EWM22688.1, cds7989 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22688.1 vs. NCBI_GenBank
Match: gi|585103254|gb|EWM22688.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 632.484 bits (1630), Expect = 0.000e+0 Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0 Query: 1 MRLRDWAWPVGIIATLWGASHLVLRRAYPAPPPGNQAIIVISGASTGIGRHAAEYLARLGFTVLAGVRREADMEDLRSAHLPSLHPIILDVTNASDVRAAVERAEALAPLPVWGLVNNAGLGYPIPVELADMEKARKLFEVNVLAVIGMAQAFVPLLRRAPGGRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLELAAWEMSVSLVVPGQVQSGMWGKLTGQNAPAINDLSADQYALYKPLFLQVEKAVSGFIPKLSPASVTSQAIAHALMSPQPKTRYLVASVNGVPLWLLRGLCGLLPDRVVDFVKLRL 316 MRLRDWAWPVGIIATLWGASHLVLRRAYPAPPPGNQAIIVISGASTGIGRHAAEYLARLGFTVLAGVRREADMEDLRSAHLPSLHPIILDVTNASDVRAAVERAEALAPLPVWGLVNNAGLGYPIPVELADMEKARKLFEVNVLAVIGMAQAFVPLLRRAPGGRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLELAAWEMSVSLVVPGQVQSGMWGKLTGQNAPAINDLSADQYALYKPLFLQVEKAVSGFIPKLSPASVTSQAIAHALMSPQPKTRYLVASVNGVPLWLLRGLCGLLPDRVVDFVKLRL Sbjct: 1 MRLRDWAWPVGIIATLWGASHLVLRRAYPAPPPGNQAIIVISGASTGIGRHAAEYLARLGFTVLAGVRREADMEDLRSAHLPSLHPIILDVTNASDVRAAVERAEALAPLPVWGLVNNAGLGYPIPVELADMEKARKLFEVNVLAVIGMAQAFVPLLRRAPGGRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLELAAWEMSVSLVVPGQVQSGMWGKLTGQNAPAINDLSADQYALYKPLFLQVEKAVSGFIPKLSPASVTSQAIAHALMSPQPKTRYLVASVNGVPLWLLRGLCGLLPDRVVDFVKLRL 316
BLAST of EWM22688.1 vs. NCBI_GenBank
Match: gi|167525509|ref|XP_001747089.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163774384|gb|EDQ88013.1| predicted protein [Monosiga brevicollis MX1]) HSP 1 Score: 216.468 bits (550), Expect = 5.757e-65 Identity = 124/310 (40.00%), Postives = 183/310 (59.03%), Query Frame = 0 Query: 7 AWPVGIIATLWGASHLVLRRAYPAPPPGNQAIIVISGASTGIGRHAAEYLARLGFTVLAGVRREADMEDLRSAHLPSLHPIILDVTNASDVRAAVERAEALAPLPVWGLVNNAGLGYPIPVELADMEKARKLFEVNVLAVIGMAQAFVPLLRRAPGGRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLELAAWEMSVSLVVPGQVQSGMWGKLTGQNAPAINDLSADQYALYKPLF-LQVEKAVSGFIPKLSPASVTSQAIAHALMSPQPKTRYLVASVNGVPLWLLRGLCGLLPDRVVDFVKLR 315 W V ++ L A + V P Q +++++GAS+GIGRHAA LA+LG+ V VR+E D D+R + +LHPII+DVTN+ ++ AVE L P+ LVNNAG+ P+E DM + R FEVN+ ++ QAF+PLL RA GRI+N+GS G + +G +Y+ +K A+EG++DS+R EL +SVSLV P V++ + K +G + A + S + +Y F + EK F +P T+ AI A+ SPQP+TRY+VA+ + +P W+ G+ LLPDR VD + R Sbjct: 4 CWSVTVVV-LAAALYAVWELPRPTYHVHEQGVVLVTGASSGIGRHAAIELAKLGYEVYGTVRKERDANDIRGLGIKTLHPIIMDVTNSEQIKNAVETISKLDQ-PLIALVNNAGISSRAPLEAYDMNRVRNTFEVNIFGLVETTQAFLPLL-RANKGRIINIGSVAGLVGMEGSAVYSGTKFALEGISDSLRRELFPLGVSVSLVEPAYVKTEIVHKSSGAQS-AEHWASKEMLEVYDHFFSVADEKRQRAFEHADTP-ECTTNAIVDAIRSPQPRTRYVVANTHKIPAWITTGMTWLLPDRAVDAIMRR 308
BLAST of EWM22688.1 vs. NCBI_GenBank
Match: gi|553194368|ref|XP_005855938.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >gi|422293111|gb|EKU20411.1| short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 208.764 bits (530), Expect = 8.798e-62 Identity = 127/306 (41.50%), Postives = 191/306 (62.42%), Query Frame = 0 Query: 18 GASHLVLRRAYPAPPPGNQAIIVISGASTGIGRHAAEYLARLGFTVLAGVRREADMEDLRSAHLPSLHPIILDVTNASD--VRAAVERAEALAPL----PVWGLVNNAGLGYPIPVELADMEKARKLFEVNVLAVIGMAQAFVPLLRRAPGGRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLELAAWEMSVSLVVPGQVQSGMWGKLTGQNAPAINDLSADQYALYKPLFLQVEKAVSGFIPKLSPASVTSQAIAHALMSPQPKTRYLVASVNGVPLWLLRGLC-GLLPDRVVDFVKLRL 316 G H + + ++P PP G+ +VI+G+STGIGRH+A LA GF V AGVRR D+E L A+ + P++LDVT+ +RAA E E L + + GLVNNAG+G +P+EL + + R++ EVNV+ ++G+ QAF+P LRR G RI+NVGSA G G Y+SSK+A+E ++D++RLEL W +SVSL+ PG ++S + K G AP +L+ QY LY+ +F E+ V +T+ AI HAL S P++RY++ + G+ LWLLR + +PD ++D+ K+++ Sbjct: 29 GLIHSMTKPSFPVPPSGSA--VVITGSSTGIGRHSAAGLAAAGFLVFAGVRRVRDVETLVEAYPGRVFPLLLDVTDHDGGVMRAAEEVRETLEDMGGKVKLAGLVNNAGIGLAMPLELLPLSRLRQVMEVNVVGLLGVTQAFLPQLRRDQG-RIINVGSAAGFTVPVTYGAYSSSKYALEAISDALRLELRPWRISVSLLEPGTIESEIRRKNVGDAAP-FKNLTESQYVLYQQIFDTYEQRVDALERAAGSPQLTTDAILHALTSSTPQSRYVLGAYQGLSLWLLRHVVLPFVPDYLLDWGKMKM 330
BLAST of EWM22688.1 vs. NCBI_GenBank
Match: gi|585103961|gb|EWM23099.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 209.149 bits (531), Expect = 2.723e-61 Identity = 127/308 (41.23%), Postives = 191/308 (62.01%), Query Frame = 0 Query: 16 LWGASHLVLRRAYPAPPPGNQAIIVISGASTGIGRHAAEYLARLGFTVLAGVRREADMEDLRSAHLPSLHPIILDVTNASD--VRAAVERAEALAPL----PVWGLVNNAGLGYPIPVELADMEKARKLFEVNVLAVIGMAQAFVPLLRRAPGGRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLELAAWEMSVSLVVPGQVQSGMWGKLTGQNAPAINDLSADQYALYKPLFLQVEKAVSGFIPKLSPASVTSQAIAHALMSPQPKTRYLVASVNGVPLWLLRGLC-GLLPDRVVDFVKLRL 316 G H + + ++P PP G+ +VI+G+STGIGRH+A LA GF V AGVRR D+E L A+ + P++LDVT+ +RAA E E L + + GLVNNAG+G +P+EL + + R++ EVNV+ ++G+ QAF+P LRR G RI+NVGSA G G Y+SSK+A+E ++D++RLEL W +SVSL+ PG ++S + K G AP +L+ QY LY+ +F E+ V +T+ AI HAL S P++RY++ + G+ LWLLR + +PD ++D+ K+++ Sbjct: 72 FLGLIHSMTKPSFPVPPSGSA--VVITGSSTGIGRHSAAGLAAAGFLVFAGVRRVRDVETLVEAYPGRVFPLLLDVTDHDGGVMRAAEEVRETLEDMGGKVKLAGLVNNAGIGLAMPLELLPLSRLRQVMEVNVVGLLGVTQAFLPQLRRDQG-RIINVGSAAGFTVPVTYGAYSSSKYALEAISDALRLELRPWRISVSLLEPGTIESEIRRKNVGDAAP-FKNLTESQYVLYQQIFDTYEQRVDALERAAGSPQLTTDAILHALTSSTPQSRYVLGAYQGLSLWLLRHVVLPFVPDYLLDWGKMKM 375
BLAST of EWM22688.1 vs. NCBI_GenBank
Match: gi|585107069|gb|EWM25314.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 202.601 bits (514), Expect = 1.650e-59 Identity = 119/296 (40.20%), Postives = 177/296 (59.80%), Query Frame = 0 Query: 22 LVLRRAYPAPPPGNQAIIVISGASTGIGRHAAEYLARLGFTVLAGVRREADMEDLRSAHLPSLHPIILDVTNASDVRAAVER--AE-ALAPLPVWGLVNNAGLGYPIPVELADMEKARKLFEVNVLAVIGMAQAFVPLLRRAPGGRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLELAAWEMSVSLVVPGQVQSGMWGKLTGQNAPAINDLSADQYALYKPLFLQVEKAVS--GFIPKLSPASVTSQAIAHALMSPQPKTRYLVASVNGVPLWLLRGLCGLLPDRVVDFV 312 + R+ +P PP G IVI+GASTGIG HAA++LAR G+ V VR+ AD+E +++ LP+L PII+DV A + E AE + +P+ GLVNNAG+ P+E + R +F+++V+ + + Q +P + RA GRIVN+ S T + Y +SK AVEG++D +R EL ++ SVS+V P V + ++ K+T Q+ ++S + Y F + EK + + K SP SVT+ AI HAL SP P TRY+VA+V+G+P + L L L PDR+ DF+ Sbjct: 35 FIFRKRFPVPPKGGA--IVITGASTGIGNHAAQHLARQGYIVYCTVRKPADVEAIQALGLPNLRPIIMDVAQAKSIENGAETILAELSKNNIPLIGLVNNAGVAQKFPLEFHPLTDLRSMFDIHVIGPLELTQRLLPAI-RANKGRIVNLSSITALVLLPTGAAYGASKLAVEGISDGLRRELVDFDCSVSIVQPAYVNTAIFKKVT-QSIDTKVEVSPEIMTTYG-YFFRTEKRIKDRAAVDKASPPSVTTDAITHALTSPYPHTRYIVANVSGIPAFWLGWLVWLCPDRLADFI 325
BLAST of EWM22688.1 vs. NCBI_GenBank
Match: gi|553194466|ref|XP_005855962.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >gi|422293105|gb|EKU20405.1| short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 200.675 bits (509), Expect = 2.555e-58 Identity = 127/298 (42.62%), Postives = 171/298 (57.38%), Query Frame = 0 Query: 39 IVISGASTGIGRHAAEYLARLGFTVLAGVRREADMEDLRSAHLPS---------------------LHPIILDVTN----ASDVRAAVERAEALAPLPVWGLVNNAGL-GYPIPVELADMEKARKLFEVNVLAVIGMAQAFVPLLRRAPGGRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLELAAWEMSVSLVVPGQVQSGMWGKLTGQNAPAINDLSADQYALYKPLFLQVEKAVSGFIPKLSPASVTSQAIAHALMSPQPKTRYLVASVNGVPLWLLRGLCGLLPDRVVD 310 ++++GASTGIGRHAA YLAR GF V AGVR+ AD E L A+L LH +ILD+T A+ VR+ E LP GLVNNAG+ G PVE +E R FEVN + + QAF+PLLR+AP GRI+NV S G + Y+ +K A+E L+D++R+EL +SVS++ PG ++S ++GK Q+ + +L + ALY L+ V+K + I K S V S+AI HAL SP PKTRYLV +VNG P + L LL DR++D Sbjct: 54 VLVTGASTGIGRHAAFYLARQGFLVFAGVRKPADGEALLKAYLDEESKQTSKSRSRGKVSPAKQGVLHYLILDITKPFQIAAAVRSVQEELSRRGGLPFLGLVNNAGVTGGADPVEFLPLEHNRNTFEVNFYGPLAVTQAFLPLLRQAPQGRIINVSSMAGIVTRPLGATYSCTKFALEALSDTLRVELGHLGVSVSVIQPGYIRSEIFGKADEQHQHRMQELPEECSALYGHLY-TVDK-TNALIAKASDPIVCSRAIHHALTSPYPKTRYLVGNVNGTPAYWLGWGIWLLNDRLMD 349
BLAST of EWM22688.1 vs. NCBI_GenBank
Match: gi|585111466|gb|EWM28976.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 200.675 bits (509), Expect = 3.570e-58 Identity = 128/298 (42.95%), Postives = 171/298 (57.38%), Query Frame = 0 Query: 39 IVISGASTGIGRHAAEYLARLGFTVLAGVRREADMEDLRSAHLPS---------------------LHPIILDVTN----ASDVRAAVERAEALAPLPVWGLVNNAGL-GYPIPVELADMEKARKLFEVNVLAVIGMAQAFVPLLRRAPGGRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLELAAWEMSVSLVVPGQVQSGMWGKLTGQNAPAINDLSADQYALYKPLFLQVEKAVSGFIPKLSPASVTSQAIAHALMSPQPKTRYLVASVNGVPLWLLRGLCGLLPDRVVD 310 ++++GASTGIGRHAA YLAR GF V AGVR+ AD E L A+L LH +ILD+T A+ VR+ E LP GLVNNAG+ G PVE +E R FEVN + + QAF+PLLR+AP GRIVNV S G + Y+ +K A+E L+D++R+EL +SVS++ PG ++S ++GK Q+ + +L + ALY L+ V+K + I K S V S+AI HAL SP PKTRYLV +VNG P + L LL DR++D Sbjct: 65 VLVTGASTGIGRHAAFYLARQGFLVFAGVRKPADGEALLRAYLDEESKQTSKSRSRGKVSPAKQGVLHFLILDITKPFQIAAAVRSVQEELSRRGGLPFLGLVNNAGVTGGADPVEFLPLEHNRNTFEVNFYGPLAVTQAFLPLLRQAPQGRIVNVSSMAGIVTRPLGATYSCTKFALEALSDTLRVELGHLGVSVSVIQPGYIRSEIFGKADEQHQHRMQELPVECSALYGHLY-TVDK-TNALIAKASDPIVCSRAIHHALTSPYPKTRYLVGNVNGTPAYWLGWGIWLLNDRLMD 360
BLAST of EWM22688.1 vs. NCBI_GenBank
Match: gi|504942330|ref|WP_015129432.1| (retinol dehydrogenase [Calothrix sp. PCC 7507] >gi|427350899|gb|AFY33623.1| Retinol dehydrogenase [Calothrix sp. PCC 7507]) HSP 1 Score: 195.667 bits (496), Expect = 2.821e-57 Identity = 116/276 (42.03%), Postives = 160/276 (57.97%), Query Frame = 0 Query: 36 QAIIVISGASTGIGRHAAEYLARLGFTVLAGVRREADMEDLRSAHLPSLHPIILDVTNASDVRAAVERAE-ALAPLPVWGLVNNAGLGYPIPVELADMEKARKLFEVNVLAVIGMAQAFVPLLRRAPGGRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLELAAWEMSVSLVVPGQVQSGMWGKLTGQNAPAINDLSADQYALYKPLFLQVEKAVSGFIPKLSPASVTSQAIAHALMSPQPKTRYLVASVNGVPLWLLRGLCGLLPDRVVD 310 Q +VI+GASTGIG A L +LGF+V AGVR++ D E L+ P L PI LDVT+ + +AVE A+ ++GLVNNAG+ P P+EL + + R EVNV+ + + QAF+ LLR+ G RIVN+GS +G A G Y +SK A+EGLTD+MR+EL W +SVS++ P + + +W K GQ +LS LY V K++ K PA +Q++ HAL + PKTRYLV + +L R LPD+V D Sbjct: 6 QRAVVITGASTGIGEACALLLDKLGFSVFAGVRKDVDAEALKQKASPRLRPIFLDVTDPQSIISAVETVNNAVGDRGIFGLVNNAGIAVPGPLELLPIAEFRHQIEVNVIGQLAVTQAFLGLLRQGQG-RIVNMGSISGRSAAPFLGAYNASKFALEGLTDAMRMELRPWGISVSIIEPSAIATPIWEKSLGQADIGQENLSQSNLDLYGNTMKAVRKSMGIIASKGIPADTVAQSVVHALTAKHPKTRYLVGQDAKIGAFLKR----FLPDKVYD 276
BLAST of EWM22688.1 vs. NCBI_GenBank
Match: gi|514686056|ref|XP_004990606.1| (oxidoreductase [Salpingoeca rosetta] >gi|326431692|gb|EGD77262.1| oxidoreductase [Salpingoeca rosetta]) HSP 1 Score: 195.282 bits (495), Expect = 1.139e-56 Identity = 122/307 (39.74%), Postives = 183/307 (59.61%), Query Frame = 0 Query: 10 VGIIATLWGASHLVLRRAYPAP--PPGNQAIIVISGASTGIGRHAAEYLARLGFTVLAGVRREADMEDLRSAHLPSLHPIILDVTNASDVRAAVERAEALAPLPVWGLVNNAGLGYPIPVELADMEKARKLFEVNVLAVIGMAQAFVPLLRRAPGGRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLELAAWEMSVSLVVPGQVQSGMWGKLTGQNAPA--INDLSADQYALYKPLFLQVEKAVSGFIPKLSPASVTSQAIAHALMSPQPKTRYLVASVNGVPLWLLRGLCGLLPDRVVDFV 312 +GI+A L L L +P P + I+I+G STGIGRHAA LA+ G+TV A VR++AD++ L+ + +L PI++DVT + +AV+ + + GLVNNAG+ +P+E D+++ R +FEVNV V+ + QAF+P++R GRIVNVGS G +A G Y+++K +EGL D++R E+A + +SVS+V P V + + K TG+ A ++ D YA + F EK + G P VT++AI HAL S P+TRY+VA+ G+P + + LLPDR+ D V Sbjct: 10 MGILAVL-----LYLLFVFPVKYFPVHDSGAILITGTSTGIGRHAAVELAKKGYTVYATVRKQADVDSLKKEGVNTLIPIVMDVTKPDQIASAVDTIKK-GGHKLIGLVNNAGISARVPLEAHDLDRIRSMFEVNVFGVVSVTQAFLPMIRENK-GRIVNVGSLAGFIAMPGSASYSATKFGLEGLNDALRREMAPFGVSVSIVEPAYVSTAIASKSTGEAAATRWVSREMQDTYAWFFADF--EEKRLKGEALADGP-EVTTKAITHALTSRTPETRYIVANTYGIPAKIAALINWLLPDRLGDIV 306
BLAST of EWM22688.1 vs. NCBI_GenBank
Match: gi|553192526|ref|XP_005855590.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >gi|422293482|gb|EKU20782.1| short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 193.741 bits (491), Expect = 3.406e-56 Identity = 123/289 (42.56%), Postives = 169/289 (58.48%), Query Frame = 0 Query: 25 RRAYPAPPPGNQAIIVISGASTGIGRHAAEYLARLGFTVLAGVRREADMEDLRSAHLPSLHPIILDVTNASDVRAAVERAEALAP---LPVWGLVNNAGLGYPIPVELADMEKARKLFEVNVLAVIGMAQAFVPLLRRAPGGRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLELAAWEMSVSLVVPGQVQSGMWGKLTGQNAPAINDLSADQYALYKPLFLQVEKAVSGFIPKLSPASVTSQAIAHALMSPQPKTRYLVASVNGVPLWLLRGLCGLLPDRVVD 310 RR YP PP G A+ V+SGASTGIG AA +LA F V AGVR+E D E LRS +L P+ILDVT+ + A + A A +PVWGLVNNAG+ VE D+ +K+++VNV V+ + Q F+PLLR A GRIV + S G + Y SSKHA+E L+D +RLELA + +SV++V PG V+S ++ K Q+A L+ D L + E + + K T++AI ALM PKTR +VA+++G+P + +LPDRV+D Sbjct: 23 RREYPTPPSGGAAV-VLSGASTGIGYDAAVHLAD-DFVVYAGVRKEKDAEMLRSVGKSTLVPVILDVTSQDSIDEAYVKITADAAERGIPVWGLVNNAGIMTASTVEHHDVAGMQKIYDVNVWGVLRLTQKFLPLLR-AQAGRIVQISSIAGFLTIPRASGYCSSKHALESLSDGLRLELAHYNVSVTVVQPGAVRSAIFEK--SQSASQAK-LAEDPRELKVYGHMIKEGSTDSIMAKADTPDCTTKAIRQALMDRYPKTREVVANIDGLPAIFAHYMKHMLPDRVLD 305 The following BLAST results are available for this feature:
BLAST of EWM22688.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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