EWM22645.1, cds8020 (CDS) Nannochloropsis gaditana

Overview
NameEWM22645.1
Unique Namecds8020
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:422658..423173 +
Alignment locationKK037247.1:423255..423402 +
Alignment locationKK037247.1:423499..423575 +
Alignment locationKK037247.1:423676..423900 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22645.1
ProductProteasome, beta-type subunit, conserved site
Orig transcript idgnl|cribi|Naga_100023g30.3961.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:422658..423173 +
KK037247.1supercontigKK037247.1:423255..423402 +
KK037247.1supercontigKK037247.1:423499..423575 +
KK037247.1supercontigKK037247.1:423676..423900 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004175endopeptidase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005839proteasome core complex
Vocabulary: INTERPRO
TermDefinition
IPR023333Proteasome_suB-type
IPR016050Proteasome_bsu_CS
IPR029055Ntn_hydrolases_N
IPR001353Proteasome_sua/b
Homology
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|585103210|gb|EWM22645.1| (Proteasome, beta-type subunit, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 669.078 bits (1725), Expect = 0.000e+0
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0
Query:    1 MTQEVLRVLAGFSALGDKYRKMFGNFCVPQFLFLGLIRVAWTHSSQPWTYSMPPNALDDGPRLPIPGFCRDGERPAGYFRTTSGDFYGSSLEKFLPTRRAQPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPRMESFALPRH 321
            MTQEVLRVLAGFSALGDKYRKMFGNFCVPQFLFLGLIRVAWTHSSQPWTYSMPPNALDDGPRLPIPGFCRDGERPAGYFRTTSGDFYGSSLEKFLPTRRAQPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPRMESFALPRH
Sbjct:    1 MTQEVLRVLAGFSALGDKYRKMFGNFCVPQFLFLGLIRVAWTHSSQPWTYSMPPNALDDGPRLPIPGFCRDGERPAGYFRTTSGDFYGSSLEKFLPTRRAQPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPRMESFALPRH 321          
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|223993685|ref|XP_002286526.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977841|gb|EED96167.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 175.637 bits (444), Expect = 1.714e-49
Identity = 98/252 (38.89%), Postives = 147/252 (58.33%), Query Frame = 0
Query:   71 DGERPAGYFRTTSGDFYGSSLEKFLP----TRRAQPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPRMESFAL 318
            DG+  +   + T+ D  GS+++  +      RR  PY++       NGGT +A++GPDY +VAADTRLSS Y I +RNVS+L  ++    +G AG   DV  LR  L   +  +   H  A+ T ++A  L N LYM R  P Y+ N++AG+++ G+GAVYSYD IGSF R P +  G GQ  + P++D  ++   N+L+     L  EE  ++VK+AFL+  ER+I  GD V I+++    +E   E+F L
Sbjct:   37 DGQNLSLSQQPTALDIDGSNIDHGITQSPWERRFSPYEF-------NGGTTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTEKCVLGSAGCKTDVDQLRSVLDIKMKVYAHNHRKAMATPSVAQMLGNTLYMKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQAFLIPLMDNVISHK-NRLDQKR-ELGSEEVVEIVKDAFLTAGERDIYTGDAVEIMVITAKGIES--ETFKL 277          
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|612399936|ref|XP_007515487.1| (predicted protein [Bathycoccus prasinos] >gi|412993855|emb|CCO14366.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 171.4 bits (433), Expect = 2.172e-48
Identity = 97/228 (42.54%), Postives = 132/228 (57.89%), Query Frame = 0
Query:  101 QPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLN----------SNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPRMESFAL 318
            Q   W+P   ++NGGTV+AVAG DY I AADTR+S+ Y I TR  +++ E+SP T +  AG  AD  TL+  L      ++  +   IG  A A  LSN LYM R  P YA N+VAGL+A G+GAV++YD +GS+ R   +C G GQ+LI PVLD       N+L           S+  PLS EEA  ++K+ F +  ER+I  GD V + +M K  +  R E+  L
Sbjct:   24 QHATWSP--YDNNGGTVMAVAGEDYVICAADTRMSTGYSIMTRQYTKVDEMSPKTLMASAGFMADAATLKKLLKGRCDQYQFANNKPIGCVAFAQMLSNTLYMRRFFPYYAFNIVAGLDAEGKGAVFTYDAVGSYERTNYSCQGSGQQLIMPVLD-------NQLKTVSPLVLPAVSSATPLSEEEAIDLIKDCFATAGERDIYTGDAVELFVMNKDGI--RKETMPL 240          
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|299116145|emb|CBN76052.1| (proteasome beta subunit [Ectocarpus siliculosus])

HSP 1 Score: 170.244 bits (430), Expect = 6.795e-48
Identity = 95/219 (43.38%), Postives = 125/219 (57.08%), Query Frame = 0
Query:  112 DNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNN---------APLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPRMESFALPRH 321
            +NGGTVVAVAGPDYCI+AAD+RLS  Y I +RNV+R+  +S  T +  AG WAD   L   L Y +  +E +    +GT A++  LS  LY  R  P Y  N+V GL+  G GAVY YD +GSF RV  AC G G  L+QPVLD+  A +                   +  EEA  +V+ AF++G ER+IS+GD V IV++ +     R E   L  H
Sbjct:   33 NNGGTVVAVAGPDYCIIAADSRLSDGYTILSRNVTRVHRLSGDTHLATAGCWADTQGLLRLLEYLIRDYEMEQRRTMGTKAVSRMLSTHLYYRRGFPFYTFNIVGGLDEEGIGAVYGYDAVGSFERVRVACAGGGLSLMQPVLDRLDAAEAVTGAGGCGRAGREQPVVAVGLEEALALVRRAFVAGGERDISLGDEVEIVVVTRQG--HRRERLQLKSH 249          
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|1072227564|gb|OEU12303.1| (putative proteasome subunit beta type 1 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 170.244 bits (430), Expect = 1.280e-47
Identity = 98/223 (43.95%), Postives = 126/223 (56.50%), Query Frame = 0
Query:   98 RRAQPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPRMESFALPR 320
            RR  PY +       NGGT VA+AGPDY ++AADTRLSS Y I +RN+S+L  +S    +G AG   DV  LR  L   +  +   H   + T A+A  L N LY  R  P YA N+  G++  G+GAVYSYD IGSF R P    G GQ  I P+LD  +A   N+L+     L  EE  ++VK+AFLS  ER+I  GD V I ++ K  +E     FAL R
Sbjct:   57 RRFSPYDF-------NGGTCVAIAGPDYAVIAADTRLSSGYEILSRNMSKLHPLSGKCILGSAGCKTDVDQLRSVLDIKMKMYLHNHRKTMSTPAVAQMLGNTLYYKRFFPYYAFNVFGGIDEEGKGAVYSYDAIGSFERTPVTATGSGQAYIIPLLDNVIAHR-NRLDEKR-DLPKEEVVEIVKDAFLSCGERDIYTGDQVEISVITKDGIETSF--FALKR 268          
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|552831672|ref|XP_005848182.1| (hypothetical protein CHLNCDRAFT_22624 [Chlorella variabilis] >gi|307107838|gb|EFN56080.1| hypothetical protein CHLNCDRAFT_22624 [Chlorella variabilis])

HSP 1 Score: 168.318 bits (425), Expect = 3.514e-47
Identity = 95/209 (45.45%), Postives = 124/209 (59.33%), Query Frame = 0
Query:  101 QPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLD-QFMAQDGNKLNSNN--APLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQK 306
            Q   W+P   +DNGGTVVAVAG DYC+VAA TR+S+ Y I TRN S++++++P   +  AG  AD  TL   L      ++  H   +   A+A  LSN LY  R  P Y  NL AGL+  G+GAVY+YD IGS+ RV   C G G+EL+QPVLD Q  A     L      + L  E+A  +VK AF+S  ER+I  GD V I+I+ K
Sbjct:   20 QHATWSP--YDDNGGTVVAVAGDDYCVVAASTRMSTGYSILTRNKSKILQLNPKCVIASAGMQADQETLHKVLHSRHVTYQFNHRKPMACPAMAQLLSNTLYYKRFFPYYTFNLCAGLDDEGRGAVYTYDAIGSYERVGYGCQGNGKELVQPVLDNQLKAASPLALPPQQWLSSLPLEQAVDLVKGAFVSAGERDIYTGDDVEILIITK 226          
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|290986448|ref|XP_002675936.1| (predicted protein [Naegleria gruberi] >gi|284089535|gb|EFC43192.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 167.162 bits (422), Expect = 6.232e-47
Identity = 88/196 (44.90%), Postives = 117/196 (59.69%), Query Frame = 0
Query:  111 EDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQK 306
            EDNGGT +A+ GPDY IVAADTR+S  Y I+TR  ++L +++    +  AG  +D  TL   L   L  +E +HG  +   A+   LSN LY  R  P Y  NLVAGL+  G+G V+SYD IGS+  V     G GQ LIQP+LD  +A   N L   N  L+ E++  +VK+AF S  ER+I  GD V I+I+ K
Sbjct:   16 EDNGGTTLAIPGPDYVIVAADTRMSLGYSIQTRKSTKLCKLTDKCVIASAGMQSDAATLHKVLKMRLVEYEHQHGKPMSVVAVGQMLSNMLYNRRFFPYYTFNLVAGLDTDGKGIVFSYDAIGSYQSVEVGSQGSGQTLIQPLLDNQVAFK-NHLLVPNTDLTLEQSLSIVKDAFTSAGERDIYTGDSVEILIITK 210          
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|225719280|gb|ACO15486.1| (Proteasome subunit beta type-1 precursor [Caligus clemensi])

HSP 1 Score: 167.162 bits (422), Expect = 8.475e-47
Identity = 82/213 (38.50%), Postives = 125/213 (58.69%), Query Frame = 0
Query:  101 QPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSD-YRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPR 312
            QPYQ       DNGGT + +AGPD+ ++A+DTRL+S  Y I +RNV ++ ++S  + +G  G W DV T    +   +  +   HG  +GT ALA  +SN LY  R  P Y  N++AGL+  GQG +Y+YD +G   +V  +C G   ELIQP+LD  + +  N  N+    L+ +E+  ++ + F+S  ER+IS GDG+   I+ K  +E +
Sbjct:   28 QPYQ-------DNGGTTIGIAGPDFAVIASDTRLTSGGYDILSRNVPKVFQLSEKSVLGSCGCWCDVLTFVRVMESKMKNYSYTHGKDLGTPALAQLISNSLYQRRFLPYYIHNVLAGLDENGQGCIYTYDPVGCIEKVTMSCSGASMELIQPILDNIIDKK-NMTNATKKDLTIDESVNLIHDCFVSATERQISTGDGIIFKIITKDGIETK 232          
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|225719776|gb|ACO15734.1| (Proteasome subunit beta type-1 precursor [Caligus clemensi])

HSP 1 Score: 167.548 bits (423), Expect = 1.354e-46
Identity = 82/213 (38.50%), Postives = 125/213 (58.69%), Query Frame = 0
Query:  101 QPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSD-YRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPR 312
            QPYQ       DNGGT + +AGPD+ ++A+DTRL+S  Y I +RNV ++ ++S  + +G  G W DV T    +   +  +   HG  +GT ALA  +SN LY  R  P Y  N++AGL+  GQG +Y+YD +G   +V  +C G   ELIQP+LD  + +  N  N+    L+ +E+  ++ + F+S  ER+IS GDG+   I+ K  +E +
Sbjct:   60 QPYQ-------DNGGTTIGIAGPDFAVIASDTRLTSGGYDILSRNVPKVFQLSEKSVLGSCGCWCDVLTFVRVMESKMKNYSYTHGKDLGTPALAQLISNSLYQRRFLPYYIHNVLAGLDENGQGCIYTYDPVGCIEKVTMSCSGASMELIQPILDNIIDKK-NMTNATKKDLTIDESVNLIHDCFVSATERQISTGDGIIFKIITKDGIETK 264          
BLAST of EWM22645.1 vs. NCBI_GenBank
Match: gi|397610458|gb|EJK60845.1| (hypothetical protein THAOC_18741 [Thalassiosira oceanica])

HSP 1 Score: 167.933 bits (424), Expect = 1.411e-46
Identity = 87/215 (40.47%), Postives = 129/215 (60.00%), Query Frame = 0
Query:   98 RRAQPYQWAPDMVEDNGGTVVAVAGPDYCIVAADTRLSSDYRIRTRNVSRLIEISPCTFVGMAGSWADVTTLRHELAYDLSCFEAKHGGAIGTAALATFLSNRLYMHRLQPVYALNLVAGLNALGQGAVYSYDVIGSFNRVPAACCGRGQELIQPVLDQFMAQDGNKLNSNNAPLSCEEAFQVVKNAFLSGAEREISIGDGVHIVIMQKGKLEPR 312
            RR  PY++       NGGT +A++GPDY +VAADTRLSS Y I +RNVS+L  ++    +G AG   DV  LR  L   +  +   H   + T ++A  L N LY  R  P Y+ N++AG+++ G+GAVYSYD IGSF R P +  G GQ  + P++D  ++   N+L+     L  EE  ++VK+AFL+  ER+I  GD V I+++ K  ++ +
Sbjct:   71 RRFSPYEF-------NGGTTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTGRCVLGSAGCKTDVDQLRSVLDIKMKVYAHNHRKPMATPSVAQMLGNTLYYKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQSFLIPLMDNVISHK-NRLDERR-DLPAEEVVEIVKDAFLTAGERDIYTGDAVDIMVITKDGIDKQ 276          
The following BLAST results are available for this feature:
BLAST of EWM22645.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103210|gb|EWM22645.1|0.000e+0100.00Proteasome, beta-type subunit, conserved site [Nan... [more]
gi|223993685|ref|XP_002286526.1|1.714e-4938.89predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|612399936|ref|XP_007515487.1|2.172e-4842.54predicted protein [Bathycoccus prasinos] >gi|41299... [more]
gi|299116145|emb|CBN76052.1|6.795e-4843.38proteasome beta subunit [Ectocarpus siliculosus][more]
gi|1072227564|gb|OEU12303.1|1.280e-4743.95putative proteasome subunit beta type 1 [Fragilari... [more]
gi|552831672|ref|XP_005848182.1|3.514e-4745.45hypothetical protein CHLNCDRAFT_22624 [Chlorella v... [more]
gi|290986448|ref|XP_002675936.1|6.232e-4744.90predicted protein [Naegleria gruberi] >gi|28408953... [more]
gi|225719280|gb|ACO15486.1|8.475e-4738.50Proteasome subunit beta type-1 precursor [Caligus ... [more]
gi|225719776|gb|ACO15734.1|1.354e-4638.50Proteasome subunit beta type-1 precursor [Caligus ... [more]
gi|397610458|gb|EJK60845.1|1.411e-4640.47hypothetical protein THAOC_18741 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8042rna8042Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications