rna8037, rna8037 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8037
Unique Name	rna8037
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1717
Alignment location	KK037247.1:410064..412722 +

Link to JBrowse

Properties


Property Name	Value
Product	WD40/YVTN repeat containing protein
Orig transcript id	gnl\|cribi\|Naga_100023g25.3993.mrna
Orig protein id	gnl\|cribi\|Naga_100023g25.3993
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:410064..412722 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100023g25	gene7781	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8037	rna8037-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22677.1	cds8015	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:410064..412722+
coding sequence from alignment at KK037247.1:410064..412722+

mRNA sequence

>rna8037 ID=rna8037|Name=rna8037|organism=Nannochloropsis gaditana|type=mRNA|length=1717bp
CTCCAGGAGTCTCGCCTTGACGGTGTGGTCGGTCGCTGATCCGGATTAAA
TACAAGCGCGCTCAGGGCATGTGGCAGAACAAGAATGGCAAATCCTCGGG
CCTCCTGCCTGGTCGCGAGAGTTTGGGACCTCTCTTTCTCATGGGAACGA
CCCCTATTTTCATTTTCATCACGTGGTTCACCATGCAGCATCTGGACGGA
GATTTTGGCAGGCTGATCGAGAGTTTCCGAGCGCATGGATGGGGCTACTT
AAAAATCATTGTGCCCTCGCCCTTTGATCCCACAGCCTGGAAGGTCATTC
TCTCCTACATGGCGGTGGAGTTGGCTTTCATGCGGCTCCTGCCCGGCAAG
ACCTTCAAAGCGACCGTGACGCCCGCAGGGAACGTGCCGGTCTACCGTGC
CAACGGTATGCAGGCGTACGCCGCCTCCCTCCTTCTCTTCTTCCTCCTAC
AGCGGTACGGCCCCGCCCACGGCCTGCATGTGTCCTGGGTCTACCACCAC
ATGGGAGAGCTCTTGTCGGCCATGAACGTCTTTTCGCTGGCCTTCTGTCT
CTTCCTCTTGGTCAAGGGCCTCACCTTCCCCTCCTCCTCAGACTCGGGCT
CCTCCGGCAACTGGGTGATCGACTTCTACTGGGGCACCGAGCTCTACCCG
CGCGTGCTGGGCTTCGACCTGAAAATGTTCACCAACTGCCGCTTCGGGAT
GATGTTTTGGGCGCTCGGCATCCTCTGCTACGCCCAGGCCCAGGCCGAGA
AGGACGGTTTTCTCTCTAACGCCATGCTCGTCAGCGTGCTCCTCCAGCTC
ATCTACATCACCAAGTTCTTCTACTGGGAGACGGGCTACCTCTGCTCCAT
GGACATCCAGCACGACCGCGCGGGCTACTACATCTGCTGGGGCTGCTTGG
TCTGGGTGCCTGCCGTCTACACTTCCCCCTCCTACTTCCTGGTCAACCAC
GGCGGCCGCGACATCGGCAGCCTCACTGCCCTCCTTCTCCTCTCGGCCGG
CGCTGCCTGCGTGGGGATCAACTACTGGGCTGACCGTCAGCGTCAGGTCT
TCCGCGCCTCGGACGGGAAGTGCAGCATCTGGGGCAAGCCTCCTGTCTTC
ATCACCGCCTCCTACACGACCGAGAAGGGCGAGAAGCGCTCCTCTATCCT
TCTCGCGTCAGGCTGGTGGGGTGTAGCGCGCCACTTTCACTACGTCCCAG
AGATTATGGGCGCTTTCTTATGGAGCTGCCCGGCAGGCTTCTACGGCCTT
CGCTTCTTTTTGGCCTACTTCTACGTGATTTTCTTGACCCCCCTCCTCTT
TGACCGGGCTTTCCGTGACGATGCCCGTTGCCGTGACAAGTATGGCAAGC
ATTGGGATAAATACTGCGCGCTTGTGCCTTACAAAATGATCCCTGGAATA
TTGTAAGCCTGGACAACCGTCTCGGCAAAGCTTCCGACCCCGCTCGCTTC
GTGCCCTCAATACGTCTGAGCTTCATGGTACCGCATATCTTAGCACATTG
GATGCGAAAAATTTCCATGGAGGAAAACGATAAACGTCAAAGTAATGCGG
AACAATTCAGTGCTTTGTTAGCGCCTGCACAGGATGCAGTCCTGGTAGAC
TCGCTTGTCTTGTCTAATTCGTCGGTGAAAGGACCGTTTCGCCGGATAAT
TGCGGCAATGGTCTTCCTACATTAAAGCTCCTTTGAAGCCTTATGACGGC
AAATATTCTTTTTTACT

protein sequence of rna8037

>rna8037-protein ID=rna8037-protein|Name=rna8037|organism=Nannochloropsis gaditana|type=polypeptide|length=590bp
MIMKGSDSRGQSSGTRGPRVEHELRICQDGMAARGRRRRRGRRVDPHAFE
RQLEEQRRRQQAAGEGGGVKTKGGDGEEKIEEPVVNSEEAGMDAGPASSP
CAAPPSSLAISDNGYRPGLRRGRQPVIRGYYFDEGCGRYFRLEQSSLRGS
LPSRQARIPPEKPSPPPRTPQLSRGPPQNIYRRLRLREGQRGRRFHMGDL
GGLLRLSAAGAVLGQDSTLEDVDVMRGWVATGARNGTLCLSHLSQGEHFQ
TGILSLASSITRVRWRDDRRWGQSHALPGLLAVAETGASAGSGGGAAAVT
VCALRGESYDGSTLEECTALASTRFLLGSRDLWGVEWDHVAGRRLLPGLS
PGPLVVLDLEARRQLRHPFSLASDCFASHWSPGGAEDRPVFLGLRNGQVQ
RVDLRSGATSSRPLTRMGCLVDQLELLHDERRLAVSDRLGAIRLLDLRFA
TSRGLCDIPPTSSRPASTGFVLDPHDGTLCMTMTPDGSLLSYDLKASEPG
EQGGRAHLLGSLTAHAPSSHPAPPRHFLSRRWECSVGFGALPAQEIPGVF
DNQDKDALLPILVSGDRTSGKLMRLRLQREDGDCPRERHE

mRNA from alignment at KK037247.1:410064..412722+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8037 ID=rna8037|Name=rna8037|organism=Nannochloropsis gaditana|type=mRNA|length=2659bp|location=Sequence derived from alignment at KK037247.1:410064..412722+ (Nannochloropsis gaditana)
CGTAGCAGCGCCTTTCGAATCGCTGAACGCATGTAGTAAGCTCCCAACAG
CCGGTGCTTCGAGGGCAGCCCCCAGAAGTCCAGAGCTCAACAGTTCTGGT
CCTCAATAACCATGAACGCTTTTCAATGTAAGGGACGCAGCGAGCTGTGA
ACTTGCTTGGTGCTCGTgaaggagcgagagaagGGGCCATAAATTCCGTC
CAGCATGGTGCCTCTCGTGAGGAGATGCGATGCTTAGCCTAGTTTCAAGT
CTTTTTGCTTTGCTTGGGTTCCATCGCGAAATGCATCTCGAAAAAAATAG
TCATCGATGTCGGGGAATGTCTCTATCTACAGGTAACATCATCTGTAGCG
CAATACTTCCGCTTCTCGTAGGCATGAAATTGAAGTCTAAGGAAGTCTCC
GTTTCCAACATAGGAAAGAAAACATGGAACGTACGACGAGCATCCGCTAC
TTCGGAAAAGTCAAAGCGTCGGCCCAGCTTCCATGATAATGAAAGGTAGT
GATAGTCGTGGTCAGAGTAGCGGTACTAGAGGCCCTAGGGTCGAACATGA
GCTGCGCATTTGTCAGGATGGGATGgcggcaagagggaggaggcggaggc
gaggcaggagggtCGATCCGCACGCTTTCGAGCGCCAACTTGAGGAGcag
cggcggaggcagcaagcagcaggggagggaggaggggtaaaaacgaaagg
aggagatggagaggaaaaaatCGAAGAACCGGTAGTCAATAGTGAAGAAG
CCGGGATGGACGCAGgacccgcttcttccccttgcgcCGCACCGCCGTCA
TCATTAGCTATTTCTGACAACGGATATCGTCCTGGACTGAGACGTGGCCG
TCAGCCAGTAATCCGAGGTAAGTTAAGGCGGCACATGAGCAAAATTCGGT
GCTCACTTTGAGACTTGGCCCAAAAGGTATACTCTTAATTGGGGGTCCTT
CTCGTGAATTGCTCACGTTTCCAACATCTCAACGGTCTTGGCAGGATATT
ACTTTGACGAAGGTTGTGGACGGTACTTTCGACTTGAGCAGTCATCCCTG
CGAGGGTCCCTTCCAAGCAGACAAGCGCGGATCCCGCCCGAGAAGCCATC
ACCGCCACCAAGGACGCCGCAGCTGTCGCGTGGTCCGCCGCAAAATATCT
ACCGGCGGTTGAGGCTGCGGGAAGGGCAGCGCGGGCGGCGCTTTCACATG
GGCGATTTGGGTGGGCTCTTGCGCCTGAGTGCCGCCGGAGCCGTCCTGGG
CCAGGACTCGACactggaggacgtggacgtgaTGAGAGGGTGGGTGGCGA
CAGGCGCCAGGAACGGAACGCTCTGTCTCAGCCATCTGTCGCAAGGCGAG
CATTTTCAGACGGGCATTTTGAGCCTTGCCTCTTCCATCACCAGGGTCCG
CTGGCGCGACgacaggaggtgggggcaaagccacgccctccccggcctcc
tgGCTGTCGCCGAGACGGGAGCGAGCGCGGgctcgggaggaggggcggcc
gCCGTAACGGTCTGTGCGCTTCGAGGCGAGAGCTACGACGGGTCGACGCT
AGAGGAGTGCACGGCGTTGGCGTCGACCCGCTTCTTGCTGGGATCGCGCG
ACCTGTGGGGCGTCGAGTGGGACCACGTCGCGGGGCGGCGCCTTCTGCCA
GGCCTCTCCCCGGGGCCCCTGGTCGTCTTGGACCTGGAGGCTCGCCGGCA
GCTCAGGCACCCCTTCTCCCTAGCCAGTGATTGCTTCGCCTCCCACTGGA
GCCCCGGCGGCGCGGAGGACCGCCCTGTCTTCTTAGGCCTGCGCAACGGC
CAAGTACAGCGAGTAGACCTGCGGTCAggcgccacgtcctccaggccgCT
GACTCGCATGGGCTGCTTGGTGGATCAGCTCGAGCTGCTGCACGACGAGC
GAAGGCTGGCGGTGAGCGACCGGCTGGGAGCTATTCGGCTGCTAGACCTG
CGCTTTGCCACTTCCCGGGGTCTGTGCGACATCCCTCCTACCTCAAGCAG
GCCCGCAAGCACGGGCTTCGTCCTCGATCCGCACGATGGAACCCTCTGCA
TGACCATGACTCCCGatggctccctcctctcgtaCGACTTGAAAGCCTCT
GAGCCaggggagcaaggggggcgggcccaTCTCCTCGGCTCCCTGACCGC
CCACGCGCCTTCGTCCCATCCGGCCCCGCCTCGCCACTTCCTGAGCCGTC
GTTGGGAATGCTCGGTGGGTTTCGGCGCGCTTCCAGCCCAGGAAATCCCC
GGGGTGTTTGACAATCAAGATAAAGATGCGCTGTTGCCAATTTTGGTGTC
CGGAGACCGCACTTCGGGCAAACTGATGCGGCTTCGGCTGCAGCGAGAGG
ATGGGGACTGTCCGAGGGAAAGACATGAGTGAAAGAACTCTCAGGCCTGT
GGTATGCGGTAAGTAGATCGTTGATAGATATATCGAATTTTATTCACTGC
TTTCTATGCTTGAAATGTGCAATTTTTTCAAGATATTGTGTGATTGAAAG
TGTAGATAGCATGTCACAAGACCAGTAGCGAGGTTTTGAAAGCACCTTTT
TTCATTTGCTTTGAGACCCTGTGTCTCGTGTTTAGCCTACAAAAGGGACG
AGTCCCGTATGTTTCCTTCTATGTTGGCCCCTGCACTTCGCCCGACACTC
TTggacccg

Coding sequence (CDS) from alignment at KK037247.1:410064..412722+

>rna8037 ID=rna8037|Name=rna8037|organism=Nannochloropsis gaditana|type=CDS|length=3546bp|location=Sequence derived from alignment at KK037247.1:410064..412722+ (Nannochloropsis gaditana)
ATGATAATGAAAGGTAGTGATAGTCGTGGTCAGAGTAGCGGTACTAGAGG
CCCTAGGGTCGAACATGAGCTGCGCATTTGTCAGGATGGGATGgcggcaa
gagggaggaggcggaggcgaggcaggagggtCGATCCGCACGCTTTCGAG
CGCCAACTTGAGGAGcagcggcggaggcagcaagcagcaggggagggagg
aggggtaaaaacgaaaggaggagatggagaggaaaaaatCGAAGAACCGG
TAGTCAATAGTGAAGAAGCCGGGATGGACGCAGgacccgcttcttcccct
tgcgcCGCACCGCCGTCATCATTAGCTATTTCTGACAACGGATATCGTCC
TGGACTGAGACGTGGCCGTCAGCCAGTAATCCGAGGATATTACTTTGACG
AAGGTTGTGGACGGTACTTTCGACTTGAGCAGTCATCCCTGCGAGGGTCC
CTTCCAAGCAGACAAGCGCGGATCCCGCCCGAGAAGCCATCACCGCCACC
AAGGACGCCGCAGCTGTCGCGTGGTCCGCCGCAAAATATCTACCGGCGGT
TGAGGCTGCGGGAAGGGCAGCGCGGGCGGCGCTTTCACATGGGCGATTTG
GGTGGGCTCTTGCGCCTGAGTGCCGCCGGAGCCGTCCTGGGCCAGGACTC
GACactggaggacgtggacgtgaTGAGAGGGTGGGTGGCGACAGGCGCCA
GGAACGGAACGCTCTGTCTCAGCCATCTGTCGCAAGGCGAGCATTTTCAG
ACGGGCATTTTGAGCCTTGCCTCTTCCATCACCAGGGTCCGCTGGCGCGA
CgacaggaggtgggggcaaagccacgccctccccggcctcctgGCTGTCG
CCGAGACGGGAGCGAGCGCGGgctcgggaggaggggcggccgCCGTAACG
GTCTGTGCGCTTCGAGGCGAGAGCTACGACGGGTCGACGCTAGAGGAGTG
CACGGCGTTGGCGTCGACCCGCTTCTTGCTGGGATCGCGCGACCTGTGGG
GCGTCGAGTGGGACCACGTCGCGGGGCGGCGCCTTCTGCCAGGCCTCTCC
CCGGGGCCCCTGGTCGTCTTGGACCTGGAGGCTCGCCGGCAGCTCAGGCA
CCCCTTCTCCCTAGCCAGTGATTGCTTCGCCTCCCACTGGAGCCCCGGCG
GCGCGGAGGACCGCCCTGTCTTCTTAGGCCTGCGCAACGGCCAAGTACAG
CGAGTAGACCTGCGGTCAggcgccacgtcctccaggccgCTGACTCGCAT
GGGCTGCTTGGTGGATCAGCTCGAGCTGCTGCACGACGAGCGAAGGCTGG
CGGTGAGCGACCGGCTGGGAGCTATTCGGCTGCTAGACCTGCGCTTTGCC
ACTTCCCGGGGTCTGTGCGACATCCCTCCTACCTCAAGCAGGCCCGCAAG
CACGGGCTTCGTCCTCGATCCGCACGATGGAACCCTCTGCATGACCATGA
CTCCCGatggctccctcctctcgtaCGACTTGAAAGCCTCTGAGCCaggg
gagcaaggggggcgggcccaTCTCCTCGGCTCCCTGACCGCCCACGCGCC
TTCGTCCCATCCGGCCCCGCCTCGCCACTTCCTGAGCCGTCGTTGGGAAT
GCTCGGTGGGTTTCGGCGCGCTTCCAGCCCAGGAAATCCCCGGGGTGTTT
GACAATCAAGATAAAGATGCGCTGTTGCCAATTTTGGTGTCCGGAGACCG
CACTTCGGGCAAACTGATGCGGCTTCGGCTGCAGCGAGAGGATGGGGACT
GTCCGAGGGAAAGACATGAGTGAATGATAATGAAAGGTAGTGATAGTCGT
GGTCAGAGTAGCGGTACTAGAGGCCCTAGGGTCGAACATGAGCTGCGCAT
TTGTCAGGATGGGATGgcggcaagagggaggaggcggaggcgaggcagga
gggtCGATCCGCACGCTTTCGAGCGCCAACTTGAGGAGcagcggcggagg
cagcaagcagcaggggagggaggaggggtaaaaacgaaaggaggagatgg
agaggaaaaaatCGAAGAACCGGTAGTCAATAGTGAAGAAGCCGGGATGG
ACGCAGgacccgcttcttccccttgcgcCGCACCGCCGTCATCATTAGCT
ATTTCTGACAACGGATATCGTCCTGGACTGAGACGTGGCCGTCAGCCAGT
AATCCGAGGATATTACTTTGACGAAGGTTGTGGACGGTACTTTCGACTTG
AGCAGTCATCCCTGCGAGGGTCCCTTCCAAGCAGACAAGCGCGGATCCCG
CCCGAGAAGCCATCACCGCCACCAAGGACGCCGCAGCTGTCGCGTGGTCC
GCCGCAAAATATCTACCGGCGGTTGAGGCTGCGGGAAGGGCAGCGCGGGC
GGCGCTTTCACATGGGCGATTTGGGTGGGCTCTTGCGCCTGAGTGCCGCC
GGAGCCGTCCTGGGCCAGGACTCGACactggaggacgtggacgtgaTGAG
AGGGTGGGTGGCGACAGGCGCCAGGAACGGAACGCTCTGTCTCAGCCATC
TGTCGCAAGGCGAGCATTTTCAGACGGGCATTTTGAGCCTTGCCTCTTCC
ATCACCAGGGTCCGCTGGCGCGACgacaggaggtgggggcaaagccacgc
cctccccggcctcctgGCTGTCGCCGAGACGGGAGCGAGCGCGGgctcgg
gaggaggggcggccgCCGTAACGGTCTGTGCGCTTCGAGGCGAGAGCTAC
GACGGGTCGACGCTAGAGGAGTGCACGGCGTTGGCGTCGACCCGCTTCTT
GCTGGGATCGCGCGACCTGTGGGGCGTCGAGTGGGACCACGTCGCGGGGC
GGCGCCTTCTGCCAGGCCTCTCCCCGGGGCCCCTGGTCGTCTTGGACCTG
GAGGCTCGCCGGCAGCTCAGGCACCCCTTCTCCCTAGCCAGTGATTGCTT
CGCCTCCCACTGGAGCCCCGGCGGCGCGGAGGACCGCCCTGTCTTCTTAG
GCCTGCGCAACGGCCAAGTACAGCGAGTAGACCTGCGGTCAggcgccacg
tcctccaggccgCTGACTCGCATGGGCTGCTTGGTGGATCAGCTCGAGCT
GCTGCACGACGAGCGAAGGCTGGCGGTGAGCGACCGGCTGGGAGCTATTC
GGCTGCTAGACCTGCGCTTTGCCACTTCCCGGGGTCTGTGCGACATCCCT
CCTACCTCAAGCAGGCCCGCAAGCACGGGCTTCGTCCTCGATCCGCACGA
TGGAACCCTCTGCATGACCATGACTCCCGatggctccctcctctcgtaCG
ACTTGAAAGCCTCTGAGCCaggggagcaaggggggcgggcccaTCTCCTC
GGCTCCCTGACCGCCCACGCGCCTTCGTCCCATCCGGCCCCGCCTCGCCA
CTTCCTGAGCCGTCGTTGGGAATGCTCGGTGGGTTTCGGCGCGCTTCCAG
CCCAGGAAATCCCCGGGGTGTTTGACAATCAAGATAAAGATGCGCTGTTG
CCAATTTTGGTGTCCGGAGACCGCACTTCGGGCAAACTGATGCGGCTTCG
GCTGCAGCGAGAGGATGGGGACTGTCCGAGGGAAAGACATGAGTGA

Synonyms

Publications