rna8020, rna8020 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8020
Unique Name	rna8020
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1796
Alignment location	KK037247.1:363915..365782 -

Link to JBrowse

Properties


Property Name	Value
Product	receptor expression-enhancing protein 6
Orig transcript id	gnl\|cribi\|Naga_100023g7.3979.mrna
Orig protein id	gnl\|cribi\|Naga_100023g7.3979
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:363915..365782 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100023g7	gene7766	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8020	rna8020-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22663.1	cds7998	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:363915..365782-
coding sequence from alignment at KK037247.1:363915..365782-

mRNA sequence

>rna8020 ID=rna8020|Name=rna8020|organism=Nannochloropsis gaditana|type=mRNA|length=1796bp
TTGGAACCCTGCAAGATTCCCCCTTAACCAAGTCAAAACGGCTCCATAGA
ACTCTCCCATTCATCATTGATCTCATATTTCCCCCACAATTCAAAGGATA
CAGACTCTTTTGTCGCTCTAGCTAATTTACACTGACCGAGAGGTATTCTC
CACCGGCAGCGCCACTGATCCCTCGTGCAGCAACAGAAAGCAGTTCGAGA
AGTCGGTGTATCAATATGAAGGATTTGAGGGCCTCTATGTCAGTTGCGCT
GATGACCGCTCTCATTTCGACAAGCATATCATCGGAGGCCAGTGCTTTCC
TTTATCTTTCGTCTTCATGTCCACTGTCGTCACGTCCACAAACTTCATGT
CAAAGGAGCAAGACGAGGTTTGCAGACAAGAGCAGAAATTTTGGAAGAAG
TGTCTTGATGATGGTTGCTGCCGCCTCTTCTTCGAACAGGAAAAAGAATA
ATAGTAGCGGACTGCGCGGTAACGTTTTACGCAGTAGCAGCGGCGCACGT
AGACTCAACGACACAACAGCTCCCGCGTCAGGTGCTGCTTTTGATCCACA
CAATCCTTTCTTCACATCAGAGTTTGGCGAGCAAGAGCTTGAAGATAATT
CTTCAACGTCACCTGAGACCGAGGCTGAGCGAGAGAAGCGCCTACAAGAA
GAGGATGAGTGGCTTTTGAATTTCAGTCGGGATGACCCCGATTCCCACAC
AGAGACCTTTTCCGACCCCAAGGAGCGGCAATCCCGAGCTCGCGCCACGA
AGGACAGGTATGACTTCACCTGTTTGACCGTGGAGGAAGTGGCTCGGTCG
TACCAAGTGCCCATCTCCTGGGTCGGCGACGCCCTGTGCAACTTTGGGGT
TGTGCCACCGATTCAGTGGACGGCGCGCATAGGCGACGTGATCGATGGGG
ACCAGGCCTTCGCGCTGCTTGAGGCAATGCATGGATGGGATCATGCGATC
ATGTTTGATATGTACACGTGGGACAGCTTGCGGGAGCTAGCTGCTTCTCA
CGAGATTCCCATTGCCAAGGTCTTGCAAGTTTGCGACGAGGAGGGGTTTG
CCCTGCCATTTGGCTTGCGGAGTCACCTGCGGGTTGAGCAGTACGCTCGG
CTCATGCGGCGCCTGGGTATGGCACAAGAGCTCACAGACCACATTAGAGA
GGCGCACCCGGACCCTGACTATCCCTCTACGTGAGGGCAATGGGGGCAGG
CGTGCCTGATTGAGGGGTTTTGACTGTAGGAGCCAGCAGGCGGTCGAGAA
CGGAGACTGGGGCGGGAAATGTGATGAATGAATTACAAGACCCGTGGAGG
CGGACCTCGAGTAGCAGGACGTGCTTTGTTTGCTTCACACATCTAAGAAA
TCAGTCCAGGGGACGTAACGTTACGGTGTGAAACTTGAGGCCTCGATGTT
TCTTTTTTCTCACCAAACTGCGGGCACGGAGATAAATAGGACGTAATGGA
GAAAGCTACCGGCTCGCCTCCCTCTATCAGGGCCTCTCTTCAATCTTTCC
CCTACTTCACGGGTTTGAGCTCCAAATTCCTGACGTGTAATTTCTTCTTT
CGATTAATGTTTCCTTAGCGCGAACCATCCCCAAATTTAAAAGAACCAAA
TGAAAAATGCTAAAGGGCCACTTGGTGAATGTGCATCAAGGAAACAAGCA
GTCAAGCCCTCTATGGAGGTCTTTCTTGCATCCCGTCTCTCCCTAGTAAG
GGGTACAACTCCATGTGAACGTGATCGCAGTTATAGGTGTGCGACGGGTG
ATAAGAAGTCCGAGGAAACAAGCTTTTGCGTCTGTACATACTGACT

protein sequence of rna8020

>rna8020-protein ID=rna8020-protein|Name=rna8020|organism=Nannochloropsis gaditana|type=polypeptide|length=181bp
MADQIKLQLSKLRIWLDKYPAMKVLEEKTHVPKEYAVCGAGVLVFLFLLF
SNGAGFLCNVIGFLFPAYYSFKAIESPNKEDDKQWLVYWVVYSFFTIIEA
FVSVILYWIPFYYAFKLAFLVYLGYPGWNGATLIYNNFLKGVLQKYESTV
DAHLDAAKASAAAAVANASQSSGETDIKKKN

mRNA from alignment at KK037247.1:363915..365782-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8020 ID=rna8020|Name=rna8020|organism=Nannochloropsis gaditana|type=mRNA|length=1868bp|location=Sequence derived from alignment at KK037247.1:363915..365782- (Nannochloropsis gaditana)
GGCAATGGGTCGTCGTACGGCTTATTCACGACAGTCGAGAAGCTCATCGC
CACGTCTTCTGCTCCCCTCTCGCATTTTCCACCTCTTGTTCTGGAGGAGG
ACTGACTACGAAATGGTATACTAAGCAGGAAGCTTCCTCTTCGCTTGTGG
TACTTGCGAATAGACGTGTCCGACACACCTGAAGGAGCTTGTGACTTGGG
TACTTCATTGCTGTTTTCTCCCTTAAAAACTGTACTGTCACGGCTATAGT
CACCCTGAGCACGTGTCACGCACGCAACGAAAATGTTCCTGTTCCTTTCT
ACCTTTCAAAACACCCGCCGTCATGCGAAGCTCCTCCTGATGCACACAAT
AGCAACCACCTCTTCCCGCAAGTTTATTTGCTGGTGGACTACAAGGGCGT
TCGAAGCAAAAACTCACACCAGTATTCCCCTTTCCATTTAATACAGCAAC
ATCTTTGTCGGAAAAATGGCTGATCAGATTAAGCTCCAACTTTCCAAGCT
CCGCATCTGGCTGGATAAGTACCCTGCCATGAAGGTGCTGGAGGAAAAGA
CTCACGTGCCAAAGGAGTACGCTGTCTGTGGGGCTGGGGTTCTCGTCTTT
CTCTTCCTTCTTTTTAGTAATGGGGCCGGCTTCCTCTGGTAGGTTTAAAG
CATCCTGAAAATTGTTGCAAAGCTGCCTGTCCGCCATACAGACGAGAAGC
TAACTTCGCTTGCCCCCGTTGCATATAAAAACAGCAACGTGATTGGATTC
CTCTTCCCGGCTTACTACTCTTTTAAAGCAATTGAAAGTCCCAACAAAGA
GGACGACAAGCAGTGGTAAGGAAATTTGTGCTTTCAGTGCATTTTTCATG
AAAACGTGACTGTCCACTTCCAGGAGAAGGCCGACCTATGTATACTGTCT
TGAGCGTGCGAGTACTCGCATGAATCTCTTACACATATACCTTTTGTCAT
GAGATAGGCTGGTTTACTGGGTAGTGTACTCCTTTTTCACCATCATCGAG
GCATTTGTCTCCGTCATTCTCTACTGGTAAGTCCGAGGACACGGGCGGAA
AGGAGACTTTCGGGTTTCCTGACATTTATCTGGTGCAATCAGAGGCCTTC
ACATTTCAGTAATATTTTTTTGTATCGTGCTTATCCGCGTATCAGGATCC
CCTTCTACTACGCCTTCAAGCTCGCCTTCTTAGTCTATCTTGGCTACCCC
GGGTGGAATGGCGCTACTCTCATCTACAACAACTTCCTGAAGGGCGTTCT
TCAGAAGTATGAGTCTACTGTCGATGCCCATTTGGATGCCGCCAAGGCTT
CGGCTGCGGCGGCCGTCGCCAATGCCAGCCAGAGCAGTGGGGAAACCGAC
ATTAAGAAGAAGAACTGAGCGGTGATTATCGGGAAGGCCGCGAACTTGTA
CGAAGGATACCAATGCCAGGCACAGCTGAGTAAACAGAGCAGAGAATTTT
GAGTCAGTATGTACAGACGCAAAAGCTTGTTTCCTCGGACTTCTTATCAC
CCGTCGCACACCTATAACTGCGATCACGTTCACATGGAGTTGTACCCCTT
ACTAGGGAGAGACGGGATGCAAGAAAGACCTCCATAGAGGGCTTGACTGC
TTGTTTCCTTGATGCACATTCACCAAGTGGCCCTTTAGCATTTTTCATTT
GGTTCTTTTAAATTTGGGGATGGTTCGCGCTAAGGAAACATTAATCGAAA
GAAGAAATTACACGTCAGGAATTTGGAGCTCAAACCCGTGAAGTAGGGGA
AAGATTGAAGAGAGGCCCTGATAGAGGGAGGCGAGCCGGTAGCTTTCTCC
ATTACGTCCTATTTATCTCCGTGCCCGCAGTTTGGTGAGAAAAAAGAAAC
ATCGAGGCCTCAAGTTTC

Coding sequence (CDS) from alignment at KK037247.1:363915..365782-

>rna8020 ID=rna8020|Name=rna8020|organism=Nannochloropsis gaditana|type=CDS|length=2184bp|location=Sequence derived from alignment at KK037247.1:363915..365782- (Nannochloropsis gaditana)
GATCCCCTTCTACTACGCCTTCAAGCTCGCCTTCTTAGTCTATCTTGGCT
ACCCCGGGTGGAATGGCGCTACTCTCATCTACAACAACTTCCTGAAGGGC
GTTCTTCAGAAGTATGAGTCTACTGTCGATGCCCATTTGGATGCCGCCAA
GGCTTCGGCTGCGGCGGCCGTCGCCAATGCCAGCCAGAGCAGTGGGGAAA
CCGACATTAAGAAGAAGAACTGAGCTGGTTTACTGGGTAGTGTACTCCTT
TTTCACCATCATCGAGGCATTTGTCTCCGTCATTCTCTACTGCAACGTGA
TTGGATTCCTCTTCCCGGCTTACTACTCTTTTAAAGCAATTGAAAGTCCC
AACAAAGAGGACGACAAGCAGTGATGGCTGATCAGATTAAGCTCCAACTT
TCCAAGCTCCGCATCTGGCTGGATAAGTACCCTGCCATGAAGGTGCTGGA
GGAAAAGACTCACGTGCCAAAGGAGTACGCTGTCTGTGGGGCTGGGGTTC
TCGTCTTTCTCTTCCTTCTTTTTAGTAATGGGGCCGGCTTCCTCTGGATC
CCCTTCTACTACGCCTTCAAGCTCGCCTTCTTAGTCTATCTTGGCTACCC
CGGGTGGAATGGCGCTACTCTCATCTACAACAACTTCCTGAAGGGCGTTC
TTCAGAAGTATGAGTCTACTGTCGATGCCCATTTGGATGCCGCCAAGGCT
TCGGCTGCGGCGGCCGTCGCCAATGCCAGCCAGAGCAGTGGGGAAACCGA
CATTAAGAAGAAGAACTGAGCTGGTTTACTGGGTAGTGTACTCCTTTTTC
ACCATCATCGAGGCATTTGTCTCCGTCATTCTCTACTGCAACGTGATTGG
ATTCCTCTTCCCGGCTTACTACTCTTTTAAAGCAATTGAAAGTCCCAACA
AAGAGGACGACAAGCAGTGATGGCTGATCAGATTAAGCTCCAACTTTCCA
AGCTCCGCATCTGGCTGGATAAGTACCCTGCCATGAAGGTGCTGGAGGAA
AAGACTCACGTGCCAAAGGAGTACGCTGTCTGTGGGGCTGGGGTTCTCGT
CTTTCTCTTCCTTCTTTTTAGTAATGGGGCCGGCTTCCTCTGGATCCCCT
TCTACTACGCCTTCAAGCTCGCCTTCTTAGTCTATCTTGGCTACCCCGGG
TGGAATGGCGCTACTCTCATCTACAACAACTTCCTGAAGGGCGTTCTTCA
GAAGTATGAGTCTACTGTCGATGCCCATTTGGATGCCGCCAAGGCTTCGG
CTGCGGCGGCCGTCGCCAATGCCAGCCAGAGCAGTGGGGAAACCGACATT
AAGAAGAAGAACTGAGCTGGTTTACTGGGTAGTGTACTCCTTTTTCACCA
TCATCGAGGCATTTGTCTCCGTCATTCTCTACTGCAACGTGATTGGATTC
CTCTTCCCGGCTTACTACTCTTTTAAAGCAATTGAAAGTCCCAACAAAGA
GGACGACAAGCAGTGATGGCTGATCAGATTAAGCTCCAACTTTCCAAGCT
CCGCATCTGGCTGGATAAGTACCCTGCCATGAAGGTGCTGGAGGAAAAGA
CTCACGTGCCAAAGGAGTACGCTGTCTGTGGGGCTGGGGTTCTCGTCTTT
CTCTTCCTTCTTTTTAGTAATGGGGCCGGCTTCCTCTGGATCCCCTTCTA
CTACGCCTTCAAGCTCGCCTTCTTAGTCTATCTTGGCTACCCCGGGTGGA
ATGGCGCTACTCTCATCTACAACAACTTCCTGAAGGGCGTTCTTCAGAAG
TATGAGTCTACTGTCGATGCCCATTTGGATGCCGCCAAGGCTTCGGCTGC
GGCGGCCGTCGCCAATGCCAGCCAGAGCAGTGGGGAAACCGACATTAAGA
AGAAGAACTGAGCTGGTTTACTGGGTAGTGTACTCCTTTTTCACCATCAT
CGAGGCATTTGTCTCCGTCATTCTCTACTGCAACGTGATTGGATTCCTCT
TCCCGGCTTACTACTCTTTTAAAGCAATTGAAAGTCCCAACAAAGAGGAC
GACAAGCAGTGATGGCTGATCAGATTAAGCTCCAACTTTCCAAGCTCCGC
ATCTGGCTGGATAAGTACCCTGCCATGAAGGTGCTGGAGGAAAAGACTCA
CGTGCCAAAGGAGTACGCTGTCTGTGGGGCTGGGGTTCTCGTCTTTCTCT
TCCTTCTTTTTAGTAATGGGGCCGGCTTCCTCTG

Synonyms

Publications