EWM29883.1, cds804 (CDS) Nannochloropsis gaditana

Overview
NameEWM29883.1
Unique Namecds804
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:460923..461687 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29883.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100106g18.1457.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:460923..461687 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
BLAST of EWM29883.1 vs. NCBI_GenBank
Match: gi|585112465|gb|EWM29883.1| (hypothetical protein Naga_100106g18 [Nannochloropsis gaditana])

HSP 1 Score: 521.931 bits (1343), Expect = 0.000e+0
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0
Query:    1 MWFCEKCKWEKANDFKSAAATPPLEAGASASITPTSFPPIACHFCGQTSGAMKGSRDKRLWGHVVCVRFDPEAFFQDPNRLAVLVFHRFKTSPSRTKLCGICHDAGGLTVPCPWPECKTQVHARCAHRHGLVHLDASFGHALPLIYCPDHESRRLDPFSLVSLAKPALAGSAGRALVHAMEEKLSGQGTAYEEVDAFGRDLTGIVEELRSSKRPSTDHALAEELQLRLELLKRSSLTATSMLTRKGKEKCDIEK 254
            MWFCEKCKWEKANDFKSAAATPPLEAGASASITPTSFPPIACHFCGQTSGAMKGSRDKRLWGHVVCVRFDPEAFFQDPNRLAVLVFHRFKTSPSRTKLCGICHDAGGLTVPCPWPECKTQVHARCAHRHGLVHLDASFGHALPLIYCPDHESRRLDPFSLVSLAKPALAGSAGRALVHAMEEKLSGQGTAYEEVDAFGRDLTGIVEELRSSKRPSTDHALAEELQLRLELLKRSSLTATSMLTRKGKEKCDIEK
Sbjct:    1 MWFCEKCKWEKANDFKSAAATPPLEAGASASITPTSFPPIACHFCGQTSGAMKGSRDKRLWGHVVCVRFDPEAFFQDPNRLAVLVFHRFKTSPSRTKLCGICHDAGGLTVPCPWPECKTQVHARCAHRHGLVHLDASFGHALPLIYCPDHESRRLDPFSLVSLAKPALAGSAGRALVHAMEEKLSGQGTAYEEVDAFGRDLTGIVEELRSSKRPSTDHALAEELQLRLELLKRSSLTATSMLTRKGKEKCDIEK 254          
BLAST of EWM29883.1 vs. NCBI_GenBank
Match: gi|553182797|ref|XP_005853786.1| (hypothetical protein NGA_2069200, partial [Nannochloropsis gaditana CCMP526] >gi|422295275|gb|EKU22574.1| hypothetical protein NGA_2069200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 83.5741 bits (205), Expect = 5.970e-17
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0
Query:    1 MWFCEKCKWEKANDFKSAAATPPLEAGASASITPTSFP 38
            MWFCEKCKWEKANDFKSAAATPPLEAGASASITPTSFP
Sbjct:   77 MWFCEKCKWEKANDFKSAAATPPLEAGASASITPTSFP 114          
BLAST of EWM29883.1 vs. NCBI_GenBank
Match: gi|403359825|gb|EJY79569.1| (Protein Jade-3 (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 68.5514 bits (166), Expect = 1.284e-9
Identity = 40/127 (31.50%), Postives = 60/127 (47.24%), Query Frame = 0
Query:   40 IACHFCGQTSGAMKGSRDKRLWGHVVCVRFDPEAFFQD--PNRL-AVLVFHRFKTSPSRTKLCGICH--DAGGLTVPCPWPECKTQVHARCAHRHGLVH----LDASFG----HALPLIYCPDHESR 153
            I C FC    GAMK   D  +W HV+CV ++P+ +F D   N++  VL   R++        C +CH   A G  + C +  C    H RCA R G++     +    G    H +PL +C +H  +
Sbjct:  366 IKCKFCPDVDGAMKKLVDSDMWAHVICVNWNPDIYFTDKYKNKIEGVLNSKRYELQ------CNMCHRPKAQGCCIQCDFKNCSASYHVRCAVRRGVIEEWDKIQEKAGVEDEHFIPL-FCEEHAEK 485          
BLAST of EWM29883.1 vs. NCBI_GenBank
Match: gi|678334882|emb|CDW76823.1| (phd zinc finger-containing protein [Stylonychia lemnae])

HSP 1 Score: 68.5514 bits (166), Expect = 1.546e-9
Identity = 53/208 (25.48%), Postives = 80/208 (38.46%), Query Frame = 0
Query:    2 WFCEKCKWEKAN-DFKSAAATPPLEAGASASITPTSFPPIACHFCGQTSGAMKGSRDKRLWGHVVCVRFDPEAFFQDPNR---LAVLVFHRFKTSPSRTKLCGICHDAG-GLTVPCPWPECKTQVHARCAHRHGLVH----LDASFGHA----LPLIYCPDHESRRLDPFSLVSLAKPALAGSAGRALVHAMEEKLSGQGTAYEEVDA 196
            W+CE+C     N D K                       I C  C    G +K   D  LW H +CV ++P+ +F D  +     VL   RF+ +      C  CH  G G  + C +  C    H RCA R GL+     ++   G A    +P ++C DHE +  + F      K          +  A +EK + +   Y E+ +
Sbjct:  331 WYCERCSVLLRNRDMKCTE--------------------IKCFLCPDIDGVLK-QIDNELWAHAICVNWNPDIYFTDAKKNKVEGVLNKQRFELN------CQKCHKKGKGTCIQCDYKNCSRSYHVRCAVRRGLIQEWEKMEDKAGEAQDNFIP-VFCEDHEKKGYEKFK-----KGGKQEIQSIQMTQAFKEKAAERLNKYREIQS 505          
BLAST of EWM29883.1 vs. NCBI_GenBank
Match: gi|685833163|emb|CEF68084.1| (Zinc finger, PHD-type domain and Zinc finger, FYVE/PHD-type domain and Zinc finger, RING/FYVE/PHD-type domain and Zinc finger, PHD-finger domain-containing protein [Strongyloides ratti])

HSP 1 Score: 68.1662 bits (165), Expect = 1.954e-9
Identity = 49/165 (29.70%), Postives = 67/165 (40.61%), Query Frame = 0
Query:    2 WFCEKCKWEKANDFKSAAATPPLEAGASASITPTSFPPIA---CHFCGQTSGAMKGSRDKRLWGHVVCVRFDPEAFFQDPNRLAVLVFHRFKTSPSRTKLCGICHDAGGLTVPCPWPECKTQVHARCAHRHGL-VHLDASFGHALPLIYCPDHESRRLDPFSLVS 162
            WFCEKC+    N+                        PIA   C FC    GAMK +   R W HV+C  +  E +F+DP+ +  +          RT LC IC    G    C  P C    HA CA   GL + +D +      + YC  H +R +D  + +S
Sbjct:  218 WFCEKCE----NN------------------------PIASRKCVFCPYKGGAMKQTTCGR-WAHVICTMWLGEVYFKDPDIMKNISGVDRCLRDRRTLLCFICKKKYGACTQCSSPSCALAYHATCAAFAGLYIKVDETGDDIKRISYCVKHTNRNIDSDNRIS 353          
BLAST of EWM29883.1 vs. NCBI_GenBank
Match: gi|661890566|emb|CDP06063.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 67.0106 bits (162), Expect = 3.192e-9
Identity = 46/133 (34.59%), Postives = 54/133 (40.60%), Query Frame = 0
Query:    2 WFCEKCKWEKANDFKSAAATPPLEAGASASITPTSFPPIACHFCGQTSGAMKGSRDKRLWGHVVCVRFDPEAFFQDPN-RLAVLVFHRFKTSPSR--TKLCGICHDAGGLTVPCPWPECKTQVHARCAHRHGL 131
            WFC KC           A+  P     S  I P S     C  C  T GA+K + DK  W H+VC  F PEAFF DP  R  + V       P R   + C IC    G  + C  P C    H  CA +  L
Sbjct:  185 WFCAKC----------LASQSPYRTNTSNHIKPFS-----CCLCPVTGGALKPTTDKGKWAHLVCALFVPEAFFSDPEGREGIDV----TKVPDRRWNQKCYICKSKNGCAIDCSEPRCPLAFHVTCALKENL 298          
BLAST of EWM29883.1 vs. NCBI_GenBank
Match: gi|697142795|ref|XP_009625501.1| (PREDICTED: protein Jade-1 [Nicotiana tomentosiformis] >gi|1025067141|ref|XP_016451094.1| PREDICTED: protein Jade-1-like [Nicotiana tabacum])

HSP 1 Score: 65.4698 bits (158), Expect = 8.015e-9
Identity = 34/95 (35.79%), Postives = 47/95 (49.47%), Query Frame = 0
Query:   39 PIACHFCGQTSGAMKGSRDKRLWGHVVCVRFDPEAFFQDPNRLAVLVFHRFKTSPSR--TKLCGICHDAGGLTVPCPWPECKTQVHARCAHRHGL 131
            PI C+ C +TSGA+K + ++  W HVVC  F PE FF DP     + F +    P R   + C IC    G  + C  P+C    H  C  ++ L
Sbjct:  179 PITCYLCPETSGALKPTVNEGKWAHVVCALFVPEVFFVDPEGREGIDFSKV---PKRRWEQKCYICKSRNGCAIDCSEPKCPLSFHVTCGLKNEL 270          
BLAST of EWM29883.1 vs. NCBI_GenBank
Match: gi|669315331|gb|KFD58779.1| (hypothetical protein M513_00472 [Trichuris suis] >gi|669331896|gb|KFD72064.1| hypothetical protein M514_00472 [Trichuris suis])

HSP 1 Score: 64.6994 bits (156), Expect = 2.774e-8
Identity = 37/113 (32.74%), Postives = 52/113 (46.02%), Query Frame = 0
Query:   41 ACHFCGQTSGAMKGSRDKRLWGHVVCVRFDPEAFFQDPNRLAVLVFHRFKTSPSRTKLCGICHDAGGLTVPCPWPECKTQVHARCAHRHGLVHLDASFGHALPL-IYCPDHES 152
            AC FC +  GAMK  +  ++W HV C  + PE  F D +++  L F + K +     +C IC    G+T+ C    C  + HA CA   G           + L  YCP H S
Sbjct:  215 ACGFCSRHFGAMKFDQTLQMWYHVSCALWLPEVRFHDWSKMRGLYFVKPKWN---MYVCSICRRMNGMTIQCKAKSCMVRYHASCAQEAGYKMDYVLLDKNVQLKSYCPQHRS 324          
BLAST of EWM29883.1 vs. NCBI_GenBank
Match: gi|674590203|emb|CDS30868.1| (PHD finger protein rhinoceros [Hymenolepis microstoma])

HSP 1 Score: 63.929 bits (154), Expect = 4.367e-8
Identity = 34/114 (29.82%), Postives = 50/114 (43.86%), Query Frame = 0
Query:   40 IACHFCGQTSGAMKGSRDKRLWGHVVCVRFDPEAFFQDPNRLAVLVFHRFKTSPSRTKLCGICHDAGGLTVPCPWPECKTQVHARCAHRHGLV-HLDASFGHALPLIYCPDHES 152
            I C  C    GAMK  +D   W HV C  + P   F+DP  + ++         +R  LC +C    G+T+ C    C+ + H  CA+  GLV  + +   H     +C  H S
Sbjct:  204 IKCDLCPFRGGAMKPFKDSTDWAHVSCALWIPAIMFEDPVNMELITGRNAIPLEARVSLCDLCRIPQGITIKCCINGCRGRFHVTCAYDQGLVMDIHSVDAHVRFFAFCRKHSS 317          
BLAST of EWM29883.1 vs. NCBI_GenBank
Match: gi|196012423|ref|XP_002116074.1| (hypothetical protein TRIADDRAFT_30335 [Trichoplax adhaerens] >gi|190581397|gb|EDV21474.1| hypothetical protein TRIADDRAFT_30335, partial [Trichoplax adhaerens])

HSP 1 Score: 62.3882 bits (150), Expect = 7.240e-8
Identity = 31/94 (32.98%), Postives = 45/94 (47.87%), Query Frame = 0
Query:   41 ACHFCGQTSGAMKGSRDKRLWGHVVCVRFDPEAFFQDPNRLAVLVFHRFKTSPSRTKLCGICHDAGGLTVPCPWPECKTQVHARCAHRHGLVHL 134
            +C FC   SGAMK ++D   WGHV C  + PE    +P ++  +       +   T LC +C +  G  + C  P C    H  CA + GLV +
Sbjct:  184 SCIFCPHKSGAMKKTQDGSRWGHVSCALWIPETRMGNPEKMQPITRVNRIPASRWTLLCCLCQEKYGACIQCSVPSCTVSFHVTCAIKKGLVMV 277          
The following BLAST results are available for this feature:
BLAST of EWM29883.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112465|gb|EWM29883.1|0.000e+0100.00hypothetical protein Naga_100106g18 [Nannochlorops... [more]
gi|553182797|ref|XP_005853786.1|5.970e-17100.00hypothetical protein NGA_2069200, partial [Nannoch... [more]
gi|403359825|gb|EJY79569.1|1.284e-931.50Protein Jade-3 (macronuclear) [Oxytricha trifallax... [more]
gi|678334882|emb|CDW76823.1|1.546e-925.48phd zinc finger-containing protein [Stylonychia le... [more]
gi|685833163|emb|CEF68084.1|1.954e-929.70Zinc finger, PHD-type domain and Zinc finger, FYVE... [more]
gi|661890566|emb|CDP06063.1|3.192e-934.59unnamed protein product [Coffea canephora][more]
gi|697142795|ref|XP_009625501.1|8.015e-935.79PREDICTED: protein Jade-1 [Nicotiana tomentosiform... [more]
gi|669315331|gb|KFD58779.1|2.774e-832.74hypothetical protein M513_00472 [Trichuris suis] >... [more]
gi|674590203|emb|CDS30868.1|4.367e-829.82PHD finger protein rhinoceros [Hymenolepis microst... [more]
gi|196012423|ref|XP_002116074.1|7.240e-832.98hypothetical protein TRIADDRAFT_30335 [Trichoplax ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna804rna804Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications