHLLVPNTDLTLEQSLSIVKDAFTSAGERDIYTGDSVEILIITK 210
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|225719280|gb|ACO15486.1| (Proteasome subunit beta type-1 precursor [Caligus clemensi]) HSP 1 Score: 167.162 bits (422), Expect = 8.475e-47 Identity = 82/213 (38.50%), Postives = 125/213 (58.69%), Query Frame = 0 Query: 101 QPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSD-YRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPR 312 QPYQ DNGGT + +AGPD+ ++A+DTRL+S Y I +RNV ++ ++S + +G G W DV T + + + HG +GT ALA +SN LY R P Y N++AGL+ GQG +Y+YD +G +V +C G ELIQP+LD + + N N+ L+ +E+ ++ + F+S ER+IS GDG+ I+ K +E + Sbjct: 28 QPYQ-------DNGGTTIGIAGPDFAVIASDTRLTSGGYDILSRNVPKVFQLSEKSVLGSCGCWCDVLTFVRVMESKMKNYSYTHGKDLGTPALAQLISNSLYQRRFLPYYIHNVLAGLDENGQGCIYTYDPVGCIEKVTMSCSGASMELIQPILDNIIDKK-NMTNATKKDLTIDESVNLIHDCFVSATERQISTGDGIIFKIITKDGIETK 232
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|225719776|gb|ACO15734.1| (Proteasome subunit beta type-1 precursor [Caligus clemensi]) HSP 1 Score: 167.548 bits (423), Expect = 1.354e-46 Identity = 82/213 (38.50%), Postives = 125/213 (58.69%), Query Frame = 0 Query: 101 QPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSD-YRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPR 312 QPYQ DNGGT + +AGPD+ ++A+DTRL+S Y I +RNV ++ ++S + +G G W DV T + + + HG +GT ALA +SN LY R P Y N++AGL+ GQG +Y+YD +G +V +C G ELIQP+LD + + N N+ L+ +E+ ++ + F+S ER+IS GDG+ I+ K +E + Sbjct: 60 QPYQ-------DNGGTTIGIAGPDFAVIASDTRLTSGGYDILSRNVPKVFQLSEKSVLGSCGCWCDVLTFVRVMESKMKNYSYTHGKDLGTPALAQLISNSLYQRRFLPYYIHNVLAGLDENGQGCIYTYDPVGCIEKVTMSCSGASMELIQPILDNIIDKK-NMTNATKKDLTIDESVNLIHDCFVSATERQISTGDGIIFKIITKDGIETK 264
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|397610458|gb|EJK60845.1| (hypothetical protein THAOC_18741 [Thalassiosira oceanica]) HSP 1 Score: 167.933 bits (424), Expect = 1.411e-46 Identity = 87/215 (40.47%), Postives = 129/215 (60.00%), Query Frame = 0 Query: 98 RRAQPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPR 312 RR PY++ NGGT +A++GPDY +VAADTRLSS Y I +RNVS+L ++ +G AG DV LR L + + H + T ++A L N LY R P Y+ N++AG+++ G+GAVYSYD IGSF R P + G GQ + P++D ++ N+L+ L EE ++VK+AFL+ ER+I GD V I+++ K ++ + Sbjct: 71 RRFSPYEF-------NGGTTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTGRCVLGSAGCKTDVDQLRSVLDIKMKVYAHNHRKPMATPSVAQMLGNTLYYKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQSFLIPLMDNVISHK-NRLDERR-DLPAEEVVEIVKDAFLTAGERDIYTGDAVDIMVITKDGIDKQ 276 The following BLAST results are available for this feature:
BLAST of EWM22645.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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