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Properties
| Property Name | Value |
|---|
| Product | rna-binding protein 42 |
| Orig transcript id | gnl|cribi|Naga_100218g6.5297.mrna |
| Orig protein id | gnl|cribi|Naga_100218g6.5297 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037247.1 | supercontig | KK037247.1:342996..344735 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8010 ID=rna8010|Name=rna8010|organism=Nannochloropsis gaditana|type=mRNA|length=3720bp
ATGCTCGACCCTGCCCTTTCGGCCGAGTCGCAGTGTGAGGACCTACGTCC
CGACGAATGGGTATACCTAGCTGAGGGAAATCTCCATGTCCTTCTGGCCT
ATCGCGGCCAGTGCGCGCGTTTTCGAGATCATGTTCTGCGTCTCCTGAAG
GTGCGACATGGTGGGGAAAAGAAGGCGCTATACGACCCACGTCAAGAGCG
GCACTATGTAGAGCATGTGGTGGGACCTGTGCTCGGGCACCAGTACCTTG
AAACGGGCACCTCTTTGACGGTAACGCCCTCATTTTTGAACGAGGTGGCG
ATACAAATCATGCCTCACCGCCCCGCACGACGTGCTGTGTACGACCTGGA
TAAAACTGCCTGTACAGTGGAGTGCCTAAGGGATCTGACCCGTTTTTTCC
CCCCAATGCCGCACGCAACCTTGACCGCCCCGCCCACCTGCCAGCTCACC
CTCGAAATCAAACCCAAAGCCGGGTATCATTCCCGGAGCCGACTCGTCCC
TCCCGCGCGGCGATTTAAGTTTCAGGAGAGTCGATTCTCGCTCATGCAGC
GCTATCGCTTTGCGGTCTTGGAGACCCAGGCTCTGGAGCCCGAGTGGGGG
GATCTCAGGGAGGGCCCCAACTGGGGATACTCGCCTCCGGACCTCTTCTC
AGGAGAGGTGGAGAAGATGACGAGGACGCTGCAGGCCCTGATTCGGAACC
CGCAAATTTTTTTTCAATTTTTTGTGGGTCCCCGGCTCGTGTACGGTCGT
GGAGAGCGGCAGGTGGGGCTGGCGCGGAATGCGGCCCGCCAGCTTTTGCT
CCCAGGGGGGGCATGCGCCGAGGGCTTCGGGGCCGAGAGCGAGGAGGACC
CGTTGGATACCTTGATGGAGGCGGTGGCGCAGGTGCTGCAGCAAGAATGC
TTGCTGCCCCGGCTGCTGAGCTTGCAGCGCCTGGACGTGCTTGACGTGGA
GGGGGCGGGGGCCGTAATGGAGAGGCTGGTGGAGCTCTGTGGGGGGGAGG
AGGCAGCGGCCCAGGCGCTGCTGCAAGAGGAGGTCTTGCAAGCTCGCCTG
CTTAGGACAGGAGCGGAGGAGGAGGGGCCGGGCGGAGAGTCGATGTCCGC
GATGGCGCGGCGCCTGGAGGCGGCGCTGGGACTGGGCCCTTGCGGCGCAC
GAGGAGGGTCAGGGAAGGGCTCTACCTGCGAGGGGGAGCCTGCGGGCTTC
GTTCTGGAGCAGCAGCACAAGGAGGCCCTGGCCACTGTCCAGCGCCTGAG
TCAAGCCGAATGTCTCTTCCTTCTGCACCGTTGGCTCATCGCCCTGGGGG
CCAGCGACTGCAGCATCATGCTCGCGATCCGCCGGTGCCCAGATGAGGCC
GCCCTCCCCCTCACGCGGTTCTCCCCGGTCCTAGGTCAGGATGCCTCTTC
CTTGCAGCCCCTCGAGAGCTTCTGCCAGAGCGCTTCAGAGCCGGGCCTGC
TCTCCTTCCGGCCCACGCCTCCCGCCCAGGGGGGAAGGGAGAGAGGGGCC
GTTCGTCTGGCCTACGCCATGCATGTGGTGGACCTGGGGCCCAAGCCACC
CACGAAGGTTCTCTCGAAAGCGCGCCTGGAGGACGGGATCATTGCGGCGG
CTCAGAGAGCGGGCTCCAGCGCAAAAGAGGCCAGCCAGAGGTCCTCAGGC
GCAGTAAGCACGCACTGAAAAGGGGCGTTCGATCGAACGGAAAGGAATAA
TAAGGGTCCAGGACCATTTCGGCCGACGAGCGTGTCGTTCTTTGGTCGCA
TTGTCTTGGATGAGGCTTCCTCTCTTCGCTTTACAGCATGCGTCTTCCTC
GCTCACCCCAAACCCAGCTTGCTCAAAAATTTCTTCTTGCTCTTCTCCTT
CTTGCGGACCTCCTTCAAGTCCCTCTCTTTCCAATCGCACTTGCGCAGCT
TCACGGGTCGACTCCCCACATACTTCCCGTTCATCTCTCGCAGGGCCTTG
AGCCCCTCCAGCGGGTCCAGAAAGGAGACGAAGCCGTAGCCTCGCGACTT
GCCTGTGCCCCTGTCGCGGAGCACCTTGGCCTTGGCGAAGGAGGGGTACT
TGCCTCGGAAGGCGTTCGTCAGATGCTGCGAGGGGTCGGCGAAGGAGAAG
AAAGAGAGAGGGAAGGAAGGGGAGGGAGGTAATGAGGAGAGCCGGGCCAG
TCAAGCAGTCGCCGAGGCGCGCAGACAGAGGTAGCTGAGACAGGGCCCAC
AGCCAGGCATCGACACGGAAAGGCCGACGGATGAGGCGCCGCCATGAGGG
ACACTGCAGACACTCACCTCGTCGGTCACTTCCGGGCCCAGATCCCCGCA
GAAAATGCGGAAGTCGTCTGTACACAAGTGTCACTGGGAGTCAGCCTGCC
TGCCCGACTCCCACTGACATCACATCCCCGTCCACCCACGCCCCTCCCTT
CACCTACGTACTTTCAGGCCACTCGTTCAGCGTCGGATCCTCCCACGTCT
GGCCGGGCCCGACGCGGATGAACTTCTTGGGCTTGCCAGCCTCCGTTTGA
CCCTGCGTGCCCCCTCCTGGCCTCGGCCCTCCCCCTGGTCTTGGCTGTTG
ACCCGCCCCCCATGTCCCCGCTGCGGGCTTGGCACCTGCTCCCACAGTGA
AGAGAGTACCCACGCCAGCGCCGGCCACAGCCTGAGGCGGCGCTGTAGTC
CCAGAATAGGGGCCCGAGAAGTCTTGCGAAGCAGTAACAGAGCTTGACGG
AGCGGGCACACTGGACTCCGGCCTAGCCCGGGTCGGAGCGGCAGAGACGG
ATATCGCCGGAGCGAAGGCCGATGGCTTTTCCTGCGTTCCAGATGACGAA
TAGGGAGATGCCAACGGGGCGGAGGCCGTGGGAGTGTGCGACCCGTCACC
GTCGCCGGCCGTGCCGTAGAGCAGGGGCTTGGCTGCAGCGGCCTTGGCCT
TCTTGAAAGCCGGATGGTGCGAGGGAGGCATGGTGGGGCCAATGTCATGA
CTTACATTTTCGGGTTCTTCGTCTGCGAATGCAATGGGTGGGTGAACAAA
CCGAAAAAGTAGCATGGTGTAAGGAAATCGGTAGCATACTAGCACCGATT
CTTCTACACCATATCAGTTTTTGGACGGCAGTTCAAGCCCCCCTACTCCT
GTAAAGGAAAACAAAACTCACCACGGCCTCTTTTTCCAGAAGCATTTAAT
GTAGTTGAGCCCAGGTGGCGCCCGTCCTGATGTTCTGGCGCCTCGCCTTC
TCCTGCATTGGGCCCCGCCTCCTCTTCAGGCGCCTTGACCTCTTTGAGCT
CATTGAAAAAACCAAACAGGTCGTCATCCGCCATGACTGCACAGTGAAAC
TACCTGGCTATGCATATACATATATCGAGGGGAGTTGAGAGGTGCGGGGA
TACAAAGCGCCTTATTTGCGGGGGACCGCCATTTCTCAGGCCCTGATTGC
ACTAGGATGATGCCGGAGCAGGCGCCAGTGACGTCATGACCGATTGCTAT
CTCCGAGGGAAAACGTTCCTGTCTTTGCCCGTACTGCCTCACTGGCGCGT
GGGCACGACAAGGACGTTGCGATCTTCCCGATATTAAAGACGTCGTTGAT
GTGGTGGCAGGTTACAATAATGGACCTTACACAATTGCACTGGAAGGGGT
TTGTCGCAAACGAGGTCTTTCAACAAACAAAACCGGGCTGACAAGAAAAG
CGTTTTTATGTTGATTGTTTGCGGTACGTTTCATTCCATAGTGTACATAA
GAAAAAATCCATAAATCGGT back to topprotein sequence of rna8010 >rna8010-protein ID=rna8010-protein|Name=rna8010|organism=Nannochloropsis gaditana|type=polypeptide|length=348bp
MADDDLFGFFNELKEVKAPEEEAGPNAGEGEAPEHQDGRHLGSTTLNASG
KRGRDEEPENVSHDIGPTMPPSHHPAFKKAKAAAAKPLLYGTAGDGDGSH
TPTASAPLASPYSSSGTQEKPSAFAPAISVSAAPTRARPESSVPAPSSSV
TASQDFSGPYSGTTAPPQAVAGAGVGTLFTVGAGAKPAAGTWGAGQQPRP
GGGPRPGGGTQGQTEAGKPKKFIRVGPGQTWEDPTLNEWPENDFRIFCGD
LGPEVTDEHLTNAFRGKYPSFAKAKVLRDRGTGKSRGYGFVSFLDPLEGL
KALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKSKKKFLSKLGLG back to topmRNA from alignment at KK037247.1:342996..344735+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8010 ID=rna8010|Name=rna8010|organism=Nannochloropsis gaditana|type=mRNA|length=1740bp|location=Sequence derived from alignment at KK037247.1:342996..344735+ (Nannochloropsis gaditana)
GCGGTCCCCCGCAAATAAGGCGCTTTGTATCCCCGCACCTCTCAACTCCC
CTCGATATATGTATATGCATAGCCAGGTAGTTTCACTGTGCAGTCATGGC
GGATGACGACCTGTTTGGTTTTTTCAATGAGCTCAAAGAGGTCAAGGCGc
ctgaagaggaggcggggcccaatgcaggagaaggcgaggcgcCAGAACAT
CAGGACGGGCGCCACCTGGGCTCAACTACATTAAATGCttctggaaaaag
aggccgTGGTGAGTTTTGTTTTCCTTTACAGGAGTAGGGGGGCTTGAACT
GCCGTCCAAAAACTGATATGGTGTAGAAGAATCGGTGCTAGTATGCTACC
GATTTCCTTACACCATGCTACTTTTTCGGTTTGTTCACCCACCCATTGCA
TTCGCAGACGAAGAACCCGAAAATGTAAGTCATGACATTGGCCccaccat
gcctccctcgcacCATCCGGCTTTcaagaaggccaaggccgcTGCAGCCA
AGCCCCTGCTCTACGGCACGGCCGGCGACGGTGACGGGTCGCACActccc
acggcctccgccccgttGGCATCTCCCTATTCGTCATCTGGAACGCAGGA
AAAGCCATCGGCCTTCGCTCCGGCGATATCCGTCTCTGCCGCTCCGACCC
GGGCTAGGCCGGAGTCCAGTGTGCCCGCTCCGTCAAGCTCTGTTACTGCT
TCGCAAGACTTCTCGGGCCCCTATTCTGGGACTACAGCGCCGCCTCAGGC
TGTGGCCGGCGCTGGCGTGGGTACTCTCTTCACTGTGGGAGCAGGTGCCA
AGCCCGCAGCGGGGACATGGGGGGCGGGTCAACAGCCAAgaccaggggga
gggccgaggccaggagggggcaCGCAGGGTCAAACGGAGGCTGGCAAGCC
CAAGAAGTTCATCCGCGTCGGGCCCGGCCAGACGTGGGAGGATCCGACGC
TGAACGAGTGGCCTGAAAGTACGTaggtgaagggaggggcgtgggtgGAC
GGGGATGTGATGTCAGTGGGAGTCGGGCAGGCAGGCTGACTCCCAGTGAC
ACTTGTGTACAGACGACTTCCGCATTTTCTGCGGGGATCTGGGCCCGGAA
GTGACCGACGAGGTGAGTGTCTGCAGTGTCCCTCATGGCGGCGCCTCATC
CGTCGGCCTTTCCGTGTCGATGCCTGGCTGTGGGCCCTGTCTCAGCTACC
TCTGTCTGCGCGCCTCGGCGACTGCTTGACTGGCCCGGCTCTCCTCatta
cctccctccccttccttccctctctctttcttctccttcgccgACCCCTC
GCAGCATCTGACGAACGCCTTCCGAGGCAAgtacccctccttcgccaagg
CCAAGGTGCTCCGCGACAGGGGCACAGGCAAGTCGCGAGGCTACggcttc
gtctcctttctGGACCCGCTGGAGGGGCTCAAGGCCCTGCGAGAGATGAA
CGGGAAGTATGTGGGGAGTCGACCCGTGAAGCTGCGCAAGTGCGattgga
aagagagggacttgaaggaggtccgcaagaaggagaagagcaagaagaaa
tTTTTGAGCAAGCTGGGTTTGGGGtgagcgaggaagacgcaTGCTGTAAA
GCGAAGAGAGGAAGCCTCATCCAAGACAATGCGACCAAAGAACGACACGC
TCGTCGGCCGAAATGGTCCTGGACCCTTATTATTCCTTTCCGTTCGATCG
AACGCCCCTTTTCAGTGCGTGCTTACTGCGCCTGAGGACC back to topCoding sequence (CDS) from alignment at KK037247.1:342996..344735+ >rna8010 ID=rna8010|Name=rna8010|organism=Nannochloropsis gaditana|type=CDS|length=4188bp|location=Sequence derived from alignment at KK037247.1:342996..344735+ (Nannochloropsis gaditana)
ATGGCGGATGACGACCTGTTTGGTTTTTTCAATGAGCTCAAAGAGGTCAA
GGCGcctgaagaggaggcggggcccaatgcaggagaaggcgaggcgcCAG
AACATCAGGACGGGCGCCACCTGGGCTCAACTACATTAAATGCttctgga
aaaagaggccgTGACGAAGAACCCGAAAATGTAAGTCATGACATTGGCCc
caccatgcctccctcgcacCATCCGGCTTTcaagaaggccaaggccgcTG
CAGCCAAGCCCCTGCTCTACGGCACGGCCGGCGACGGTGACGGGTCGCAC
ActcccacggcctccgccccgttGGCATCTCCCTATTCGTCATCTGGAAC
GCAGGAAAAGCCATCGGCCTTCGCTCCGGCGATATCCGTCTCTGCCGCTC
CGACCCGGGCTAGGCCGGAGTCCAGTGTGCCCGCTCCGTCAAGCTCTGTT
ACTGCTTCGCAAGACTTCTCGGGCCCCTATTCTGGGACTACAGCGCCGCC
TCAGGCTGTGGCCGGCGCTGGCGTGGGTACTCTCTTCACTGTGGGAGCAG
GTGCCAAGCCCGCAGCGGGGACATGGGGGGCGGGTCAACAGCCAAgacca
gggggagggccgaggccaggagggggcaCGCAGGGTCAAACGGAGGCTGG
CAAGCCCAAGAAGTTCATCCGCGTCGGGCCCGGCCAGACGTGGGAGGATC
CGACGCTGAACGAGTGGCCTGAAAACGACTTCCGCATTTTCTGCGGGGAT
CTGGGCCCGGAAGTGACCGACGAGCATCTGACGAACGCCTTCCGAGGCAA
gtacccctccttcgccaaggCCAAGGTGCTCCGCGACAGGGGCACAGGCA
AGTCGCGAGGCTACggcttcgtctcctttctGGACCCGCTGGAGGGGCTC
AAGGCCCTGCGAGAGATGAACGGGAAGTATGTGGGGAGTCGACCCGTGAA
GCTGCGCAAGTGCGattggaaagagagggacttgaaggaggtccgcaaga
aggagaagagcaagaagaaatTTTTGAGCAAGCTGGGTTTGGGGtgaATG
GCGGATGACGACCTGTTTGGTTTTTTCAATGAGCTCAAAGAGGTCAAGGC
GcctgaagaggaggcggggcccaatgcaggagaaggcgaggcgcCAGAAC
ATCAGGACGGGCGCCACCTGGGCTCAACTACATTAAATGCttctggaaaa
agaggccgTGACGAAGAACCCGAAAATGTAAGTCATGACATTGGCCccac
catgcctccctcgcacCATCCGGCTTTcaagaaggccaaggccgcTGCAG
CCAAGCCCCTGCTCTACGGCACGGCCGGCGACGGTGACGGGTCGCACAct
cccacggcctccgccccgttGGCATCTCCCTATTCGTCATCTGGAACGCA
GGAAAAGCCATCGGCCTTCGCTCCGGCGATATCCGTCTCTGCCGCTCCGA
CCCGGGCTAGGCCGGAGTCCAGTGTGCCCGCTCCGTCAAGCTCTGTTACT
GCTTCGCAAGACTTCTCGGGCCCCTATTCTGGGACTACAGCGCCGCCTCA
GGCTGTGGCCGGCGCTGGCGTGGGTACTCTCTTCACTGTGGGAGCAGGTG
CCAAGCCCGCAGCGGGGACATGGGGGGCGGGTCAACAGCCAAgaccaggg
ggagggccgaggccaggagggggcaCGCAGGGTCAAACGGAGGCTGGCAA
GCCCAAGAAGTTCATCCGCGTCGGGCCCGGCCAGACGTGGGAGGATCCGA
CGCTGAACGAGTGGCCTGAAAACGACTTCCGCATTTTCTGCGGGGATCTG
GGCCCGGAAGTGACCGACGAGCATCTGACGAACGCCTTCCGAGGCAAgta
cccctccttcgccaaggCCAAGGTGCTCCGCGACAGGGGCACAGGCAAGT
CGCGAGGCTACggcttcgtctcctttctGGACCCGCTGGAGGGGCTCAAG
GCCCTGCGAGAGATGAACGGGAAGTATGTGGGGAGTCGACCCGTGAAGCT
GCGCAAGTGCGattggaaagagagggacttgaaggaggtccgcaagaagg
agaagagcaagaagaaatTTTTGAGCAAGCTGGGTTTGGGGtgaATGGCG
GATGACGACCTGTTTGGTTTTTTCAATGAGCTCAAAGAGGTCAAGGCGcc
tgaagaggaggcggggcccaatgcaggagaaggcgaggcgcCAGAACATC
AGGACGGGCGCCACCTGGGCTCAACTACATTAAATGCttctggaaaaaga
ggccgTGACGAAGAACCCGAAAATGTAAGTCATGACATTGGCCccaccat
gcctccctcgcacCATCCGGCTTTcaagaaggccaaggccgcTGCAGCCA
AGCCCCTGCTCTACGGCACGGCCGGCGACGGTGACGGGTCGCACActccc
acggcctccgccccgttGGCATCTCCCTATTCGTCATCTGGAACGCAGGA
AAAGCCATCGGCCTTCGCTCCGGCGATATCCGTCTCTGCCGCTCCGACCC
GGGCTAGGCCGGAGTCCAGTGTGCCCGCTCCGTCAAGCTCTGTTACTGCT
TCGCAAGACTTCTCGGGCCCCTATTCTGGGACTACAGCGCCGCCTCAGGC
TGTGGCCGGCGCTGGCGTGGGTACTCTCTTCACTGTGGGAGCAGGTGCCA
AGCCCGCAGCGGGGACATGGGGGGCGGGTCAACAGCCAAgaccaggggga
gggccgaggccaggagggggcaCGCAGGGTCAAACGGAGGCTGGCAAGCC
CAAGAAGTTCATCCGCGTCGGGCCCGGCCAGACGTGGGAGGATCCGACGC
TGAACGAGTGGCCTGAAAACGACTTCCGCATTTTCTGCGGGGATCTGGGC
CCGGAAGTGACCGACGAGCATCTGACGAACGCCTTCCGAGGCAAgtaccc
ctccttcgccaaggCCAAGGTGCTCCGCGACAGGGGCACAGGCAAGTCGC
GAGGCTACggcttcgtctcctttctGGACCCGCTGGAGGGGCTCAAGGCC
CTGCGAGAGATGAACGGGAAGTATGTGGGGAGTCGACCCGTGAAGCTGCG
CAAGTGCGattggaaagagagggacttgaaggaggtccgcaagaaggaga
agagcaagaagaaatTTTTGAGCAAGCTGGGTTTGGGGtgaATGGCGGAT
GACGACCTGTTTGGTTTTTTCAATGAGCTCAAAGAGGTCAAGGCGcctga
agaggaggcggggcccaatgcaggagaaggcgaggcgcCAGAACATCAGG
ACGGGCGCCACCTGGGCTCAACTACATTAAATGCttctggaaaaagaggc
cgTGACGAAGAACCCGAAAATGTAAGTCATGACATTGGCCccaccatgcc
tccctcgcacCATCCGGCTTTcaagaaggccaaggccgcTGCAGCCAAGC
CCCTGCTCTACGGCACGGCCGGCGACGGTGACGGGTCGCACActcccacg
gcctccgccccgttGGCATCTCCCTATTCGTCATCTGGAACGCAGGAAAA
GCCATCGGCCTTCGCTCCGGCGATATCCGTCTCTGCCGCTCCGACCCGGG
CTAGGCCGGAGTCCAGTGTGCCCGCTCCGTCAAGCTCTGTTACTGCTTCG
CAAGACTTCTCGGGCCCCTATTCTGGGACTACAGCGCCGCCTCAGGCTGT
GGCCGGCGCTGGCGTGGGTACTCTCTTCACTGTGGGAGCAGGTGCCAAGC
CCGCAGCGGGGACATGGGGGGCGGGTCAACAGCCAAgaccagggggaggg
ccgaggccaggagggggcaCGCAGGGTCAAACGGAGGCTGGCAAGCCCAA
GAAGTTCATCCGCGTCGGGCCCGGCCAGACGTGGGAGGATCCGACGCTGA
ACGAGTGGCCTGAAAACGACTTCCGCATTTTCTGCGGGGATCTGGGCCCG
GAAGTGACCGACGAGCATCTGACGAACGCCTTCCGAGGCAAgtacccctc
cttcgccaaggCCAAGGTGCTCCGCGACAGGGGCACAGGCAAGTCGCGAG
GCTACggcttcgtctcctttctGGACCCGCTGGAGGGGCTCAAGGCCCTG
CGAGAGATGAACGGGAAGTATGTGGGGAGTCGACCCGTGAAGCTGCGCAA
GTGCGattggaaagagagggacttgaaggaggtccgcaagaaggagaaga
gcaagaagaaatTTTTGAGCAAGCTGGGTTTGGGGtga back to top
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