rna8019, rna8019 (mRNA) Nannochloropsis gaditana

Overview
Namerna8019
Unique Namerna8019
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2621
Alignment locationKK037247.1:362536..364331 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100023g6.3975.mrna
Orig protein idgnl|cribi|Naga_100023g6.3975
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:362536..364331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100023g6gene7765Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8019rna8019-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22659.1cds7997Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8019 ID=rna8019|Name=rna8019|organism=Nannochloropsis gaditana|type=mRNA|length=2621bp
GGCGTGAGGTCACGGCTTGCATCTCCGAGGCAGGCACGGGTGTCAAGATA
AACCTTCCATATTCTTTCGAAAAGAAATTCTCTAGACTTTAAGGTGCATT
ATGCGTCTAAGAGTATGCATATAATCTATGTCAATGTTTGTTTCGCTTAA
GTCTTTCGTCGACATTCTCGAGATTTCGTGGAGCCCTCGAGCAGAACATT
CATAGAACATACTCTACACGCTGTCACTTTTACGGGACTTGTAATAGCTC
ACATACTCCACCCCACAATAGAAAAATGCACCCCTCTTCTCACCTTTGTA
TTTATATTCATGGTACTTCACCACCTTCCTCCTCGCTATCTCACTATAGA
GTTTCTCCGATTCACTAGTACTATCCAATCATCCCAGTGCTGATGCAGTT
ACAAGCTTACTTGTAGCGTATAGTATACATATGTCAATTAATTCGTTTCT
AAGAATGAATACAATTCTCAATTGTTTCAGCCCGCAGTAGCCTCGGTACT
TTGTACTCTTGTTCCTGCATATTTTGCTCGCCTGAGGTGAGAGCAAAAGG
TGGAGAAAAACGGGCGGAAGAAGGCAGTGGCGCAAGTGAAGGGGTGAGAT
TTGGAAAAGCAGGCGAAAATGCGGCAGACTCATGACTGAGAGCCGGGGAG
AAGAGCTCTGACGTGGTGGCGGGAGAAGGGGGCCAAAGGCCGCTGCTTGT
TTGTTCTTTGCGGCGCGAGAAGGTGTTGTCAGAGGGCGACGAGGGAGGAT
AAGGAAATGAAGGGGGATGTGAACTTGAGAAGCCACTAGGAGAGGATGAA
AAGTGTAGAGACGTGGCTGTTGTGCTATTGTGGCCGTCGCAATCATCGTG
GCGGGAAAAAGAAGGCAAAAAAGGTATACTGAATGCCGGAAGCGGGGCTA
CCGACGCATTAGCACGGGAGTATCCCCTGAAGTGATCAATATACGATGGA
GCACTTTCACTGGGAAATAGAACATGAGCAGTCTTTGTGGCTGTGTTATC
ATCCGATTGAAGGTGAAGGGCTTTTTTGTTGCCTGTCGCATTATTGGCAA
AGCCGGTACAAGGTGCGCAACAAGGTTCGCCTGCTTGTACGAGGCCATGA
CGGGTACAGCGATTAAAAAATGAGGATCAAAAGCTGGAAATTAAGGAATG
TGAGTGAGACACGGAGGCAGAGCGAACCGAGACTTACCGGCTACATTGAG
TGCCTGCGCCAATGGCTTGAGATTTCGTGCCCAAGATGATTCTGTAGGTG
GACATTGCTTGAATTCGTGCTGCTGTCGGAGCAAAGAGATGGTCTCAAAG
ATAACCAAACGTCGAATCGAAGCTCCACAACTCTTATCCTCCTTGCATTC
TTGCTCGGCATGGTCCCCATATAGGGACGCACAAGACTCGTTGCCAAGTG
AGGGCAGGTTCGTCATAACACACCGGTAGCTCTCCCAGATATATTTTACC
GTCTTTTCAAAATATGTAGGCCCACCGTCCCGGCCTATGACCTCGTATTG
AGTGGCTGAGGCTCCGTACAAGGGTGCTGTAGAGGAGTAAGGAGAAGGAG
TGTTCAGAGACGACGAGCATGCAGATGAGGGCATGGAGGGAAGAGTGGGC
CCAGAAGCTGAAGAAATGTTAGAGGAAGGGAGGTCAGGCCACCAAAGCGG
AGTATTTTTGCTGGAAAGATGCGCGTTGTTGGACCCAGGCGTTGCAAAAA
GATATGCCTCCTGCTCCCCACGTACGCGCGGATCGTGAATGAAAACACAG
CGATCGCGGTAGGGGCACGCGCCTGTCATTACCCACGTCAGGCACGGGAA
AACGCGGAACTTTCCTTTCTTTGGAATGCGCCCAGACTCTTCCATCTCCT
CGAGAGTCAGCCGTCGAAGTTCCGATTGGGAGTGAGCGAAGGCACAGGAG
GCGCCGTAAGGACAGCGTGGGTAATTGCGACACATTTCTGTCTGGGGTTA
TAAAAATGAAGTGCACGTGCAGATTGCGCGTGAGAAGTAAATGTAGCTTT
GGCTTGCTGAGTAATTGAAAGCAAGCGTCCTGACATAACTGACCTTGCGA
TGGCTCTCAATAATTGACGTTGGCGAGGGAGACACGTTGGACGCTGAGCG
GCCGGCCTTACTCTTCGTAGCACTGCCCATTGCACCATTATTGGAAATTG
ATGCACTCATTTCTCGAGAATTGCTGTGACTATTCGAGGACAAGGTCGAC
GACAGCGAGGCCCAAGGAGACGGGGTGTGCAGCAGTTGCGGCGGCTTGCT
TTTATAGACGTTCCAATACAAAGGTGAGGATTCCGAAGAAGCCTCGACCC
GTTTGCGACTTTGAACAGAGCACGTTTTGGTCCTTCGTGCTAGAGAGCGT
TTGTCTGATCCCAGCTCTTGCTGTTGCGGTTGGTGGGGTCCGTAAGGGCT
GCCCTTCGTGTCCATGCTCTTCGCCCTACCATTTTTGGATTTCCATGAGT
TAATAGCACTTATCTTTTTTTCCAGAAACATAATCTGTTTCATATATAAA
TCTATAATGAATATTTTGACATGCGTGTCTACTGTTTCATTGGTTAAAGT
ACTCCGGGGGAAGGGAAGAGAAGGAGGTTCGGGAACGTAATTCCTCCTCA
ACTTCTGAGATTGTGTCCTCA
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protein sequence of rna8019

>rna8019-protein ID=rna8019-protein|Name=rna8019|organism=Nannochloropsis gaditana|type=polypeptide|length=322bp
MKDLRASMSVALMTALISTSISSEASAFLYLSSSCPLSSRPQTSCQRSKT
RFADKSRNFGRSVLMMVAAASSSNRKKNNSSGLRGNVLRSSSGARRLNDT
TAPASGAAFDPHNPFFTSEFGEQELEDNSSTSPETEAEREKRLQEEDEWL
LNFSRDDPDSHTETFSDPKERQSRARATKDRYDFTCLTVEEVARSYQVPI
SWVGDALCNFGVVPPIQWTARIGDVIDGDQAFALLEAMHGWDHAIMFDMY
TWDSLRELAASHEIPIAKVLQVCDEEGFALPFGLRSHLRVEQYARLMRRL
GMAQELTDHIREAHPDPDYPST
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mRNA from alignment at KK037247.1:362536..364331+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8019 ID=rna8019|Name=rna8019|organism=Nannochloropsis gaditana|type=mRNA|length=1796bp|location=Sequence derived from alignment at KK037247.1:362536..364331+ (Nannochloropsis gaditana)
TTGGAACCCTGCAAGATTCCCCCTTAACCAAGTCAAAACGGCTCCATAGA
ACTCTCCCATTCATCATTGATCTCATATTTCCCCCACAATTCAAAGGATA
CAGACTCTTTTGTCGCTCTAGCTAATTTACACTGACCGAGAGGTATTCTC
CACCGGCAGCGCCACTGATCCCTCGTGCAGCAACAGAAAGCAGTTCGAGA
AGTCGGTGTATCAATATGAAGGATTTGAGGGCCTCTATGTCAGTTGCGCT
GATGACCGCTCTCATTTCGACAAGCATATCATCGGAGGCCAGTGCTTTCC
TTTATCTTTCGTCTTCATGTCCACTGTCGTCACGTCCACAAACTTCATGT
CAAAGGAGCAAGACGAGGTTTGCAGACAAGAGCAGAAATTTTGGAAGAAG
TGTCTTGATGATGGTTGctgccgcctcttcttcgaACAGGAAAAAGAATA
ATAGTAGCGGACTGCGCGGTAACGTTTTACGCAGTAGCAGCGGCGCACGT
AGACTCAACGACACAACAGCTCCCGCGTCAGGTGCTGCTTTTGATCCACA
CAATCCTTTCTTCACATCAGAGTTTGGCGAGCAAGAGCTTGAAGATAATT
CTTCAACGTCACCTGAGACCGAGGCTGAGCGAGAGAAGCGCCtacaagaa
gaggatgagtgGCTTTTGAATTTCAGTCGGGATGACCCCGATTCCCACAC
AGAGACCTTTTCCGACCCCAAGGAGCGGCAATCCCGAGCTCGCGCCACGA
AGGACAGGTATGACTTCACCTGTTTGaccgtggaggaagtggctCGGTCG
TACCAAGTGCCCATCTCCTGGGTCGGCGACGCCCTGTGCAACTTTGGGGT
TGTGCCACCGATTCAGTGGACGGCGCGCATAGGCGACGTGATCGATGGGG
ACCAGGCCTTCGCGCTGCTTGAGGCAATGCATGGATGGGATCATGCGATC
ATGTTTGATATGTACACGTGGGACAGCTTGCGGGAGCTAGCTGCTTCTCA
CGAGATTCCCATTGCCAAGGTCTTGCAAGTttgcgacgaggaggggttTG
CCCTGCCATTTGGCTTGCGGAGTCACCTGCGGGTTGAGCAGTACGCTCGG
CTCATGCGGCGCCTGGGTATGGCACAAGAGCTCACAGACCACATTAGAGA
GGCGCACCCGGACCCTGACTATCCCTCTACGTGAGGGCAATGGGGGCAGG
CGTGCCTGATTGAGGGGTTTTGACTGTAGGAGCCAGCAGGCGGTCGAGAA
CGGAGACTGGGGCGGGAAATGTGATGAATGAATTACAAGACCCGTGGAGG
CGGACCTCGAGTAGCAGGACGTGCTTTGTTTGCTTCACACATCTAAGAAA
TCAGTCCAGGGGACGTAACGTTACGGTGTGAAACTTGAGGCCTCGATGTT
TCTTTTTTCTCACCAAACTGCGGGCACGGAGATAAATAGGACGTAATGGA
GAAAGCTACCGGCTCGCCTCCCTCTATCAGGGCCTCTCTTCAATCTTTCC
CCTACTTCACGGGTTTGAGCTCCAAATTCCTGACGTGTAATTTCTTCTTT
CGATTAATGTTTCCTTAGCGCGAACCATCCCCAAATTTAAAAGAACCAAA
TGAAAAATGCTAAAGGGCCACTTGGTGAATGTGCATCAAGGAAACAAGCA
GTCAAGCCCTCTATGGAGGTCTTTCTTGCATCCCGTCTCTCCCTAGTAAG
GGGTACAACTCCATGTGAACGTGATCGCAGTTATAGGTGTGCGACGGGTG
ATAAGAAGTCCGAGGAAACAAGCTTTTGCGTCTGTACATACTGACT
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Coding sequence (CDS) from alignment at KK037247.1:362536..364331+

>rna8019 ID=rna8019|Name=rna8019|organism=Nannochloropsis gaditana|type=CDS|length=969bp|location=Sequence derived from alignment at KK037247.1:362536..364331+ (Nannochloropsis gaditana)
ATGAAGGATTTGAGGGCCTCTATGTCAGTTGCGCTGATGACCGCTCTCAT
TTCGACAAGCATATCATCGGAGGCCAGTGCTTTCCTTTATCTTTCGTCTT
CATGTCCACTGTCGTCACGTCCACAAACTTCATGTCAAAGGAGCAAGACG
AGGTTTGCAGACAAGAGCAGAAATTTTGGAAGAAGTGTCTTGATGATGGT
TGctgccgcctcttcttcgaACAGGAAAAAGAATAATAGTAGCGGACTGC
GCGGTAACGTTTTACGCAGTAGCAGCGGCGCACGTAGACTCAACGACACA
ACAGCTCCCGCGTCAGGTGCTGCTTTTGATCCACACAATCCTTTCTTCAC
ATCAGAGTTTGGCGAGCAAGAGCTTGAAGATAATTCTTCAACGTCACCTG
AGACCGAGGCTGAGCGAGAGAAGCGCCtacaagaagaggatgagtgGCTT
TTGAATTTCAGTCGGGATGACCCCGATTCCCACACAGAGACCTTTTCCGA
CCCCAAGGAGCGGCAATCCCGAGCTCGCGCCACGAAGGACAGGTATGACT
TCACCTGTTTGaccgtggaggaagtggctCGGTCGTACCAAGTGCCCATC
TCCTGGGTCGGCGACGCCCTGTGCAACTTTGGGGTTGTGCCACCGATTCA
GTGGACGGCGCGCATAGGCGACGTGATCGATGGGGACCAGGCCTTCGCGC
TGCTTGAGGCAATGCATGGATGGGATCATGCGATCATGTTTGATATGTAC
ACGTGGGACAGCTTGCGGGAGCTAGCTGCTTCTCACGAGATTCCCATTGC
CAAGGTCTTGCAAGTttgcgacgaggaggggttTGCCCTGCCATTTGGCT
TGCGGAGTCACCTGCGGGTTGAGCAGTACGCTCGGCTCATGCGGCGCCTG
GGTATGGCACAAGAGCTCACAGACCACATTAGAGAGGCGCACCCGGACCC
TGACTATCCCTCTACGTGA
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Synonyms
Publications