rna8015, rna8015 (mRNA) Nannochloropsis gaditana

Overview
Namerna8015
Unique Namerna8015
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2195
Alignment locationKK037247.1:355395..356355 +

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Properties
Property NameValue
Productbinding domain protein
Orig transcript idgnl|cribi|Naga_100218g12.5293.mrna
Orig protein idgnl|cribi|Naga_100218g12.5293
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:355395..356355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100218g12gene7761Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8015rna8015-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22681.1cds7993Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8015 ID=rna8015|Name=rna8015|organism=Nannochloropsis gaditana|type=mRNA|length=2195bp
AAGTCACCTATGATCATCGAAGCCAAGCTCCACCAAAACGCAAGGCCCCC
CGCTGATCAGCGTCGGAAGCAAACCAAACCTCGCTGCCGCCGCCATGACT
TCCGGACTTTCACACCCTGGCTGAAGCCAGATATGTTTGATTCCAAGTCT
TGCTGCCTCTTCGAGTATGTCGACGGTGACTATTGGGGGTGTAACAACAG
ATACAGCCGTATTGGTAGGGTTCGGTAGGGAGGATAAGTTGGCGAGAGCG
GCAATGCCTTCAATCATCCTCTCTTTTGGATTGATGGGTGTAATGCTTTT
GCCATGCTGGATATAGCAACGTAGGACTTTATTCCCGAACTTCTCTCGGT
TTGTACTAGCCCCTACTACGGCAAAGCTGGAAGCTGACAGAAAAGCCGGA
ATTTTCGCGGCAGACATTTTACCGACGATTGTCGAGCGTACACTGCAGCA
GTGGGCGTTGTCAAAAGAGGATTCTATGATGCGGTGAAGTGGAATAGCCC
CCTCCTTTGCGGTGCGAGAGCTTAGCGAATGGCCTTCAAAGACAGATAAG
CTAGCAAATGGAACAACTGTGGTGGCGGGAGATGTAAAACCTCAAGATGT
GTAAATAGAAGGTAGACATAACATTTCCAATTGTCCGTTGAGCCCTTGAA
CCAGATGAAATAGCACCTGCAGGATACGTGGACTTCTTTCGATAGATCCG
ACTGAACTAGTGAATGTGCCTCCTATCGGGATTTGTCTCTGACAAACTCA
AGAGGATAAAGTTGAGACGCACACAGGTACATTTTGAAAACATATAACAG
AAAAGGATTGGATTACGGTCCCATGTACTGTCAAGGCGCATTATCAATCA
GTATCACCATGATGTACCAATTTGAACATTTCTTAGCTGTCCACGTGTAT
TACGGGGGCACCAGTTCAAATGCTTTGGCAGACGCTTCATGTATTTATTG
CTGTCAGGAGCACGTATTTTCAAGGCATCTTACTTTTCGTCCAAATCAGG
TGCATGAAATTGTACGCCGGTGTAGTTATCCGCGTTGTTGTGCGTGTGAA
CCTTAAAGTCGCACCGGCGTTAGAAAAACATCGCTGAAAAGGGCCTAGCA
GAGGTTCAACTGTCTCACAGCCGGTACACTATCCATTCCAGATAGACTCT
TGGTATCGCACGAGAGCCACGATGGTGAGGCCAGGTGTTGCGCACGAAAG
CAAACAAAGCCAAAAGCGTCCTTTCTTCCATTCTGGTGTCGTAAGTCCTC
TCTCGGCTCGTGCTGCTACCGCTTTTGGTAGCCCTGACGAAACATCCGCC
ACCGCCCCGGCTAGTGCCAGCCACCCGCAACACGGGGCCCAGGAGGAGGA
AGAGCAATTGCCGCAACAGAAACACAGGCATAAGTCTCATGTGGATGAGA
GGAAAAAGTCGAAAAAAGAAGATTTAGCTGTGGGCATAAACGCTTGGATC
ACAATGCCATCCACCGAGCGTGATATTTTTGTGGACAGGTGTCGAAAAGA
GATTGCACCTCTTTTGGGAGCCATTCCCCCAGCAGGGACATTAAGGGGTG
AGGAAGAAGCACACACAGACGACATAGGTCGGCGAGGAAGATGTGCACCG
ATGCATGGAATCACCGGAGGAGATAGAACACGCAAGAAAGCGAAACTTCG
CGTCCAAAAAGTCTTTTCATACCGAGATGGGACTGCGCAACACAAGTTTG
CGCGACAGTGTATTTGCATTGGTATCAATGAGGTCACTAGGGCTTTGGAG
AGGGATGAACTCTCCCTCATACTTATTTGCAGGGATGTCCGACCAGCACG
TCTCGTGGAGCATGTGGCTGTTTTAGCAGCGGTTCGCGATGTCCCCTTCT
TCCTTCTGCCTAAGGCCACATCGGCCCTAGGTCAGGCACTAGGCTTAAAG
TGTATAGCAGCTTTAGGTTTTCGGGGGGGGGAACTTATGAGACGCCTTAA
AAAAGGAGAAAATGATACAGACGGGAGCGATAATGACGCAGAACGTGTGG
TAATGGATGATGTGCGAAGTAGATTGCAGTCATTTCTGGATTTTTTGCTG
ACCAAGCAGGATTACATGAATGCTGTTCGGATTGATTAAGTAAAATAAAG
TTAAAAGTAAACGCACACGCAGTAGTTTTGAGTGCACCGCAGCAAGTCAC
AGATGAATGTAGCTTTCCAAAAAAATCACATTGCAAGTGCTCGAC
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protein sequence of rna8015

>rna8015-protein ID=rna8015-protein|Name=rna8015|organism=Nannochloropsis gaditana|type=polypeptide|length=137bp
MSAAKIPAFLSASSFAVVGASTNREKFGNKVLRCYIQHGKSITPINPKER
MIEGIAALANLSSLPNPTNTAVSVVTPPIVTVDILEEAARLGIKHIWLQP
GCESPEVMAAAARFGLLPTLISGGPCVLVELGFDDHR
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mRNA from alignment at KK037247.1:355395..356355+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8015 ID=rna8015|Name=rna8015|organism=Nannochloropsis gaditana|type=mRNA|length=961bp|location=Sequence derived from alignment at KK037247.1:355395..356355+ (Nannochloropsis gaditana)
TGCTCCTGACAGCAATAAATACATGAAGCGTCTGCCAAAGCATTTGAACT
GGTGCCCCCGTAATACACGTGGACAGCTAAGAAATGTTCAAATTGGTACA
TCATGGTGATACTGATTGATAATGCGCCTTGACAGTACATGGGACCGTAA
TCCAATCCTTTTCTGTTATATGTTTTCAAAATGTACCTGTGTGCGTCTCA
ACTTTATCCTCTTGAGTTTGTCAGAGACAAATCCCGATAGGAGGCACATT
CACTAGTTCAGTCGGATCTATCGAAAGAAGTCCACGTATCCTGCAGGTGC
TATTTCATCTGGTTCAAGGGCTCAACGGACAATTGGAAATGTTATGTCTA
CCTTCTATTTACACATCTTGAGGTTTTACATCTCCCGCCACCACAGTTGT
TCCATTTGCTAGCTTATCTGTCTTTGAAGGCCATTCGCTAAGCTCTCGCA
ccgcaaaggagggggctaTTCCACTTCACCGCATCATAGAATCCTCTTTT
GACAACGCCCACTGCTGCAGTGTACGCTCGACAATCGTCGGTAAAATGTC
TGCCGCGAAAATTCCGGCTTTTCTGTCAGCTTCCAGCTTTGCCGTAGTAG
GGGCTAGTACAAACCGAGAGAAGTTCGGGAATAAAGTCCTACGTTGCTAT
ATCCAGCATGGCAAAAGCATTACACCCATCAATCCAAAAGAGAGGATGAT
TGAAGGCATTGCCGCTCTCGCCAACTTATCCTCCCTACCGAACCCTACCA
ATACGGCTGTATCTGTTGTTACACCCCCAATAGTCACCGTCGACATACTC
GAAGAGGCAGCAAGACTTGGAATCAAACATATCTGGCTTCAGCCAGGGTG
TGAAAGTCCGGAAGtcatggcggcggcagcgagGTTTGGTTTGCTTCCGA
CGCTGATCAGCGGGGGGCCTTGCGTTTTGGTGGAGCTTGGCTTCGATGAT
CATAGGTGACT
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Coding sequence (CDS) from alignment at KK037247.1:355395..356355+

>rna8015 ID=rna8015|Name=rna8015|organism=Nannochloropsis gaditana|type=CDS|length=414bp|location=Sequence derived from alignment at KK037247.1:355395..356355+ (Nannochloropsis gaditana)
ATGTCTGCCGCGAAAATTCCGGCTTTTCTGTCAGCTTCCAGCTTTGCCGT
AGTAGGGGCTAGTACAAACCGAGAGAAGTTCGGGAATAAAGTCCTACGTT
GCTATATCCAGCATGGCAAAAGCATTACACCCATCAATCCAAAAGAGAGG
ATGATTGAAGGCATTGCCGCTCTCGCCAACTTATCCTCCCTACCGAACCC
TACCAATACGGCTGTATCTGTTGTTACACCCCCAATAGTCACCGTCGACA
TACTCGAAGAGGCAGCAAGACTTGGAATCAAACATATCTGGCTTCAGCCA
GGGTGTGAAAGTCCGGAAGtcatggcggcggcagcgagGTTTGGTTTGCT
TCCGACGCTGATCAGCGGGGGGCCTTGCGTTTTGGTGGAGCTTGGCTTCG
ATGATCATAGGTGA
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Synonyms
Publications