EWM22678.1, cds8011 (CDS) Nannochloropsis gaditana

Overview
NameEWM22678.1
Unique Namecds8011
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:398410..398540 +
Alignment locationKK037247.1:398802..398994 +
Alignment locationKK037247.1:399202..399393 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22678.1
ProductRNA binding protein
Orig transcript idgnl|cribi|Naga_100023g20.3994.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:398410..398540 +
KK037247.1supercontigKK037247.1:398802..398994 +
KK037247.1supercontigKK037247.1:399202..399393 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR016967Splicing_factor_SPF45
IPR012677Nucleotide-bd_a/b_plait
IPR000467G_patch_dom
IPR003954RRM_dom_euk
Homology
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|585103243|gb|EWM22678.1| (RNA binding protein [Nannochloropsis gaditana])

HSP 1 Score: 345.51 bits (885), Expect = 2.731e-120
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0
Query:    1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAPGKEEC 171
            MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAPGKEEC
Sbjct:    1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAPGKEEC 171          
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|695052912|ref|XP_009414530.1| (PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X2 [Musa acuminata subsp. malaccensis] >gi|1091782031|ref|XP_018686492.1| PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X2 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 164.466 bits (415), Expect = 3.680e-46
Identity = 80/169 (47.34%), Postives = 109/169 (64.50%), Query Frame = 0
Query:    1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAPGKE 169
            M K+G++EG GLG+  QGIT  + A+      GVI            V+  + +P  K K   L S+PT++VLL+NMVGPGEVDD+L+ E A EC K+G V+  L+FE+ + ++P +E VR FV FER E A KA + ++GRFFGGR V ASF+DEE+F   +LAP  E
Sbjct:  227 MAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVI------------VNASESKPDKKPKSVNLNSSPTRVVLLRNMVGPGEVDDELEDEVASECTKYGTVTRVLIFEITEANFPTDEAVRIFVQFERSEEATKALIDLDGRFFGGRVVHASFYDEERFGNNELAPMPE 383          
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|695052902|ref|XP_009414525.1| (PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Musa acuminata subsp. malaccensis] >gi|695052904|ref|XP_009414526.1| PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Musa acuminata subsp. malaccensis] >gi|695052906|ref|XP_009414527.1| PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Musa acuminata subsp. malaccensis] >gi|695052908|ref|XP_009414528.1| PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 163.696 bits (413), Expect = 6.707e-46
Identity = 79/166 (47.59%), Postives = 108/166 (65.06%), Query Frame = 0
Query:    1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAP 166
            M K+G++EG GLG+  QGIT  + A+      GVI            V+  + +P  K K   L S+PT++VLL+NMVGPGEVDD+L+ E A EC K+G V+  L+FE+ + ++P +E VR FV FER E A KA + ++GRFFGGR V ASF+DEE+F   +LAP
Sbjct:  227 MAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVI------------VNASESKPDKKPKSVNLNSSPTRVVLLRNMVGPGEVDDELEDEVASECTKYGTVTRVLIFEITEANFPTDEAVRIFVQFERSEEATKALIDLDGRFFGGRVVHASFYDEERFGNNELAP 380          
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|297740820|emb|CBI31002.3| (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 156.377 bits (394), Expect = 1.693e-45
Identity = 75/166 (45.18%), Postives = 108/166 (65.06%), Query Frame = 0
Query:    1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAP 166
            M K+G++EG GLG+  QGIT  + A+      GVI            V+  + +P+ K K     S PT+++LL+NMVGPGEVDD+L+ E   ECAK+G V+  L+FE+ + ++P +E VR FV FER E   KA V ++GRFFGGR V A+F+DE++F++ +LAP
Sbjct:    8 MAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVI------------VNASESKPEKKVKSVNFNSPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVHATFYDEDRFSKNELAP 161          
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|976914540|gb|KVI00717.1| (hypothetical protein Ccrd_021030 [Cynara cardunculus var. scolymus])

HSP 1 Score: 162.155 bits (409), Expect = 2.204e-45
Identity = 82/168 (48.81%), Postives = 112/168 (66.67%), Query Frame = 0
Query:    1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSN--PTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAP 166
            M K+G++ G GLG+  QGIT  + A+      GVI            V+  + + QP+KK RG+  N  PT++VLL+NMVGPGEVDDDL+ E AEECAK+G V+  L+FE+ + ++P +E VR FV FER E A KA V + GRFFGGR V+A+F++EE+F   +LAP
Sbjct:  215 MAKMGWKAGQGLGKQEQGITTPLMAKKTDRRAGVI------------VNASEPKQQPEKKPRGVNINGQPTRVVLLRNMVGPGEVDDDLETEVAEECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQATKALVDLEGRFFGGRVVRATFYEEERFNTNELAP 370          
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|226500638|ref|NP_001149001.1| (splicing factor 45 [Zea mays] >gi|195623866|gb|ACG33763.1| splicing factor 45 [Zea mays])

HSP 1 Score: 161.384 bits (407), Expect = 4.337e-45
Identity = 82/167 (49.10%), Postives = 107/167 (64.07%), Query Frame = 0
Query:    1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFS-NPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAP 166
            M K+G++EG GLG+  QGIT  + A+      GVI            VD    +P  KK +   F   PT+++LL+NMVGPGEVDD+L+ E A ECA++G VS  L+FE+    +P +E VR F+ FER E A KA V + GRFFGGR VQA+FFDEE+FAR +LAP
Sbjct:  220 MAKMGWKEGQGLGKQEQGITAPLVAKKTDRRGGVI------------VDESSSRPSEKKSRSVNFDGQPTRVLLLRNMVGPGEVDDELEDEVASECARYGTVSRVLIFEITQADFPSDEAVRIFIQFERAEEATKAMVDLQGRFFGGRVVQATFFDEERFARNELAP 374          
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|629110836|gb|KCW75796.1| (hypothetical protein EUGRSUZ_D00186 [Eucalyptus grandis])

HSP 1 Score: 160.999 bits (406), Expect = 4.884e-45
Identity = 77/166 (46.39%), Postives = 109/166 (65.66%), Query Frame = 0
Query:    1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAP 166
            M K+G++EG GLG+  QGIT  + A+      GVI            V+  + +P+ K K       PT++++L+NMVGPGEVDDDL+ E A ECAK+G V++ L+FE+ + ++P EE VR FV FER E   KA V +NGR+FGGR V A+F+DEE+F++ +LAP
Sbjct:  211 MAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVI------------VNASESKPEKKVKSVNFNGQPTRVLMLRNMVGPGEVDDDLEEEVASECAKYGTVTKVLIFEITEPNFPAEEAVRIFVQFERAEETTKALVDLNGRYFGGRVVHATFYDEERFSKNELAP 364          
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|1026026178|ref|XP_016559360.1| (PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Capsicum annuum])

HSP 1 Score: 160.999 bits (406), Expect = 5.048e-45
Identity = 81/166 (48.80%), Postives = 105/166 (63.25%), Query Frame = 0
Query:    1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAP 166
            M K+G++EG GLG+  QGIT  + A+      GVI             + +QQ P+ K K       PT++VLL+NMVGPGEVDDDL+GE AEEC K G V+  L+FE+ + ++P EE VR FV FER E A KA + + GRFFGGR V A F+DEE+F   +LAP
Sbjct:  210 MAKMGWKEGQGLGKLEQGITTPLMAKKTDKRGGVIVA----------SEAKQQPPEKKVKSVNFNMPPTRVVLLRNMVGPGEVDDDLEGEVAEECTKFGTVTRVLIFEITEANFPHEEAVRIFVQFERTEQATKALIELEGRFFGGRVVNACFYDEERFGNNELAP 365          
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|702316597|ref|XP_010051962.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-damage-repair/toleration protein DRT111, chloroplastic [Eucalyptus grandis])

HSP 1 Score: 160.999 bits (406), Expect = 6.097e-45
Identity = 77/166 (46.39%), Postives = 109/166 (65.66%), Query Frame = 0
Query:    1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAP 166
            M K+G++EG GLG+  QGIT  + A+      GVI            V+  + +P+ K K       PT++++L+NMVGPGEVDDDL+ E A ECAK+G V++ L+FE+ + ++P EE VR FV FER E   KA V +NGR+FGGR V A+F+DEE+F++ +LAP
Sbjct:  221 MAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVI------------VNASESKPEKKVKSVNFNGQPTRVLMLRNMVGPGEVDDDLEEEVASECAKYGTVTKVLIFEITEPNFPAEEAVRIFVQFERAEETTKALVDLNGRYFGGRVVHATFYDEERFSKNELAP 374          
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|1142843884|gb|AQL01970.1| (Splicing factor 45 [Zea mays])

HSP 1 Score: 160.999 bits (406), Expect = 6.103e-45
Identity = 82/167 (49.10%), Postives = 107/167 (64.07%), Query Frame = 0
Query:    1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFS-NPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAP 166
            M K+G++EG GLG+  QGIT  + A+      GVI            VD    +P  KK +   F   PT+++LL+NMVGPGEVDD+L+ E A ECA++G VS  L+FE+    +P +E VR F+ FER E A KA V + GRFFGGR VQA+FFDEE+FAR +LAP
Sbjct:  220 MAKMGWKEGQGLGKQEQGITAPLVAKKTDRRGGVI------------VDESSSRPSEKKSRSVNFDGQPTRVLLLRNMVGPGEVDDELEDEVASECARYGTVSRVLIFEITQAYFPSDEAVRIFIQFERAEEATKAMVDLQGRFFGGRVVQATFFDEERFARNELAP 374          
The following BLAST results are available for this feature:
BLAST of EWM22678.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103243|gb|EWM22678.1|2.731e-120100.00RNA binding protein [Nannochloropsis gaditana][more]
gi|695052912|ref|XP_009414530.1|3.680e-4647.34PREDICTED: DNA-damage-repair/toleration protein DR... [more]
gi|695052902|ref|XP_009414525.1|6.707e-4647.59PREDICTED: DNA-damage-repair/toleration protein DR... [more]
gi|297740820|emb|CBI31002.3|1.693e-4545.18unnamed protein product, partial [Vitis vinifera][more]
gi|976914540|gb|KVI00717.1|2.204e-4548.81hypothetical protein Ccrd_021030 [Cynara carduncul... [more]
gi|226500638|ref|NP_001149001.1|4.337e-4549.10splicing factor 45 [Zea mays] >gi|195623866|gb|ACG... [more]
gi|629110836|gb|KCW75796.1|4.884e-4546.39hypothetical protein EUGRSUZ_D00186 [Eucalyptus gr... [more]
gi|1026026178|ref|XP_016559360.1|5.048e-4548.80PREDICTED: DNA-damage-repair/toleration protein DR... [more]
gi|702316597|ref|XP_010051962.1|6.097e-4546.39PREDICTED: LOW QUALITY PROTEIN: DNA-damage-repair/... [more]
gi|1142843884|gb|AQL01970.1|6.103e-4549.10Splicing factor 45 [Zea mays][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8033rna8033Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications