EWM22677.1, cds8015 (CDS) Nannochloropsis gaditana

Overview
NameEWM22677.1
Unique Namecds8015
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:410546..410930 +
Alignment locationKK037247.1:411058..412445 +

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Properties
Property NameValue
Protein idEWM22677.1
ProductWD40/YVTN repeat containing protein
Orig transcript idgnl|cribi|Naga_100023g25.3993.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:410546..410930 +
KK037247.1supercontigKK037247.1:411058..412445 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
Homology
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BLAST of EWM22677.1 vs. NCBI_GenBank
Match: gi|585103242|gb|EWM22677.1| (WD40/YVTN repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1172.15 bits (3031), Expect = 0.000e+0
Identity = 590/590 (100.00%), Postives = 590/590 (100.00%), Query Frame = 0 
Query:    1 MIMKGSDSRGQSSGTRGPRVEHELRICQDGMAARGRRRRRGRRVDPHAFERQLEEQRRRQQAAGEGGGVKTKGGDGEEKIEEPVVNSEEAGMDAGPASSPCAAPPSSLAISDNGYRPGLRRGRQPVIRGYYFDEGCGRYFRLEQSSLRGSLPSRQARIPPEKPSPPPRTPQLSRGPPQNIYRRLRLREGQRGRRFHMGDLGGLLRLSAAGAVLGQDSTLEDVDVMRGWVATGARNGTLCLSHLSQGEHFQTGILSLASSITRVRWRDDRRWGQSHALPGLLAVAETGASAGSGGGAAAVTVCALRGESYDGSTLEECTALASTRFLLGSRDLWGVEWDHVAGRRLLPGLSPGPLVVLDLEARRQLRHPFSLASDCFASHWSPGGAEDRPVFLGLRNGQVQRVDLRSGATSSRPLTRMGCLVDQLELLHDERRLAVSDRLGAIRLLDLRFATSRGLCDIPPTSSRPASTGFVLDPHDGTLCMTMTPDGSLLSYDLKASEPGEQGGRAHLLGSLTAHAPSSHPAPPRHFLSRRWECSVGFGALPAQEIPGVFDNQDKDALLPILVSGDRTSGKLMRLRLQREDGDCPRERHE 590
            MIMKGSDSRGQSSGTRGPRVEHELRICQDGMAARGRRRRRGRRVDPHAFERQLEEQRRRQQAAGEGGGVKTKGGDGEEKIEEPVVNSEEAGMDAGPASSPCAAPPSSLAISDNGYRPGLRRGRQPVIRGYYFDEGCGRYFRLEQSSLRGSLPSRQARIPPEKPSPPPRTPQLSRGPPQNIYRRLRLREGQRGRRFHMGDLGGLLRLSAAGAVLGQDSTLEDVDVMRGWVATGARNGTLCLSHLSQGEHFQTGILSLASSITRVRWRDDRRWGQSHALPGLLAVAETGASAGSGGGAAAVTVCALRGESYDGSTLEECTALASTRFLLGSRDLWGVEWDHVAGRRLLPGLSPGPLVVLDLEARRQLRHPFSLASDCFASHWSPGGAEDRPVFLGLRNGQVQRVDLRSGATSSRPLTRMGCLVDQLELLHDERRLAVSDRLGAIRLLDLRFATSRGLCDIPPTSSRPASTGFVLDPHDGTLCMTMTPDGSLLSYDLKASEPGEQGGRAHLLGSLTAHAPSSHPAPPRHFLSRRWECSVGFGALPAQEIPGVFDNQDKDALLPILVSGDRTSGKLMRLRLQREDGDCPRERHE
Sbjct:    1 MIMKGSDSRGQSSGTRGPRVEHELRICQDGMAARGRRRRRGRRVDPHAFERQLEEQRRRQQAAGEGGGVKTKGGDGEEKIEEPVVNSEEAGMDAGPASSPCAAPPSSLAISDNGYRPGLRRGRQPVIRGYYFDEGCGRYFRLEQSSLRGSLPSRQARIPPEKPSPPPRTPQLSRGPPQNIYRRLRLREGQRGRRFHMGDLGGLLRLSAAGAVLGQDSTLEDVDVMRGWVATGARNGTLCLSHLSQGEHFQTGILSLASSITRVRWRDDRRWGQSHALPGLLAVAETGASAGSGGGAAAVTVCALRGESYDGSTLEECTALASTRFLLGSRDLWGVEWDHVAGRRLLPGLSPGPLVVLDLEARRQLRHPFSLASDCFASHWSPGGAEDRPVFLGLRNGQVQRVDLRSGATSSRPLTRMGCLVDQLELLHDERRLAVSDRLGAIRLLDLRFATSRGLCDIPPTSSRPASTGFVLDPHDGTLCMTMTPDGSLLSYDLKASEPGEQGGRAHLLGSLTAHAPSSHPAPPRHFLSRRWECSVGFGALPAQEIPGVFDNQDKDALLPILVSGDRTSGKLMRLRLQREDGDCPRERHE 590
The following BLAST results are available for this feature:
BLAST of EWM22677.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585103242|gb|EWM22677.1|0.000e+0100.00WD40/YVTN repeat containing protein [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8037rna8037Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications