EWM22678.1, cds8011 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|585103243|gb|EWM22678.1| (RNA binding protein [Nannochloropsis gaditana]) HSP 1 Score: 345.51 bits (885), Expect = 2.731e-120 Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 Query: 1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAPGKEEC 171 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAPGKEEC Sbjct: 1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAPGKEEC 171
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|695052912|ref|XP_009414530.1| (PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X2 [Musa acuminata subsp. malaccensis] >gi|1091782031|ref|XP_018686492.1| PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X2 [Musa acuminata subsp. malaccensis]) HSP 1 Score: 164.466 bits (415), Expect = 3.680e-46 Identity = 80/169 (47.34%), Postives = 109/169 (64.50%), Query Frame = 0 Query: 1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAPGKE 169 M K+G++EG GLG+ QGIT + A+ GVI V+ + +P K K L S+PT++VLL+NMVGPGEVDD+L+ E A EC K+G V+ L+FE+ + ++P +E VR FV FER E A KA + ++GRFFGGR V ASF+DEE+F +LAP E Sbjct: 227 MAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVI------------VNASESKPDKKPKSVNLNSSPTRVVLLRNMVGPGEVDDELEDEVASECTKYGTVTRVLIFEITEANFPTDEAVRIFVQFERSEEATKALIDLDGRFFGGRVVHASFYDEERFGNNELAPMPE 383
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|695052902|ref|XP_009414525.1| (PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Musa acuminata subsp. malaccensis] >gi|695052904|ref|XP_009414526.1| PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Musa acuminata subsp. malaccensis] >gi|695052906|ref|XP_009414527.1| PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Musa acuminata subsp. malaccensis] >gi|695052908|ref|XP_009414528.1| PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Musa acuminata subsp. malaccensis]) HSP 1 Score: 163.696 bits (413), Expect = 6.707e-46 Identity = 79/166 (47.59%), Postives = 108/166 (65.06%), Query Frame = 0 Query: 1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAP 166 M K+G++EG GLG+ QGIT + A+ GVI V+ + +P K K L S+PT++VLL+NMVGPGEVDD+L+ E A EC K+G V+ L+FE+ + ++P +E VR FV FER E A KA + ++GRFFGGR V ASF+DEE+F +LAP Sbjct: 227 MAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVI------------VNASESKPDKKPKSVNLNSSPTRVVLLRNMVGPGEVDDELEDEVASECTKYGTVTRVLIFEITEANFPTDEAVRIFVQFERSEEATKALIDLDGRFFGGRVVHASFYDEERFGNNELAP 380
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|297740820|emb|CBI31002.3| (unnamed protein product, partial [Vitis vinifera]) HSP 1 Score: 156.377 bits (394), Expect = 1.693e-45 Identity = 75/166 (45.18%), Postives = 108/166 (65.06%), Query Frame = 0 Query: 1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAP 166 M K+G++EG GLG+ QGIT + A+ GVI V+ + +P+ K K S PT+++LL+NMVGPGEVDD+L+ E ECAK+G V+ L+FE+ + ++P +E VR FV FER E KA V ++GRFFGGR V A+F+DE++F++ +LAP Sbjct: 8 MAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVI------------VNASESKPEKKVKSVNFNSPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVHATFYDEDRFSKNELAP 161
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|976914540|gb|KVI00717.1| (hypothetical protein Ccrd_021030 [Cynara cardunculus var. scolymus]) HSP 1 Score: 162.155 bits (409), Expect = 2.204e-45 Identity = 82/168 (48.81%), Postives = 112/168 (66.67%), Query Frame = 0 Query: 1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSN--PTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAP 166 M K+G++ G GLG+ QGIT + A+ GVI V+ + + QP+KK RG+ N PT++VLL+NMVGPGEVDDDL+ E AEECAK+G V+ L+FE+ + ++P +E VR FV FER E A KA V + GRFFGGR V+A+F++EE+F +LAP Sbjct: 215 MAKMGWKAGQGLGKQEQGITTPLMAKKTDRRAGVI------------VNASEPKQQPEKKPRGVNINGQPTRVVLLRNMVGPGEVDDDLETEVAEECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQATKALVDLEGRFFGGRVVRATFYEEERFNTNELAP 370
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|226500638|ref|NP_001149001.1| (splicing factor 45 [Zea mays] >gi|195623866|gb|ACG33763.1| splicing factor 45 [Zea mays]) HSP 1 Score: 161.384 bits (407), Expect = 4.337e-45 Identity = 82/167 (49.10%), Postives = 107/167 (64.07%), Query Frame = 0 Query: 1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFS-NPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAP 166 M K+G++EG GLG+ QGIT + A+ GVI VD +P KK + F PT+++LL+NMVGPGEVDD+L+ E A ECA++G VS L+FE+ +P +E VR F+ FER E A KA V + GRFFGGR VQA+FFDEE+FAR +LAP Sbjct: 220 MAKMGWKEGQGLGKQEQGITAPLVAKKTDRRGGVI------------VDESSSRPSEKKSRSVNFDGQPTRVLLLRNMVGPGEVDDELEDEVASECARYGTVSRVLIFEITQADFPSDEAVRIFIQFERAEEATKAMVDLQGRFFGGRVVQATFFDEERFARNELAP 374
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|629110836|gb|KCW75796.1| (hypothetical protein EUGRSUZ_D00186 [Eucalyptus grandis]) HSP 1 Score: 160.999 bits (406), Expect = 4.884e-45 Identity = 77/166 (46.39%), Postives = 109/166 (65.66%), Query Frame = 0 Query: 1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAP 166 M K+G++EG GLG+ QGIT + A+ GVI V+ + +P+ K K PT++++L+NMVGPGEVDDDL+ E A ECAK+G V++ L+FE+ + ++P EE VR FV FER E KA V +NGR+FGGR V A+F+DEE+F++ +LAP Sbjct: 211 MAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVI------------VNASESKPEKKVKSVNFNGQPTRVLMLRNMVGPGEVDDDLEEEVASECAKYGTVTKVLIFEITEPNFPAEEAVRIFVQFERAEETTKALVDLNGRYFGGRVVHATFYDEERFSKNELAP 364
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|1026026178|ref|XP_016559360.1| (PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Capsicum annuum]) HSP 1 Score: 160.999 bits (406), Expect = 5.048e-45 Identity = 81/166 (48.80%), Postives = 105/166 (63.25%), Query Frame = 0 Query: 1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAP 166 M K+G++EG GLG+ QGIT + A+ GVI + +QQ P+ K K PT++VLL+NMVGPGEVDDDL+GE AEEC K G V+ L+FE+ + ++P EE VR FV FER E A KA + + GRFFGGR V A F+DEE+F +LAP Sbjct: 210 MAKMGWKEGQGLGKLEQGITTPLMAKKTDKRGGVIVA----------SEAKQQPPEKKVKSVNFNMPPTRVVLLRNMVGPGEVDDDLEGEVAEECTKFGTVTRVLIFEITEANFPHEEAVRIFVQFERTEQATKALIELEGRFFGGRVVNACFYDEERFGNNELAP 365
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|702316597|ref|XP_010051962.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-damage-repair/toleration protein DRT111, chloroplastic [Eucalyptus grandis]) HSP 1 Score: 160.999 bits (406), Expect = 6.097e-45 Identity = 77/166 (46.39%), Postives = 109/166 (65.66%), Query Frame = 0 Query: 1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFSNPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAP 166 M K+G++EG GLG+ QGIT + A+ GVI V+ + +P+ K K PT++++L+NMVGPGEVDDDL+ E A ECAK+G V++ L+FE+ + ++P EE VR FV FER E KA V +NGR+FGGR V A+F+DEE+F++ +LAP Sbjct: 221 MAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVI------------VNASESKPEKKVKSVNFNGQPTRVLMLRNMVGPGEVDDDLEEEVASECAKYGTVTKVLIFEITEPNFPAEEAVRIFVQFERAEETTKALVDLNGRYFGGRVVHATFYDEERFSKNELAP 374
BLAST of EWM22678.1 vs. NCBI_GenBank
Match: gi|1142843884|gb|AQL01970.1| (Splicing factor 45 [Zea mays]) HSP 1 Score: 160.999 bits (406), Expect = 6.103e-45 Identity = 82/167 (49.10%), Postives = 107/167 (64.07%), Query Frame = 0 Query: 1 MKKLGYQEGAGLGRDRQGITEAIKARALGGGKGVISGPAQGGKGAQDVDRQQQQPQPKKKKRGLFS-NPTKIVLLKNMVGPGEVDDDLQGETAEECAKHGPVSECLVFEVNDNSYPEEERVRTFVAFERQESAVKAYVAMNGRFFGGRQVQASFFDEEKFARKDLAP 166 M K+G++EG GLG+ QGIT + A+ GVI VD +P KK + F PT+++LL+NMVGPGEVDD+L+ E A ECA++G VS L+FE+ +P +E VR F+ FER E A KA V + GRFFGGR VQA+FFDEE+FAR +LAP Sbjct: 220 MAKMGWKEGQGLGKQEQGITAPLVAKKTDRRGGVI------------VDESSSRPSEKKSRSVNFDGQPTRVLLLRNMVGPGEVDDELEDEVASECARYGTVSRVLIFEITQAYFPSDEAVRIFIQFERAEEATKAMVDLQGRFFGGRVVQATFFDEERFARNELAP 374 The following BLAST results are available for this feature:
BLAST of EWM22678.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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