rna8038, rna8038 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8038
Unique Name	rna8038
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2451
Alignment location	KK037247.1:412592..413949 -

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Properties


Property Name	Value
Product	proteasome subunit beta type 5
Orig transcript id	gnl\|cribi\|Naga_100023g26.3964.mrna
Orig protein id	gnl\|cribi\|Naga_100023g26.3964
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:412592..413949 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100023g26	gene7782	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22648.1	cds8016	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8038	rna8038-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:412592..413949-
coding sequence from alignment at KK037247.1:412592..413949-

mRNA sequence

>rna8038 ID=rna8038|Name=rna8038|organism=Nannochloropsis gaditana|type=mRNA|length=2451bp
CGTAGCAGCGCCTTTCGAATCGCTGAACGCATGTAGTAAGCTCCCAACAG
CCGGTGCTTCGAGGGCAGCCCCCAGAAGTCCAGAGCTCAACAGTTCTGGT
CCTCAATAACCATGAACGCTTTTCAATGTAAGGGACGCAGCGAGCTGTGA
ACTTGCTTGGTGCTCGTGAAGGAGCGAGAGAAGGGGCCATAAATTCCGTC
CAGCATGGTGCCTCTCGTGAGGAGATGCGATGCTTAGCCTAGTTTCAAGT
CTTTTTGCTTTGCTTGGGTTCCATCGCGAAATGCATCTCGAAAAAAATAG
TCATCGATGTCGGGGAATGTCTCTATCTACAGGAAAGAAAACATGGAACG
TACGACGAGCATCCGCTACTTCGGAAAAGTCAAAGCGTCGGCCCAGCTTC
CATGATAATGAAAGGTAGTGATAGTCGTGGTCAGAGTAGCGGTACTAGAG
GCCCTAGGGTCGAACATGAGCTGCGCATTTGTCAGGATGGGATGGCGGCA
AGAGGGAGGAGGCGGAGGCGAGGCAGGAGGGTCGATCCGCACGCTTTCGA
GCGCCAACTTGAGGAGCAGCGGCGGAGGCAGCAAGCAGCAGGGGAGGGAG
GAGGGGTAAAAACGAAAGGAGGAGATGGAGAGGAAAAAATCGAAGAACCG
GTAGTCAATAGTGAAGAAGCCGGGATGGACGCAGGACCCGCTTCTTCCCC
TTGCGCCGCACCGCCGTCATCATTAGCTATTTCTGACAACGGATATCGTC
CTGGACTGAGACGTGGCCGTCAGCCAGTAATCCGAGGATATTACTTTGAC
GAAGGTTGTGGACGGTACTTTCGACTTGAGCAGTCATCCCTGCGAGGGTC
CCTTCCAAGCAGACAAGCGCGGATCCCGCCCGAGAAGCCATCACCGCCAC
CAAGGACGCCGCAGCTGTCGCGTGGTCCGCCGCAAAATATCTACCGGCGG
TTGAGGCTGCGGGAAGGGCAGCGCGGGCGGCGCTTTCACATGGGCGATTT
GGGTGGGCTCTTGCGCCTGAGTGCCGCCGGAGCCGTCCTGGGCCAGGACT
CGACACTGGAGGACGTGGACGTGATGAGAGGGTGGGTGGCGACAGGCGCC
AGGAACGGAACGCTCTGTCTCAGCCATCTGTCGCAAGGCGAGCATTTTCA
GACGGGCATTTTGAGCCTTGCCTCTTCCATCACCAGGGTCCGCTGGCGCG
ACGACAGGAGGTGGGGGCAAAGCCACGCCCTCCCCGGCCTCCTGGCTGTC
GCCGAGACGGGAGCGAGCGCGGGCTCGGGAGGAGGGGCGGCCGCCGTAAC
GGTCTGTGCGCTTCGAGGCGAGAGCTACGACGGGTCGACGCTAGAGGAGT
GCACGGCGTTGGCGTCGACCCGCTTCTTGCTGGGATCGCGCGACCTGTGG
GGCGTCGAGTGGGACCACGTCGCGGGGCGGCGCCTTCTGCCAGGCCTCTC
CCCGGGGCCCCTGGTCGTCTTGGACCTGGAGGCTCGCCGGCAGCTCAGGC
ACCCCTTCTCCCTAGCCAGTGATTGCTTCGCCTCCCACTGGAGCCCCGGC
GGCGCGGAGGACCGCCCTGTCTTCTTAGGCCTGCGCAACGGCCAAGTACA
GCGAGTAGACCTGCGGTCAGGCGCCACGTCCTCCAGGCCGCTGACTCGCA
TGGGCTGCTTGGTGGATCAGCTCGAGCTGCTGCACGACGAGCGAAGGCTG
GCGGTGAGCGACCGGCTGGGAGCTATTCGGCTGCTAGACCTGCGCTTTGC
CACTTCCCGGGGTCTGTGCGACATCCCTCCTACCTCAAGCAGGCCCGCAA
GCACGGGCTTCGTCCTCGATCCGCACGATGGAACCCTCTGCATGACCATG
ACTCCCGATGGCTCCCTCCTCTCGTACGACTTGAAAGCCTCTGAGCCAGG
GGAGCAAGGGGGGCGGGCCCATCTCCTCGGCTCCCTGACCGCCCACGCGC
CTTCGTCCCATCCGGCCCCGCCTCGCCACTTCCTGAGCCGTCGTTGGGAA
TGCTCGGTGGGTTTCGGCGCGCTTCCAGCCCAGGAAATCCCCGGGGTGTT
TGACAATCAAGATAAAGATGCGCTGTTGCCAATTTTGGTGTCCGGAGACC
GCACTTCGGGCAAACTGATGCGGCTTCGGCTGCAGCGAGAGGATGGGGAC
TGTCCGAGGGAAAGACATGAGTGAAAGAACTCTCAGGCCTGTGGTATGCG
GTAAGTAGATCGTTGATAGATATATCGAATTTTATTCACTGCTTTCTATG
CTTGAAATGTGCAATTTTTTCAAGATATTGTGTGATTGAAAGTGTAGATA
GCATGTCACAAGACCAGTAGCGAGGTTTTGAAAGCACCTTTTTTCATTTG
CTTTGAGACCCTGTGTCTCGTGTTTAGCCTACAAAAGGGACGAGTCCCGT
ATGTTTCCTTCTATGTTGGCCCCTGCACTTCGCCCGACACTCTTGGACCC
G

protein sequence of rna8038

>rna8038-protein ID=rna8038-protein|Name=rna8038|organism=Nannochloropsis gaditana|type=polypeptide|length=278bp
MHAIGTDILDLGKSLRAGGKRGAILSPHAKAEEAGFLLPAVEDPASFCKT
NFGVGYGTDQHQELKFAKGTTTLAFKFDGGIVVAVDSRSTQGAYVASGTV
KKVIEINPYLLGTMAGGAADCSFWERNLGIQCRLYELRHKERISVAAASK
LLANTVMQYRGYGLSMGTMITGWDKTGPQLFYVDNDGMRLKGNLFSVGSG
STYAYGVLDAHYRKDLSADEAIELGRRAIYHATHRDAYSGGIINVYHVQE
QGWVKVFSGDCNELHYKYQEEKTASMAM

mRNA from alignment at KK037247.1:412592..413949-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8038 ID=rna8038|Name=rna8038|organism=Nannochloropsis gaditana|type=mRNA|length=1358bp|location=Sequence derived from alignment at KK037247.1:412592..413949- (Nannochloropsis gaditana)
GCGTGTCCCCCTCCACCGTGATAAATTCGATGCCGTACTTTTTCTTCGAG
CCATGCGCTCATCGTGGCAGTTGTTGCAGTGCGGCACTGTGCTAGGCCGT
GACGGCAGGGGCGAGGGTCTCGCTGAAGCCCAAGACGAAGACGAAGAAGC
ACTCAATGCCGTGCTAGCCTTGCTGGGACCCTTTGTCCTGCCCGCGCTCA
CCCAGTGGATTCGTGAAAGAGTCTAACGAGAATTCTTTGCCCCTAGTACA
GCGCGGTGTCTATGTTTGTTGTACTCCAGAGCTTACGCATGAGAGATCAC
TAACTTCCTGCACCCCCTTACCGTGGACAGATAGCCCTTGCTTTACTTTG
CCTTTCCTTTCTTCCGAAATGCACGCCATTGGCACCGATATTTTGGATTT
GGGAAAATCCCTACGGGCTGGTGGAAAGCGAGGAGCGATATTGTCTCCAC
ATGCGAAGGCTGAGGAAGCAGGATTTCTCCTACCGGCCGTAGAGGACCCG
GCGTCGTTCTGCAAAACGAATTTTGGCGTCGGATATGGGACAGATCAACA
CCAGGAGCTGAAATTTGCAAAAGGAACCACAACGCTCGCATTCAAATTTG
ATGGAGGCATTGTTGTAGCCGTGGATTCTCGGTCAACGCAAGGCGCCTAT
GTAGCCTCGGGCACCGTCAAGAAAGTCATCGAGATCAACCCGTACCTGCT
CGGGACTATGGCAGGAGGTGCCGCAGATTGCTCTTTCTGGGAGAGAAATC
TGGGCATTCAGTGTCGTCTTTATGAACTGCGGCATAAGGAGCGCATATCG
GTGGCCGCAGCGTCCAAATTGTTGGCGAACACGGTAATGCAGTACCGAGG
CTACGGTTTGTCCATGGGCACCATGATCACGGGGTGGGACAAGACCGGGC
CCCAGCTCTTTTACGTGGACAACGACGGCATGCGGCTCAAGGGCAACCTC
TTTTCTGTGGGCTCGGGGTCTACATACGCCTATGGCGTGCTCGATGCGCA
CTACCGCAAGGATTTGAGCGCAGACGAGGCCATCGAGTTGGGCCGCCGCG
CCATCTACCATGCCACGCACCGAGATGCGTACTCTGGTGGAATCATTAAT
GTCTACCACGTGCAGGAGCAGGGGTGGGTCAAGGTATTCTCGGGGGACTG
TAACGAACTCCACTACAAGTATCAGGAGGAGAAGACGGCAAGCATGGCCA
TGTAAAGAAGGCGAACACGGGGAGGGGCGGGTCCAAGAGTGTCGGGCGAA
GTGCAGGGGCCAACATAGAAGGAAACATACGGGACTCGTCCCTTTTGTAG
GCTAAACACGAGACACAGGGTCTCAAAGCAAATGAAAAAAGGTGCTTTCA
AAACCTCG

Coding sequence (CDS) from alignment at KK037247.1:412592..413949-

>rna8038 ID=rna8038|Name=rna8038|organism=Nannochloropsis gaditana|type=CDS|length=837bp|location=Sequence derived from alignment at KK037247.1:412592..413949- (Nannochloropsis gaditana)
ATGCACGCCATTGGCACCGATATTTTGGATTTGGGAAAATCCCTACGGGC
TGGTGGAAAGCGAGGAGCGATATTGTCTCCACATGCGAAGGCTGAGGAAG
CAGGATTTCTCCTACCGGCCGTAGAGGACCCGGCGTCGTTCTGCAAAACG
AATTTTGGCGTCGGATATGGGACAGATCAACACCAGGAGCTGAAATTTGC
AAAAGGAACCACAACGCTCGCATTCAAATTTGATGGAGGCATTGTTGTAG
CCGTGGATTCTCGGTCAACGCAAGGCGCCTATGTAGCCTCGGGCACCGTC
AAGAAAGTCATCGAGATCAACCCGTACCTGCTCGGGACTATGGCAGGAGG
TGCCGCAGATTGCTCTTTCTGGGAGAGAAATCTGGGCATTCAGTGTCGTC
TTTATGAACTGCGGCATAAGGAGCGCATATCGGTGGCCGCAGCGTCCAAA
TTGTTGGCGAACACGGTAATGCAGTACCGAGGCTACGGTTTGTCCATGGG
CACCATGATCACGGGGTGGGACAAGACCGGGCCCCAGCTCTTTTACGTGG
ACAACGACGGCATGCGGCTCAAGGGCAACCTCTTTTCTGTGGGCTCGGGG
TCTACATACGCCTATGGCGTGCTCGATGCGCACTACCGCAAGGATTTGAG
CGCAGACGAGGCCATCGAGTTGGGCCGCCGCGCCATCTACCATGCCACGC
ACCGAGATGCGTACTCTGGTGGAATCATTAATGTCTACCACGTGCAGGAG
CAGGGGTGGGTCAAGGTATTCTCGGGGGACTGTAACGAACTCCACTACAA
GTATCAGGAGGAGAAGACGGCAAGCATGGCCATGTAA

Synonyms

Publications