rna804, rna804 (mRNA) Nannochloropsis gaditana

Overview
Namerna804
Unique Namerna804
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2875
Alignment locationCM002456.1:460923..461687 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100106g18.1457.mrna
Orig protein idgnl|cribi|Naga_100106g18.1457
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:460923..461687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100106g18gene770Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna804rna804-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29883.1cds804Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna804 ID=rna804|Name=rna804|organism=Nannochloropsis gaditana|type=mRNA|length=2875bp
TCGGAAACGTCAATTATTTGTGGCCTCTGCGTACCATTGGCGCAACAATT
TTATGCCCTGGACCACTATAAGACTGAAAGTTTCTGGTAGGGTGAAGGTC
TGTGGCAAATCTTCAGGTCCTACAGAAATGGGTTTTCTCGGTCGCCTCAG
ACCGTCGGTGGGATGTTGGCGCGAAGGACGTTGGACTCCTCATCGAAACC
TTGACTTCCTTTGGCAAGACTCCATGACCTTGATTTCAGGTCATTGTTAA
ACCATTCATACGGGTAGGCAGACAGGCAAAATTTTTATTGATTGGTACCT
GTGTGATCTTCTTCACACGAAAGGCCGGGGTCTTGATGATCATACAACTC
GACATCACTCCTCACAATCGAGAAGCAAGTAGTCCTCGCTCGCTCACCAT
CGCCTTGGTGTGACGTGACTCCAAGCATGGGAACGCATTTTCAAATGTTT
ATGGTTATAACTCGCACGTTAGTTTTGGAACAGCTAGGCACGGACCCCTT
GTGTCAAACGGAGTTGGATGTAAACCGTGCGAGTCTCTACAAGTGCTTAT
CCACTCATGGCCTAGAACCCCATTCTCAGGTAAACACGGCCTCATAAATG
CAGTTCCACAAACATCCTCGCGATGAGCTTGTTCACGATAAAAACATGCC
ATACGATGCTATATTGCAAAAATTGCCCGCTATAGACTTTGCTTTCGCCT
ACGGAAGTGGTGTTTTTGGACAGGATGGATATTCCGACCATGAACAAAAG
GAAGCAATTAGGGGCGTCAATGATCAACTCCTCCAGCCTGGAGGGTCGAC
ACCGTCTGCAAACATGCAACTTAAACGCCCTCCCATGCTTGATTTGGTGG
TAGCTGTGCGCAATCCAATCGAATGGCACCGGGAAAATCTGGAGCGGAAT
TGGAAGGACTATTCAATACTGCGATACCTGGGAGCCGAGAGGTTAGGGCA
GATACAAGAGGACTATGGCGCCGCTCTCTACTACAACACGGCTCTTCCTG
TTCCAGGACACCCCAACCGCGTCATGAAGTATGGCATCATTAGCACCCAT
GCTCTTCGGCGGGACCTGGTCGATTGGCAATGGATGTATGCAGCAGGGCG
CATGCAGAAACCTGTCAAAATTCTTAAAGCTTACGAGGCACTTGCGGAAG
CACAACGCATGAACTTGAGAAGTGCCGTACGCGCGGCTTTGCTCCTGCTT
CCCGAGTCCTTTTCCGACTTCGACTTATTCACGATGATCGCGGGCCTGTC
ATATAGGGGCGACTTCCGCATGACTTTCGGAGAAAATCCTAGAAAAGTGA
AAAATATCGTCACTTCCAACTTACCACATTTTCATGAATTGTATTCTCCT
GTTTTGGCGACTTTCTCGTCTTTGACAGCTGCCGCTGCAGACAAAGGACG
GTTCTCTCAAGACCTGAGCCCTAGGGTTCGGGCCAGCCACCTCCGTCAGC
TTCCAATGGCACTGCGGCAATTCTTGGTGCCGCGAAAACTACGAGACGTT
ATGTCAAGCGAAAGAAGTACAAAAATTGTGCATTCAAGAGAAGAGGAGGA
CAAGGCTCTTCGAGACGCCTGGGAACAGTTGTCAGGGAAGAAGACTTCGA
AGATGGTGAAGCTTGCCATCCACAAAGTGGTAGCTCGCTCAAGTTTGACT
CAAGGCTTCAAAGGCGTATTCACGGCAGGTGTGTGGAAAGCACTCGTTTA
TAGTTTACACAAGATGAACAAATATCGGATAGGGATGGGGAAATCGAACC
CCACAAATAAAATGTAAGCAAGCAACTGAAGACCATCAGCAAATAAATAA
TTCATGTAGAAACAAAACGGTTTATTATTATGTCAGTTTATGGGTGGATA
AATAGCAGCGACCGCTTTAATCCAGAAATGCACAGCCTGCCAGAAGTATT
ATCATCACTCCAGTCGATTGCCTCCCAACTTAAATTTTAAATTTTTTGAA
TCCGATTTCTGATCCGCTTCGAATATTTGACAGCAAGTCAGCTTTTCGAG
CATGTGCTTTGGGCACCACGCTGAAATATAAGCACGGTCTCGTGCGACCG
ACAAATTAATTAATTGATTAAGCTTTCCTTCCTGGGACTGGGTTTTCATT
CCTTGGTGGGGGTAGGCGGTTCAAAGAAGTTGCATGGGAGAAGACGAGGG
AGAAAAAGTTCAACAAATACTAACTTGAGCTCATTAAAGACAACAAGCTT
TTATGAAACAAGAGGGTGTTCATATATCTTGACCGTCATTTATATCAATA
ACGATAAGATTCAGGATCGAAAGGATGATGGATGTGAATCGAGATATAAT
TTATCCGAAGAGATATGCATGTTCGGTTTCCCCCCGAGGACCAAGAATGT
TGAGATCAGATTAGTGTCTATTGTGGACTTTGAATAGATTTTAATAATGC
TGAAACAAAATTTCATGTTGTTGAGCTAGGCTTCTCAAGAGATGGCCTTC
CTATGCTGTGCGACAGGAAGTAAGGGGTTGAAAGAACTCACTTTTTTCGT
ATGAACGAGTCACAACAAAATTCAAGTCAAACCTTACCACAACGTCGTAA
TATTTCCTTAGGATTTTTTCGATAAGCCGATACTTTTTCCTGTCTTTATT
CGACCATATGAATGCGATGCTGCATTTGCTTCTACTGGCTCAATTTCTCC
GCCCAAACGCCGCTGTGTGCTTACGAGACAATATGGATAAGGAAAGGGTG
CCGCAAGAGCAAAACGGGCATATTCGAAATCTGCAAGAGGTATTTGAGTA
CGCTGTCGAGAGAGGGCGCCTTGATCCGCACGTAGCACAAGGTCATACAT
TTGATAATGGCAATTTGGTCTTACCCGTGTATCAGTCTCTCGGACCGTCA
CAAGTCGGTAAGTATCCTGTGTGTG
back to top

protein sequence of rna804

>rna804-protein ID=rna804-protein|Name=rna804|organism=Nannochloropsis gaditana|type=polypeptide|length=254bp
MWFCEKCKWEKANDFKSAAATPPLEAGASASITPTSFPPIACHFCGQTSG
AMKGSRDKRLWGHVVCVRFDPEAFFQDPNRLAVLVFHRFKTSPSRTKLCG
ICHDAGGLTVPCPWPECKTQVHARCAHRHGLVHLDASFGHALPLIYCPDH
ESRRLDPFSLVSLAKPALAGSAGRALVHAMEEKLSGQGTAYEEVDAFGRD
LTGIVEELRSSKRPSTDHALAEELQLRLELLKRSSLTATSMLTRKGKEKC
DIEK
back to top

mRNA from alignment at CM002456.1:460923..461687+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna804 ID=rna804|Name=rna804|organism=Nannochloropsis gaditana|type=mRNA|length=765bp|location=Sequence derived from alignment at CM002456.1:460923..461687+ (Nannochloropsis gaditana)
ATGTGGTTCTGCGAGAAATGCAAATGGGAGAAAGCCAACGACTTCAAGTC
CGCCGCCGCGACTCCTCccctggaggcaggggcctccgcctccatcactc
CGACCAGCTTTCCCCCCATCGCCTGCCATTTTTGCGGACAGACCTCCGGG
GCCATGAAAGGGAGCAGGGACAAGCGGCTCTGGGGTCACGTGGTCTGCGT
CCGGTTCGACCCCGAGGCCTTTTTCCAGGACCCGAACCGCCTGGCCGTGC
TCGTCTTCCACCGATTCaagacctcgccctcccgcacCAAACTCTGTGGG
ATCTGCCACGACGCCGGGGGACTGACCGTCCCGTGCCCGTGGCCGGAGTG
CAAGACCCAAGTCCATGCCCGATGCGCCCACCGACACGGACTCGTGCATT
TGGACGCATCCTTCGGGCACGCGCTTCCGCTCATCTACTGCCCCGATCAC
GAGAGCCGCCGCTTGGATCCATTCTCGTTGGTCAGCCTGGCCAAGCCTGC
CTTGGCTGGttcggcggggagggcgctgGTGCacgcgatggaggagaagc
tgtcTGGACAAGGGACGGCCTACGAGGAAGTCGATGCCTTCGGACGGGAT
CTGACGGGGATCGTGGAGGAGTTGAGGTCGTCGAAAAGGCCCAGTACGGA
CCACgccttggcggaggagctgcaaTTACGCCTTGAGCTCCTGAAAAGGA
GTTCGCTGACTGCAACTTCGATGTTGACGCgcaaggggaaagagaagtgT
GACATTGAAAAGTAA
back to top

Coding sequence (CDS) from alignment at CM002456.1:460923..461687+

>rna804 ID=rna804|Name=rna804|organism=Nannochloropsis gaditana|type=CDS|length=765bp|location=Sequence derived from alignment at CM002456.1:460923..461687+ (Nannochloropsis gaditana)
ATGTGGTTCTGCGAGAAATGCAAATGGGAGAAAGCCAACGACTTCAAGTC
CGCCGCCGCGACTCCTCccctggaggcaggggcctccgcctccatcactc
CGACCAGCTTTCCCCCCATCGCCTGCCATTTTTGCGGACAGACCTCCGGG
GCCATGAAAGGGAGCAGGGACAAGCGGCTCTGGGGTCACGTGGTCTGCGT
CCGGTTCGACCCCGAGGCCTTTTTCCAGGACCCGAACCGCCTGGCCGTGC
TCGTCTTCCACCGATTCaagacctcgccctcccgcacCAAACTCTGTGGG
ATCTGCCACGACGCCGGGGGACTGACCGTCCCGTGCCCGTGGCCGGAGTG
CAAGACCCAAGTCCATGCCCGATGCGCCCACCGACACGGACTCGTGCATT
TGGACGCATCCTTCGGGCACGCGCTTCCGCTCATCTACTGCCCCGATCAC
GAGAGCCGCCGCTTGGATCCATTCTCGTTGGTCAGCCTGGCCAAGCCTGC
CTTGGCTGGttcggcggggagggcgctgGTGCacgcgatggaggagaagc
tgtcTGGACAAGGGACGGCCTACGAGGAAGTCGATGCCTTCGGACGGGAT
CTGACGGGGATCGTGGAGGAGTTGAGGTCGTCGAAAAGGCCCAGTACGGA
CCACgccttggcggaggagctgcaaTTACGCCTTGAGCTCCTGAAAAGGA
GTTCGCTGACTGCAACTTCGATGTTGACGCgcaaggggaaagagaagtgT
GACATTGAAAAGTAA
back to top
Synonyms
Publications