rna8033, rna8033 (mRNA) Nannochloropsis gaditana

Overview
Namerna8033
Unique Namerna8033
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length555
Alignment locationKK037247.1:398410..399393 +

Link to JBrowse

Properties
Property NameValue
ProductRNA binding protein
Orig transcript idgnl|cribi|Naga_100023g20.3994.mrna
Orig protein idgnl|cribi|Naga_100023g20.3994
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:398410..399393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100023g20gene7777Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8033rna8033-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22678.1cds8011Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8033 ID=rna8033|Name=rna8033|organism=Nannochloropsis gaditana|type=mRNA|length=555bp
ATGCTTCCGCCCCAGCGACTAGCAGCACGCCCTACTCAATTGATGGCTCC
ACCACAGACCCGCCCTCGGACTGCCGTCACTCACGAGCCCATAGAGATCC
ATGGCCATAGTAGAAATTCAGCGACATCTAAAGGGGACACGATTATTCAC
GTGGATTGCGCAGATTTGCAAGAATTAGCCTTTAAAGGAGAGGCTTACGA
TCCAGCCAGACCAAATGATTATATGGAGTTTTGCAAGGAGCGTGAAAACA
GGGCAAAGGACGAAGAGCGTCAGAGGGAATATGAAAAGTTTCGAAAGGAA
CGCGAAGAAGAAATGCGCCGCGGTCGGAATACCCTCGCAGGCCTCCAATC
GTTGCCAAGTAATGGGGACAATCCAATGCCGGATAGTATAATGCCTGCAC
GCGGGCGTGGGCGTGGTGGTGTAAGCAATTTGCCCTCTTGGATGACCAAG
GGTGCGCCTGTGGAGGACAAGAATAGGTGCGTTGACACTTTGTCTGCGCT
CGAATCAGGAAAAACTCAATTTGCCGATGCACAAGTAAGTTTGGAATGCT
ACTGA
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protein sequence of rna8033

>rna8033-protein ID=rna8033-protein|Name=rna8033|organism=Nannochloropsis gaditana|type=polypeptide|length=171bp
MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDR
QQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGP
VSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQ
ASFFDEEKFARKDLAPGKEEC
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mRNA from alignment at KK037247.1:398410..399393+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8033 ID=rna8033|Name=rna8033|organism=Nannochloropsis gaditana|type=mRNA|length=984bp|location=Sequence derived from alignment at KK037247.1:398410..399393+ (Nannochloropsis gaditana)
ATGAAAAAGCTAGGCTACCAGGAAGGCGCGGGCCTGGGCCGGGATCGGCA
AGGTATCACAGAAGCCATCAAAGCCCGTGCTCTAGGTGGCGGAAAGGGAG
TGATCAGTGGACCTGCACAGGGCGGCAAAGGGTAAGGATTGTTTCCATTC
AAGAAGCGTGTCAGAAAATTGTTCTTacactttttttttaaagagAGTTA
TGTGGTGCTTCACAACACATTCTGGGAGCACAGTGCAATGATTAATATGT
TGCATACCCATTATGTAAAAATGACAATTGCATAAGCATTTTCCCAAGAA
GATTACAAAGTGGTTGCATTGATTTGACAAAGCTCTTTGCAGATAGGTTG
TTCTGTCTTCGTAGATTGATATATTTCATATCTCGATTCTAGAGCCCAAG
ATGTTGAcagacagcagcagcaaccgcaacccaaaaagaaaaagcgcgGC
CTCTTCAGCAATCCGACAAAAATCGTCCTGCTAAAAAATATGGTGGGACC
TGGAGAGGTGGACGATGACCTACAGGGCGAGACAGCGGAGGAATGTGCAA
AGCATGGGCCCGTGTCAGAGTGCTTGGTCTTTGAGGTAAAGAGAGTGAAA
TACAGTGGAAAAAAGACTCATGTCTTTGTAGGACAAATTTGTACATGGCC
AGATACCTTTGCGCTTCAGTTGTATAGTGACATGTATGATCTCTTGACTC
GGATTCTGTCTCAGCAAGTTGCACGTATTGTAAGCTTCTCCATTGCTTCA
TTTGTTTCAACCAcgcttcccaccctcttcacATATTTTAAGGTAAATGA
TAATTCATACCCTGAAGAGGAACGTGTTCGAACTTTCGTTGCTTTTGAAC
GTCAGGAAAGCGCGGTAAAGGCGTATGTGGCCATGAACGGTCGCTTTTTT
GGTGGTCGGCAAGTGCAAGCTTCATTTTTTGATGAAGAAAAATTTGCCCG
CAAAGACCTGGCGCCCGGAAAAGAAGAATGCTGA
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Coding sequence (CDS) from alignment at KK037247.1:398410..399393+

>rna8033 ID=rna8033|Name=rna8033|organism=Nannochloropsis gaditana|type=CDS|length=1548bp|location=Sequence derived from alignment at KK037247.1:398410..399393+ (Nannochloropsis gaditana)
ATGAAAAAGCTAGGCTACCAGGAAGGCGCGGGCCTGGGCCGGGATCGGCA
AGGTATCACAGAAGCCATCAAAGCCCGTGCTCTAGGTGGCGGAAAGGGAG
TGATCAGTGGACCTGCACAGGGCGGCAAAGGAGCCCAAGATGTTGAcaga
cagcagcagcaaccgcaacccaaaaagaaaaagcgcgGCCTCTTCAGCAA
TCCGACAAAAATCGTCCTGCTAAAAAATATGGTGGGACCTGGAGAGGTGG
ACGATGACCTACAGGGCGAGACAGCGGAGGAATGTGCAAAGCATGGGCCC
GTGTCAGAGTGCTTGGTCTTTGAGGTAAATGATAATTCATACCCTGAAGA
GGAACGTGTTCGAACTTTCGTTGCTTTTGAACGTCAGGAAAGCGCGGTAA
AGGCGTATGTGGCCATGAACGGTCGCTTTTTTGGTGGTCGGCAAGTGCAA
GCTTCATTTTTTGATGAAGAAAAATTTGCCCGCAAAGACCTGGCGCCCGG
AAAAGAAGAATGCTGAATGAAAAAGCTAGGCTACCAGGAAGGCGCGGGCC
TGGGCCGGGATCGGCAAGGTATCACAGAAGCCATCAAAGCCCGTGCTCTA
GGTGGCGGAAAGGGAGTGATCAGTGGACCTGCACAGGGCGGCAAAGGAGC
CCAAGATGTTGAcagacagcagcagcaaccgcaacccaaaaagaaaaagc
gcgGCCTCTTCAGCAATCCGACAAAAATCGTCCTGCTAAAAAATATGGTG
GGACCTGGAGAGGTGGACGATGACCTACAGGGCGAGACAGCGGAGGAATG
TGCAAAGCATGGGCCCGTGTCAGAGTGCTTGGTCTTTGAGGTAAATGATA
ATTCATACCCTGAAGAGGAACGTGTTCGAACTTTCGTTGCTTTTGAACGT
CAGGAAAGCGCGGTAAAGGCGTATGTGGCCATGAACGGTCGCTTTTTTGG
TGGTCGGCAAGTGCAAGCTTCATTTTTTGATGAAGAAAAATTTGCCCGCA
AAGACCTGGCGCCCGGAAAAGAAGAATGCTGAATGAAAAAGCTAGGCTAC
CAGGAAGGCGCGGGCCTGGGCCGGGATCGGCAAGGTATCACAGAAGCCAT
CAAAGCCCGTGCTCTAGGTGGCGGAAAGGGAGTGATCAGTGGACCTGCAC
AGGGCGGCAAAGGAGCCCAAGATGTTGAcagacagcagcagcaaccgcaa
cccaaaaagaaaaagcgcgGCCTCTTCAGCAATCCGACAAAAATCGTCCT
GCTAAAAAATATGGTGGGACCTGGAGAGGTGGACGATGACCTACAGGGCG
AGACAGCGGAGGAATGTGCAAAGCATGGGCCCGTGTCAGAGTGCTTGGTC
TTTGAGGTAAATGATAATTCATACCCTGAAGAGGAACGTGTTCGAACTTT
CGTTGCTTTTGAACGTCAGGAAAGCGCGGTAAAGGCGTATGTGGCCATGA
ACGGTCGCTTTTTTGGTGGTCGGCAAGTGCAAGCTTCATTTTTTGATGAA
GAAAAATTTGCCCGCAAAGACCTGGCGCCCGGAAAAGAAGAATGCTGA
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Synonyms
Publications