EWM22685.1, cds7988 (CDS) Nannochloropsis gaditana

Overview
NameEWM22685.1
Unique Namecds7988
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:343091..343253 +
Alignment locationKK037247.1:343403..343963 +
Alignment locationKK037247.1:344058..344107 +
Alignment locationKK037247.1:344300..344572 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22685.1
Productrna-binding protein 42
Orig transcript idgnl|cribi|Naga_100218g6.5297.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:343091..343253 +
KK037247.1supercontigKK037247.1:343403..343963 +
KK037247.1supercontigKK037247.1:344058..344107 +
KK037247.1supercontigKK037247.1:344300..344572 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
[Close]
BLAST of EWM22685.1 vs. NCBI_GenBank
Match: gi|585103251|gb|EWM22685.1| (rna-binding protein 42 [Nannochloropsis gaditana])

HSP 1 Score: 699.893 bits (1805), Expect = 0.000e+0
Identity = 348/348 (100.00%), Postives = 348/348 (100.00%), Query Frame = 0 
Query:    1 MADDDLFGFFNELKEVKAPEEEAGPNAGEGEAPEHQDGRHLGSTTLNASGKRGRDEEPENVSHDIGPTMPPSHHPAFKKAKAAAAKPLLYGTAGDGDGSHTPTASAPLASPYSSSGTQEKPSAFAPAISVSAAPTRARPESSVPAPSSSVTASQDFSGPYSGTTAPPQAVAGAGVGTLFTVGAGAKPAAGTWGAGQQPRPGGGPRPGGGTQGQTEAGKPKKFIRVGPGQTWEDPTLNEWPENDFRIFCGDLGPEVTDEHLTNAFRGKYPSFAKAKVLRDRGTGKSRGYGFVSFLDPLEGLKALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKSKKKFLSKLGLG 348
            MADDDLFGFFNELKEVKAPEEEAGPNAGEGEAPEHQDGRHLGSTTLNASGKRGRDEEPENVSHDIGPTMPPSHHPAFKKAKAAAAKPLLYGTAGDGDGSHTPTASAPLASPYSSSGTQEKPSAFAPAISVSAAPTRARPESSVPAPSSSVTASQDFSGPYSGTTAPPQAVAGAGVGTLFTVGAGAKPAAGTWGAGQQPRPGGGPRPGGGTQGQTEAGKPKKFIRVGPGQTWEDPTLNEWPENDFRIFCGDLGPEVTDEHLTNAFRGKYPSFAKAKVLRDRGTGKSRGYGFVSFLDPLEGLKALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKSKKKFLSKLGLG
Sbjct:    1 MADDDLFGFFNELKEVKAPEEEAGPNAGEGEAPEHQDGRHLGSTTLNASGKRGRDEEPENVSHDIGPTMPPSHHPAFKKAKAAAAKPLLYGTAGDGDGSHTPTASAPLASPYSSSGTQEKPSAFAPAISVSAAPTRARPESSVPAPSSSVTASQDFSGPYSGTTAPPQAVAGAGVGTLFTVGAGAKPAAGTWGAGQQPRPGGGPRPGGGTQGQTEAGKPKKFIRVGPGQTWEDPTLNEWPENDFRIFCGDLGPEVTDEHLTNAFRGKYPSFAKAKVLRDRGTGKSRGYGFVSFLDPLEGLKALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKSKKKFLSKLGLG 348
[Close]
BLAST of EWM22685.1 vs. NCBI_GenBank
Match: gi|951549387|ref|XP_014474677.1| (PREDICTED: RNA-binding protein 42 [Dinoponera quadriceps])

HSP 1 Score: 181.415 bits (459), Expect = 6.022e-51
Identity = 82/128 (64.06%), Postives = 102/128 (79.69%), Query Frame = 0 
Query:  218 KPKKFIRVGPGQTWEDPTLNEWPENDFRIFCGDLGPEVTDEHLTNAFRGKYPSFAKAKVLRDRGTGKSRGYGFVSFLDPLEGLKALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKSKKKFLSKL 345
            K KK IR+  GQTWEDP+L EW E+DFRIFCGDLG +VTDE L   F GKYPSF KAKV+RD+ T K++G+GFVSF DP + +KA++EMNG+YVGSRP+KLRK  WK+R+L+ VRKKEK K+  +  L
Sbjct:  196 KNKKIIRMAGGQTWEDPSLLEWDEDDFRIFCGDLGNDVTDEMLVRVF-GKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFIKAMKEMNGRYVGSRPIKLRKSSWKQRNLETVRKKEKEKQALIGLL 322
[Close]
BLAST of EWM22685.1 vs. NCBI_GenBank
Match: gi|1126589432|ref|XP_019697290.1| (PREDICTED: RNA-binding protein 42 isoform X1 [Harpegnathos saltator] >gi|307205597|gb|EFN83889.1| RNA-binding protein 42 [Harpegnathos saltator])

HSP 1 Score: 181.415 bits (459), Expect = 7.376e-51
Identity = 82/128 (64.06%), Postives = 102/128 (79.69%), Query Frame = 0 
Query:  218 KPKKFIRVGPGQTWEDPTLNEWPENDFRIFCGDLGPEVTDEHLTNAFRGKYPSFAKAKVLRDRGTGKSRGYGFVSFLDPLEGLKALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKSKKKFLSKL 345
            K KK IR+  GQTWEDP+L EW E+DFRIFCGDLG +VTDE L   F GKYPSF KAKV+RD+ T K++G+GFVSF DP + +KA++EMNG+YVGSRP+KLRK  WK+R+L+ VRKKEK K+  +  L
Sbjct:  196 KNKKIIRMAGGQTWEDPSLLEWDEDDFRIFCGDLGNDVTDEMLVRVF-GKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFIKAMKEMNGRYVGSRPIKLRKSSWKQRNLETVRKKEKEKQALIGLL 322
[Close]
BLAST of EWM22685.1 vs. NCBI_GenBank
Match: gi|817221216|ref|XP_012286123.1| (PREDICTED: RNA-binding protein 42-like [Orussus abietinus] >gi|817221219|ref|XP_012286124.1| PREDICTED: RNA-binding protein 42-like [Orussus abietinus])

HSP 1 Score: 180.644 bits (457), Expect = 1.632e-50
Identity = 83/128 (64.84%), Postives = 101/128 (78.91%), Query Frame = 0 
Query:  218 KPKKFIRVGPGQTWEDPTLNEWPENDFRIFCGDLGPEVTDEHLTNAFRGKYPSFAKAKVLRDRGTGKSRGYGFVSFLDPLEGLKALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKSKKKFLSKL 345
            K KK IR+  GQTWEDP+L EW E+DFRIFCGDLG +VTDE L   F GKYPSF KAKV+RD+ T K++G+GFVSF DP + +KA++EMNGKYVGSRP+KLRK  WK+R+L  VRKKEK K+  +  L
Sbjct:  199 KNKKIIRMAGGQTWEDPSLLEWDEDDFRIFCGDLGNDVTDEMLIRVF-GKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFIKAMKEMNGKYVGSRPIKLRKSSWKQRNLDTVRKKEKEKQALIGLL 325
[Close]
BLAST of EWM22685.1 vs. NCBI_GenBank
Match: gi|1069784978|ref|XP_018336214.1| (PREDICTED: RNA-binding protein 42 [Agrilus planipennis])

HSP 1 Score: 177.178 bits (448), Expect = 9.947e-50
Identity = 82/132 (62.12%), Postives = 99/132 (75.00%), Query Frame = 0 
Query:  217 GKPKKFIRVGPGQTWEDPTLNEWPENDFRIFCGDLGPEVTDEHLTNAFRGKYPSFAKAKVLRDRGTGKSRGYGFVSFLDPLEGLKALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKSKKKFLSKLGLG 348
            GK KK +R   GQ WEDPTL +W E+DFRIFCGDLG +VTDE LT  F  KYPSF KA+V+RD+ T KSRGYGFVSF DP +  KA++EMNG+YVGSRP+KLRK +WK R +  VRKKEK +   ++ L  G
Sbjct:  153 GKNKKLLRTAGGQVWEDPTLTDWSEDDFRIFCGDLGNDVTDELLTRTF-NKYPSFVKARVVRDKRTNKSRGYGFVSFKDPSDFTKAMKEMNGRYVGSRPIKLRKSNWKNRCVDTVRKKEKERAALINMLTAG 283
[Close]
BLAST of EWM22685.1 vs. NCBI_GenBank
Match: gi|645004604|ref|XP_008209983.1| (PREDICTED: RNA-binding protein 42 [Nasonia vitripennis] >gi|1032754181|ref|XP_016838144.1| PREDICTED: RNA-binding protein 42 [Nasonia vitripennis])

HSP 1 Score: 177.948 bits (450), Expect = 1.328e-49
Identity = 79/124 (63.71%), Postives = 98/124 (79.03%), Query Frame = 0 
Query:  222 FIRVGPGQTWEDPTLNEWPENDFRIFCGDLGPEVTDEHLTNAFRGKYPSFAKAKVLRDRGTGKSRGYGFVSFLDPLEGLKALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKSKKKFLSKL 345
             IR+  GQTWEDP+L EW E+DFRIFCGDLG +VTDE L   F GKYPSF KAKV+RD+ T K++G+GFVSF DP + +KA++EMNG+YVGSRP+KLRK  WK+R+L  VRKKEK K+  +  L
Sbjct:  200 IIRMAGGQTWEDPSLLEWDEDDFRIFCGDLGNDVTDEMLVRVF-GKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFIKAMKEMNGRYVGSRPIKLRKSSWKQRNLDTVRKKEKEKQNLIGLL 322
[Close]
BLAST of EWM22685.1 vs. NCBI_GenBank
Match: gi|972187654|ref|XP_015175402.1| (PREDICTED: RNA-binding protein 42 [Polistes dominula])

HSP 1 Score: 177.563 bits (449), Expect = 2.180e-49
Identity = 79/124 (63.71%), Postives = 99/124 (79.84%), Query Frame = 0 
Query:  222 FIRVGPGQTWEDPTLNEWPENDFRIFCGDLGPEVTDEHLTNAFRGKYPSFAKAKVLRDRGTGKSRGYGFVSFLDPLEGLKALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKSKKKFLSKL 345
             IR+  GQTWEDP+L EW E+DFRIFCGDLG +VTDE L   F GKYPSF KAKV+RD+ T K++G+GFVSF DP + +KA++EMNG+YVGSRP+KLRK  WK+R+L+ VRKKEK K+  +  L
Sbjct:  199 IIRMAGGQTWEDPSLLEWDEDDFRIFCGDLGNDVTDEMLVRVF-GKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFIKAMKEMNGRYVGSRPIKLRKSSWKQRNLETVRKKEKEKQALIGLL 321
[Close]
BLAST of EWM22685.1 vs. NCBI_GenBank
Match: gi|954572004|ref|XP_014610230.1| (PREDICTED: RNA-binding protein 42 [Polistes canadensis] >gi|954572006|ref|XP_014610231.1| PREDICTED: RNA-binding protein 42 [Polistes canadensis])

HSP 1 Score: 177.563 bits (449), Expect = 2.180e-49
Identity = 79/124 (63.71%), Postives = 99/124 (79.84%), Query Frame = 0 
Query:  222 FIRVGPGQTWEDPTLNEWPENDFRIFCGDLGPEVTDEHLTNAFRGKYPSFAKAKVLRDRGTGKSRGYGFVSFLDPLEGLKALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKSKKKFLSKL 345
             IR+  GQTWEDP+L EW E+DFRIFCGDLG +VTDE L   F GKYPSF KAKV+RD+ T K++G+GFVSF DP + +KA++EMNG+YVGSRP+KLRK  WK+R+L+ VRKKEK K+  +  L
Sbjct:  199 IIRMAGGQTWEDPSLLEWDEDDFRIFCGDLGNDVTDEMLVRVF-GKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFIKAMKEMNGRYVGSRPIKLRKSSWKQRNLETVRKKEKEKQALIGLL 321
[Close]
BLAST of EWM22685.1 vs. NCBI_GenBank
Match: gi|826423509|ref|XP_012526739.1| (PREDICTED: RNA-binding protein 42 [Monomorium pharaonis] >gi|826423513|ref|XP_012526740.1| PREDICTED: RNA-binding protein 42 [Monomorium pharaonis])

HSP 1 Score: 177.178 bits (448), Expect = 2.860e-49
Identity = 78/124 (62.90%), Postives = 98/124 (79.03%), Query Frame = 0 
Query:  222 FIRVGPGQTWEDPTLNEWPENDFRIFCGDLGPEVTDEHLTNAFRGKYPSFAKAKVLRDRGTGKSRGYGFVSFLDPLEGLKALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKSKKKFLSKL 345
             IR   GQTWEDP+L +W E+DFRIFCGDLG +VTDE L   F GKYPSF KAKV+RD+ T K++G+GFVSF DP + +KA++EMNG+YVGSRP+KLRK  WK+R+L+ VRKKEK K+  +  L
Sbjct:  200 IIRTAGGQTWEDPSLLDWDEDDFRIFCGDLGNDVTDEMLVRVF-GKYPSFQKAKVIRDKRTNKTKGFGFVSFKDPQDFIKAMKEMNGRYVGSRPIKLRKSSWKQRNLETVRKKEKEKQALIGML 322
[Close]
BLAST of EWM22685.1 vs. NCBI_GenBank
Match: gi|1068409439|ref|XP_018051302.1| (PREDICTED: RNA-binding protein 42 [Atta colombica] >gi|1070134556|ref|XP_018349655.1| PREDICTED: RNA-binding protein 42 [Trachymyrmex septentrionalis] >gi|1009355156|gb|KYM80482.1| RNA-binding protein 42 [Atta colombica] >gi|1009426490|gb|KYN44575.1| RNA-binding protein 42 [Trachymyrmex septentrionalis])

HSP 1 Score: 177.178 bits (448), Expect = 2.953e-49
Identity = 79/124 (63.71%), Postives = 98/124 (79.03%), Query Frame = 0 
Query:  222 FIRVGPGQTWEDPTLNEWPENDFRIFCGDLGPEVTDEHLTNAFRGKYPSFAKAKVLRDRGTGKSRGYGFVSFLDPLEGLKALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKSKKKFLSKL 345
             IR   GQTWEDP+L EW E+DFRIFCGDLG +VTDE L   F GKYPSF KAKV+RD+ T K++G+GFVSF DP + +KA++EMNG+YVGSRP+KLRK  WK+R+L+ VRKKEK K+  +  L
Sbjct:  200 IIRTAGGQTWEDPSLLEWDEDDFRIFCGDLGNDVTDEMLVRVF-GKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFIKAMKEMNGRYVGSRPIKLRKSSWKQRNLESVRKKEKEKQTLIGLL 322
The following BLAST results are available for this feature:
BLAST of EWM22685.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103251|gb|EWM22685.1|0.000e+0100.00rna-binding protein 42 [Nannochloropsis gaditana][more]
gi|951549387|ref|XP_014474677.1|6.022e-5164.06PREDICTED: RNA-binding protein 42 [Dinoponera quad... [more]
gi|1126589432|ref|XP_019697290.1|7.376e-5164.06PREDICTED: RNA-binding protein 42 isoform X1 [Harp... [more]
gi|817221216|ref|XP_012286123.1|1.632e-5064.84PREDICTED: RNA-binding protein 42-like [Orussus ab... [more]
gi|1069784978|ref|XP_018336214.1|9.947e-5062.12PREDICTED: RNA-binding protein 42 [Agrilus planipe... [more]
gi|645004604|ref|XP_008209983.1|1.328e-4963.71PREDICTED: RNA-binding protein 42 [Nasonia vitripe... [more]
gi|972187654|ref|XP_015175402.1|2.180e-4963.71PREDICTED: RNA-binding protein 42 [Polistes dominu... [more]
gi|954572004|ref|XP_014610230.1|2.180e-4963.71PREDICTED: RNA-binding protein 42 [Polistes canade... [more]
gi|826423509|ref|XP_012526739.1|2.860e-4962.90PREDICTED: RNA-binding protein 42 [Monomorium phar... [more]
gi|1068409439|ref|XP_018051302.1|2.953e-4963.71PREDICTED: RNA-binding protein 42 [Atta colombica]... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8010rna8010Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications