rna8011, rna8011 (mRNA) Nannochloropsis gaditana

Overview
Namerna8011
Unique Namerna8011
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1305
Alignment locationKK037247.1:347156..348189 -

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Properties
Property NameValue
Productshort-chain dehydrogenase reductase sdr
Orig transcript idgnl|cribi|Naga_100218g8.5300.mrna
Orig protein idgnl|cribi|Naga_100218g8.5300
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:347156..348189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100218g8gene7757Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8011rna8011-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22688.1cds7989Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8011 ID=rna8011|Name=rna8011|organism=Nannochloropsis gaditana|type=mRNA|length=1305bp
GCGGTCCCCCGCAAATAAGGCGCTTTGTATCCCCGCACCTCTCAACTCCC
CTCGATATATGTATATGCATAGCCAGGTAGTTTCACTGTGCAGTCATGGC
GGATGACGACCTGTTTGGTTTTTTCAATGAGCTCAAAGAGGTCAAGGCGC
CTGAAGAGGAGGCGGGGCCCAATGCAGGAGAAGGCGAGGCGCCAGAACAT
CAGGACGGGCGCCACCTGGGCTCAACTACATTAAATGCTTCTGGAAAAAG
AGGCCGTGACGAAGAACCCGAAAATGTAAGTCATGACATTGGCCCCACCA
TGCCTCCCTCGCACCATCCGGCTTTCAAGAAGGCCAAGGCCGCTGCAGCC
AAGCCCCTGCTCTACGGCACGGCCGGCGACGGTGACGGGTCGCACACTCC
CACGGCCTCCGCCCCGTTGGCATCTCCCTATTCGTCATCTGGAACGCAGG
AAAAGCCATCGGCCTTCGCTCCGGCGATATCCGTCTCTGCCGCTCCGACC
CGGGCTAGGCCGGAGTCCAGTGTGCCCGCTCCGTCAAGCTCTGTTACTGC
TTCGCAAGACTTCTCGGGCCCCTATTCTGGGACTACAGCGCCGCCTCAGG
CTGTGGCCGGCGCTGGCGTGGGTACTCTCTTCACTGTGGGAGCAGGTGCC
AAGCCCGCAGCGGGGACATGGGGGGCGGGTCAACAGCCAAGACCAGGGGG
AGGGCCGAGGCCAGGAGGGGGCACGCAGGGTCAAACGGAGGCTGGCAAGC
CCAAGAAGTTCATCCGCGTCGGGCCCGGCCAGACGTGGGAGGATCCGACG
CTGAACGAGTGGCCTGAAAACGACTTCCGCATTTTCTGCGGGGATCTGGG
CCCGGAAGTGACCGACGAGCATCTGACGAACGCCTTCCGAGGCAAGTACC
CCTCCTTCGCCAAGGCCAAGGTGCTCCGCGACAGGGGCACAGGCAAGTCG
CGAGGCTACGGCTTCGTCTCCTTTCTGGACCCGCTGGAGGGGCTCAAGGC
CCTGCGAGAGATGAACGGGAAGTATGTGGGGAGTCGACCCGTGAAGCTGC
GCAAGTGCGATTGGAAAGAGAGGGACTTGAAGGAGGTCCGCAAGAAGGAG
AAGAGCAAGAAGAAATTTTTGAGCAAGCTGGGTTTGGGGTGAGCGAGGAA
GACGCATGCTGTAAAGCGAAGAGAGGAAGCCTCATCCAAGACAATGCGAC
CAAAGAACGACACGCTCGTCGGCCGAAATGGTCCTGGACCCTTATTATTC
CTTTCCGTTCGATCGAACGCCCCTTTTCAGTGCGTGCTTACTGCGCCTGA
GGACC
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protein sequence of rna8011

>rna8011-protein ID=rna8011-protein|Name=rna8011|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MRLRDWAWPVGIIATLWGASHLVLRRAYPAPPPGNQAIIVISGASTGIGR
HAAEYLARLGFTVLAGVRREADMEDLRSAHLPSLHPIILDVTNASDVRAA
VERAEALAPLPVWGLVNNAGLGYPIPVELADMEKARKLFEVNVLAVIGMA
QAFVPLLRRAPGGRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLE
LAAWEMSVSLVVPGQVQSGMWGKLTGQNAPAINDLSADQYALYKPLFLQV
EKAVSGFIPKLSPASVTSQAIAHALMSPQPKTRYLVASVNGVPLWLLRGL
CGLLPDRVVDFVKLRL
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mRNA from alignment at KK037247.1:347156..348189-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8011 ID=rna8011|Name=rna8011|organism=Nannochloropsis gaditana|type=mRNA|length=1034bp|location=Sequence derived from alignment at KK037247.1:347156..348189- (Nannochloropsis gaditana)
ATGCGTTTAAGAGACTGGGCGTGGCCTGTGGGCATCATTGCCACACTTTG
GGGGGCATCGCATCTAGTCTTACGGCGTGCCTACCCTGCTCCACCTCCTG
GTAATCAAGCCATCATCGTGATCTCAGGTGACGATGACAATGCCATAATT
TTCTCGTGGCTCCTTCAACTCCTCACGCCCCTCGCCCGACCCGGGTCCTC
CCTATCCCAGGCGCCTCCACGGGCATTGGGCGTCACGCTGCAGAGTATCT
TGCGCGTCTAGGTTTCACTGTCCTCGCCGGAGTGCGAAGGGAAGCCGACA
TGGAGGACTTACGGAGCGCTCACTTGCCGTCCCTTCACCCCATCATCCTT
GACGTCACCAACGCCTCGGACGTGCGAGCGGCCGTCGAACGCGCCGAAGC
CCTCGCGCCATTGCCCGTGTGGGGACTGGTGAATAACGCTGGACTCGGGT
ACCCTATTCCGGTAGAACTGGCAGACATGGAGAAGGCGCGGAAGCTCTTC
GAGGTGAATGTGCTTGCCGTGATCGGGATGGCTCAGGCCTTCGTCCCCCT
GCTTCGGAGGGCGCCAGGTGGGCGGATAGTGAATGTGGGCTCAGCAACTG
GAACTATGGCGACGCAGGGCGACGGCATCTACGCCTCTTCGAAGCACGCT
GTGGAAGGTCTGACGGACAGCATGCGCTTGGAGCTCGCAGCTTGGGAGAT
GTCCGTGTCCCTCGTCGTACCCGGTCAGGTCCAGAGCGGCATGTGGGGCA
AACTCACGGGTCAGAACGCTCCGGCAATAAACGACTTGAGCGCAGATCAA
TACGCACTATACAAACCACTTTTCCTGCAGGTAGAGAAGGCCGTCTCGGG
ATTTATACCCAAACTTTCTCCAGCCTCTGTCACTTCACAAGCAATCGCCC
ATGCGCTCATGAGTCCTCAGCCCAAGACACGATACCTGGTCGCCAGCGTA
AATGGAGTGCCTTTATGGCTACTTCGTGGTTTGTGCGGACTCCTGCCAGA
TCGAGTGGTCGATTTTGTTAAATTGCGCTTATAG
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Coding sequence (CDS) from alignment at KK037247.1:347156..348189-

>rna8011 ID=rna8011|Name=rna8011|organism=Nannochloropsis gaditana|type=CDS|length=1902bp|location=Sequence derived from alignment at KK037247.1:347156..348189- (Nannochloropsis gaditana)
GCGCCTCCACGGGCATTGGGCGTCACGCTGCAGAGTATCTTGCGCGTCTA
GGTTTCACTGTCCTCGCCGGAGTGCGAAGGGAAGCCGACATGGAGGACTT
ACGGAGCGCTCACTTGCCGTCCCTTCACCCCATCATCCTTGACGTCACCA
ACGCCTCGGACGTGCGAGCGGCCGTCGAACGCGCCGAAGCCCTCGCGCCA
TTGCCCGTGTGGGGACTGGTGAATAACGCTGGACTCGGGTACCCTATTCC
GGTAGAACTGGCAGACATGGAGAAGGCGCGGAAGCTCTTCGAGGTGAATG
TGCTTGCCGTGATCGGGATGGCTCAGGCCTTCGTCCCCCTGCTTCGGAGG
GCGCCAGGTGGGCGGATAGTGAATGTGGGCTCAGCAACTGGAACTATGGC
GACGCAGGGCGACGGCATCTACGCCTCTTCGAAGCACGCTGTGGAAGGTC
TGACGGACAGCATGCGCTTGGAGCTCGCAGCTTGGGAGATGTCCGTGTCC
CTCGTCGTACCCGGTCAGGTCCAGAGCGGCATGTGGGGCAAACTCACGGG
TCAGAACGCTCCGGCAATAAACGACTTGAGCGCAGATCAATACGCACTAT
ACAAACCACTTTTCCTGCAGGTAGAGAAGGCCGTCTCGGGATTTATACCC
AAACTTTCTCCAGCCTCTGTCACTTCACAAGCAATCGCCCATGCGCTCAT
GAGTCCTCAGCCCAAGACACGATACCTGGTCGCCAGCGTAAATGGAGTGC
CTTTATGGCTACTTCGTGGTTTGTGCGGACTCCTGCCAGATCGAGTGGTC
GATTTTGTTAAATTGCGCTTATAGATGCGTTTAAGAGACTGGGCGTGGCC
TGTGGGCATCATTGCCACACTTTGGGGGGCATCGCATCTAGTCTTACGGC
GTGCCTACCCTGCTCCACCTCCTGGTAATCAAGCCATCATCGTGATCTCA
GGCGCCTCCACGGGCATTGGGCGTCACGCTGCAGAGTATCTTGCGCGTCT
AGGTTTCACTGTCCTCGCCGGAGTGCGAAGGGAAGCCGACATGGAGGACT
TACGGAGCGCTCACTTGCCGTCCCTTCACCCCATCATCCTTGACGTCACC
AACGCCTCGGACGTGCGAGCGGCCGTCGAACGCGCCGAAGCCCTCGCGCC
ATTGCCCGTGTGGGGACTGGTGAATAACGCTGGACTCGGGTACCCTATTC
CGGTAGAACTGGCAGACATGGAGAAGGCGCGGAAGCTCTTCGAGGTGAAT
GTGCTTGCCGTGATCGGGATGGCTCAGGCCTTCGTCCCCCTGCTTCGGAG
GGCGCCAGGTGGGCGGATAGTGAATGTGGGCTCAGCAACTGGAACTATGG
CGACGCAGGGCGACGGCATCTACGCCTCTTCGAAGCACGCTGTGGAAGGT
CTGACGGACAGCATGCGCTTGGAGCTCGCAGCTTGGGAGATGTCCGTGTC
CCTCGTCGTACCCGGTCAGGTCCAGAGCGGCATGTGGGGCAAACTCACGG
GTCAGAACGCTCCGGCAATAAACGACTTGAGCGCAGATCAATACGCACTA
TACAAACCACTTTTCCTGCAGGTAGAGAAGGCCGTCTCGGGATTTATACC
CAAACTTTCTCCAGCCTCTGTCACTTCACAAGCAATCGCCCATGCGCTCA
TGAGTCCTCAGCCCAAGACACGATACCTGGTCGCCAGCGTAAATGGAGTG
CCTTTATGGCTACTTCGTGGTTTGTGCGGACTCCTGCCAGATCGAGTGGT
CGATTTTGTTAAATTGCGCTTATAGATGCGTTTAAGAGACTGGGCGTGGC
CTGTGGGCATCATTGCCACACTTTGGGGGGCATCGCATCTAGTCTTACGG
CGTGCCTACCCTGCTCCACCTCCTGGTAATCAAGCCATCATCGTGATCTC
AG
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Synonyms
Publications