rna8006, rna8006 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8006
Unique Name	rna8006
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	921
Alignment location	KK037247.1:333866..335711 +

Link to JBrowse

Properties


Property Name	Value
Product	Riboflavin synthase-like beta-barrel
Orig transcript id	gnl\|cribi\|Naga_100218g3.5301.mrna
Orig protein id	gnl\|cribi\|Naga_100218g3.5301
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:333866..335711 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100218g3	gene7752	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8006	rna8006-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22689.1	cds7984	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:333866..335711+
coding sequence from alignment at KK037247.1:333866..335711+

mRNA sequence

>rna8006 ID=rna8006|Name=rna8006|organism=Nannochloropsis gaditana|type=mRNA|length=921bp
ATGCGCGCAGGTAGCCTTTTAAAGGCCGGTCTCTCGACTGTAGCCTTGGC
ACAAGCCTTCCGTCCTCTTTCCCCCCCCGCCAACAGGATACCGACCACCC
ACATTCTCCTGCCAGCCTCCTCCCCCGGCCCTTGCACGTCGCCCCCGTCA
GCGCCCGTCTTTACCCCGCCTCTATTTGCGGCCGCGAGCGACTCATCCGA
CTGGCCCAGCGACAGCAGCGACGACGATTACACCGACCGCGGGGACGCGT
CTTCCTCCGGACCTGACGTTGTCGACGCCACCGCTCGCGCCACCACCCGC
AAGGAGCTCCAGCACGATCTCCTCCTCCTCCTGGTTGGCCAGAATAAAGG
CTTCAGCGTCTCGGAATCGGAGCGGGAGGACATCGACGACACGCTGCGCG
ACCTGGAGGCCGTCAACCCCACGCCTCGGCCCACGGAGGCATTCTCTCAG
GGCACCTCCCCGCTCTCGGGGACCTGGCGCCTCGTCTACACCGACGCCTT
GGACGTCCTCGTGCTCGGCCTCGTGCCCCTGGCCGTGATCGGCAAGGTCT
TCCAGAACATCTCCCCAGACGGAAAAAGCATTGCCAACGTGGTGGAGGTG
AGCCAAGGGGCCAGCCAGCTCTCCTTCTTTCCTCTGCTGGGCAAGCTCGG
CGACAGCACGGCCCGCCTCCGCGTTGAAGCGACGTCCGAGATCCTGTCGC
CGACCCGCTTGTCCTTGACCTTCCAGAGCGCGGGTTTCGAGCCCGTGACG
CTATTCGGGATGGAGGTGGAGCAACAGCTGCGAGTGCCGAAGGTGGACTT
CTGGAGAAGCCCAAATGTGGGTTGGATCGAGACGACCTACGTGGACGAGA
AGATCCGCATCGGACGATCCCCTGGTACTTACTACCCAACCGGCGTGGAC
CACACTTTCACCTTCAAATGA

protein sequence of rna8006

>rna8006-protein ID=rna8006-protein|Name=rna8006|organism=Nannochloropsis gaditana|type=polypeptide|length=321bp
MRIFELPTLTLSSPTATSWRRRALHLPSHLPVFLLALILLGLFTTHAFRL
PSHVAGGTTSSINRAGSLLAPISSVASAGRRRGKALALFSGIVEQMGRVQ
KVEMDKDMVMWSGETGKGMELTITDAARVLADAYEGCSIAVNGVCLTVVT
YTGDTFTVGCAPETIRCTNLGGLGAGERVNLERSLPADGRNSGHMVQGHV
DETGEILERWQEGDSLWVKVRASPAILPYIVEKGYIAVDGTSLTVCQVDR
NEGWFTFMLIAYTQKHIIVPHKAVGDRVNLEVDVLAKYVEHSMGATIESL
RANIEALQERVAVLEGRGDQG

mRNA from alignment at KK037247.1:333866..335711+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8006 ID=rna8006|Name=rna8006|organism=Nannochloropsis gaditana|type=mRNA|length=1846bp|location=Sequence derived from alignment at KK037247.1:333866..335711+ (Nannochloropsis gaditana)
ATGCGAATCTTCGAGCTACCTACGCTGACTCTTAGCTCACCCACCGCAAC
GTCCTGGAGACGCCGAGCGTTGCACttgccttcccacctccccgtcttcc
tcctagccctcatcctccttggcctcttCACGACACACGCCTTTCGTTTG
CCTAGTCATGTAGCAGGGGGCACCACATCCTCTATCAATAGAGCTGggag
cctcctcgcccccatCTCCTCAGTCGCCTCGGCCGGGCGACGGCGTGgga
aggccctggccctgttTTCCGGTATTGTAGAACAAATGGGTCGAGTGCAA
AAGGTGGAGATGGACAAGGACATGGTGATGTGGAGCGGAGAAACAGGAAA
GGGTACGTTgaatcgagggagggagggagggagggagggagggagggagt
gctcTGTAAGGCAGGCTTTCAAAGATCGGGACCCCAGAGACAAAAGAGTA
GTGACGCTTTACACGCCATATCAAAGGACTCGGTGTGTCGGTAGTCAGTT
GCTTTAAGCGCACATACTTTTACATTAAACTTTCTGTACTGCTCTCGCAG
GCATGGAACTGACAATCACGGACGCTGCCAGGGTGCTGGCGGATGCCTAT
GAGGGCTGCAGCATCGCCGTGAACGGGGTTTGTCTCACAGTCGTCACCTA
CACAGGTAAATGCGCCGAGGGAGATTCCCCTCAGCACAAGAGATGACCCT
AGTCCCTGTTGACCCTACAGGCATGCATGaaccctctttttccctcagCT
CTTTCCATCGGTCGGGCTCTCGGCAGGGTCCCCGTTATGCAGGAGCCACC
ACTCTCACGCCCACTGCCTCTTTTTTGGAACCACACAGGGGACACATTCA
CAGTAGGGTGCGCGCCTGAGACCATCCGCTGCACCAACCTGGGCGGACTG
GGGGCGGGCGAACGTGTTAATCTTGAAAGGCGAGTGTGGTGGGCATTTGA
GACTTTGCGGTGCCTGTGTGGATCCCTCCAGGTCCCCCAGGCGCCTCCTG
CCTACGTTTTTTGCGATAGCACCGTGTCTACATGTCCAAATGTGTGTGGA
TGGGCGCCTTTGcacttcccattcctccttcgcgcggctccatcgccttc
tgTGTAAGGTCGGCGGGGGCAGAGCGTGACCCTCACGACacgagtccctc
cctcgcctgaCCGCACAGGAGCCTGCCGGCCGACGGGCGAAACTCGGGGC
ACATGGTGCAGGGCCACGTGGACGAGACGGGCGAGATCCTGGAGCGCTGG
CAGGAGGGTGATTCCCTCTGGGTGAAGGTGCGGGCCTCCCCAGCGATCCT
GCCCTACATTGTGGAGAAagggtgagaaggggggagacaagGATGCTATG
TCTCGatgagaaggcagggagcaCTCTTGTAGATGCACTTATGCCTGACT
TTGCGCGTCCGGTCGGACAGGTACATCGCCGTGGACGGGACGAGCCTCAC
AGTGTGCCAGGTGGATCGGAACGAGGGCTGGTTCACGTTCATGCTCATCG
CCTACACGCAGAAACACATCATCGTCCCGCACAAGGCTGTGGGTGACAGG
TCAGGACGACTTATTCTCTTTTTGCGATTCGTAATTTCATATTCTCGTGC
TGCGGGAACGATATGTTCGTATCTGCATGTTGAATTAATTTTGCCTCAAG
CAATCCAATGACGCGACATGGTTGACCAATTTACCTTTCAAACTATGTGC
ATGCAAACAGGGTTAATCTGGAGGTAGACGTGCTCGCCAAGTACGTAGAG
CATTCTATGGGCGCGACCATCGAGTCTCTGCGCGCTAACATCGAAGCATT
GCAAGAAAGAGTGGCAGTattggaagggagaggagaccaGGGGTGA

Coding sequence (CDS) from alignment at KK037247.1:333866..335711+

>rna8006 ID=rna8006|Name=rna8006|organism=Nannochloropsis gaditana|type=CDS|length=5796bp|location=Sequence derived from alignment at KK037247.1:333866..335711+ (Nannochloropsis gaditana)
ATGCGAATCTTCGAGCTACCTACGCTGACTCTTAGCTCACCCACCGCAAC
GTCCTGGAGACGCCGAGCGTTGCACttgccttcccacctccccgtcttcc
tcctagccctcatcctccttggcctcttCACGACACACGCCTTTCGTTTG
CCTAGTCATGTAGCAGGGGGCACCACATCCTCTATCAATAGAGCTGggag
cctcctcgcccccatCTCCTCAGTCGCCTCGGCCGGGCGACGGCGTGgga
aggccctggccctgttTTCCGGTATTGTAGAACAAATGGGTCGAGTGCAA
AAGGTGGAGATGGACAAGGACATGGTGATGTGGAGCGGAGAAACAGGAAA
GGGCATGGAACTGACAATCACGGACGCTGCCAGGGTGCTGGCGGATGCCT
ATGAGGGCTGCAGCATCGCCGTGAACGGGGTTTGTCTCACAGTCGTCACC
TACACAGGGGACACATTCACAGTAGGGTGCGCGCCTGAGACCATCCGCTG
CACCAACCTGGGCGGACTGGGGGCGGGCGAACGTGTTAATCTTGAAAGGA
GCCTGCCGGCCGACGGGCGAAACTCGGGGCACATGGTGCAGGGCCACGTG
GACGAGACGGGCGAGATCCTGGAGCGCTGGCAGGAGGGTGATTCCCTCTG
GGTGAAGGTGCGGGCCTCCCCAGCGATCCTGCCCTACATTGTGGAGAAag
gGTACATCGCCGTGGACGGGACGAGCCTCACAGTGTGCCAGGTGGATCGG
AACGAGGGCTGGTTCACGTTCATGCTCATCGCCTACACGCAGAAACACAT
CATCGTCCCGCACAAGGCTGTGGGTGACAGGGTTAATCTGGAGGTAGACG
TGCTCGCCAAGTACGTAGAGCATTCTATGGGCGCGACCATCGAGTCTCTG
CGCGCTAACATCGAAGCATTGCAAGAAAGAGTGGCAGTattggaagggag
aggagaccaGGGGTGAATGCGAATCTTCGAGCTACCTACGCTGACTCTTA
GCTCACCCACCGCAACGTCCTGGAGACGCCGAGCGTTGCACttgccttcc
cacctccccgtcttcctcctagccctcatcctccttggcctcttCACGAC
ACACGCCTTTCGTTTGCCTAGTCATGTAGCAGGGGGCACCACATCCTCTA
TCAATAGAGCTGggagcctcctcgcccccatCTCCTCAGTCGCCTCGGCC
GGGCGACGGCGTGggaaggccctggccctgttTTCCGGTATTGTAGAACA
AATGGGTCGAGTGCAAAAGGTGGAGATGGACAAGGACATGGTGATGTGGA
GCGGAGAAACAGGAAAGGGCATGGAACTGACAATCACGGACGCTGCCAGG
GTGCTGGCGGATGCCTATGAGGGCTGCAGCATCGCCGTGAACGGGGTTTG
TCTCACAGTCGTCACCTACACAGGGGACACATTCACAGTAGGGTGCGCGC
CTGAGACCATCCGCTGCACCAACCTGGGCGGACTGGGGGCGGGCGAACGT
GTTAATCTTGAAAGGAGCCTGCCGGCCGACGGGCGAAACTCGGGGCACAT
GGTGCAGGGCCACGTGGACGAGACGGGCGAGATCCTGGAGCGCTGGCAGG
AGGGTGATTCCCTCTGGGTGAAGGTGCGGGCCTCCCCAGCGATCCTGCCC
TACATTGTGGAGAAaggGTACATCGCCGTGGACGGGACGAGCCTCACAGT
GTGCCAGGTGGATCGGAACGAGGGCTGGTTCACGTTCATGCTCATCGCCT
ACACGCAGAAACACATCATCGTCCCGCACAAGGCTGTGGGTGACAGGGTT
AATCTGGAGGTAGACGTGCTCGCCAAGTACGTAGAGCATTCTATGGGCGC
GACCATCGAGTCTCTGCGCGCTAACATCGAAGCATTGCAAGAAAGAGTGG
CAGTattggaagggagaggagaccaGGGGTGAATGCGAATCTTCGAGCTA
CCTACGCTGACTCTTAGCTCACCCACCGCAACGTCCTGGAGACGCCGAGC
GTTGCACttgccttcccacctccccgtcttcctcctagccctcatcctcc
ttggcctcttCACGACACACGCCTTTCGTTTGCCTAGTCATGTAGCAGGG
GGCACCACATCCTCTATCAATAGAGCTGggagcctcctcgcccccatCTC
CTCAGTCGCCTCGGCCGGGCGACGGCGTGggaaggccctggccctgttTT
CCGGTATTGTAGAACAAATGGGTCGAGTGCAAAAGGTGGAGATGGACAAG
GACATGGTGATGTGGAGCGGAGAAACAGGAAAGGGCATGGAACTGACAAT
CACGGACGCTGCCAGGGTGCTGGCGGATGCCTATGAGGGCTGCAGCATCG
CCGTGAACGGGGTTTGTCTCACAGTCGTCACCTACACAGGGGACACATTC
ACAGTAGGGTGCGCGCCTGAGACCATCCGCTGCACCAACCTGGGCGGACT
GGGGGCGGGCGAACGTGTTAATCTTGAAAGGAGCCTGCCGGCCGACGGGC
GAAACTCGGGGCACATGGTGCAGGGCCACGTGGACGAGACGGGCGAGATC
CTGGAGCGCTGGCAGGAGGGTGATTCCCTCTGGGTGAAGGTGCGGGCCTC
CCCAGCGATCCTGCCCTACATTGTGGAGAAaggGTACATCGCCGTGGACG
GGACGAGCCTCACAGTGTGCCAGGTGGATCGGAACGAGGGCTGGTTCACG
TTCATGCTCATCGCCTACACGCAGAAACACATCATCGTCCCGCACAAGGC
TGTGGGTGACAGGGTTAATCTGGAGGTAGACGTGCTCGCCAAGTACGTAG
AGCATTCTATGGGCGCGACCATCGAGTCTCTGCGCGCTAACATCGAAGCA
TTGCAAGAAAGAGTGGCAGTattggaagggagaggagaccaGGGGTGAAT
GCGAATCTTCGAGCTACCTACGCTGACTCTTAGCTCACCCACCGCAACGT
CCTGGAGACGCCGAGCGTTGCACttgccttcccacctccccgtcttcctc
ctagccctcatcctccttggcctcttCACGACACACGCCTTTCGTTTGCC
TAGTCATGTAGCAGGGGGCACCACATCCTCTATCAATAGAGCTGggagcc
tcctcgcccccatCTCCTCAGTCGCCTCGGCCGGGCGACGGCGTGggaag
gccctggccctgttTTCCGGTATTGTAGAACAAATGGGTCGAGTGCAAAA
GGTGGAGATGGACAAGGACATGGTGATGTGGAGCGGAGAAACAGGAAAGG
GCATGGAACTGACAATCACGGACGCTGCCAGGGTGCTGGCGGATGCCTAT
GAGGGCTGCAGCATCGCCGTGAACGGGGTTTGTCTCACAGTCGTCACCTA
CACAGGGGACACATTCACAGTAGGGTGCGCGCCTGAGACCATCCGCTGCA
CCAACCTGGGCGGACTGGGGGCGGGCGAACGTGTTAATCTTGAAAGGAGC
CTGCCGGCCGACGGGCGAAACTCGGGGCACATGGTGCAGGGCCACGTGGA
CGAGACGGGCGAGATCCTGGAGCGCTGGCAGGAGGGTGATTCCCTCTGGG
TGAAGGTGCGGGCCTCCCCAGCGATCCTGCCCTACATTGTGGAGAAaggG
TACATCGCCGTGGACGGGACGAGCCTCACAGTGTGCCAGGTGGATCGGAA
CGAGGGCTGGTTCACGTTCATGCTCATCGCCTACACGCAGAAACACATCA
TCGTCCCGCACAAGGCTGTGGGTGACAGGGTTAATCTGGAGGTAGACGTG
CTCGCCAAGTACGTAGAGCATTCTATGGGCGCGACCATCGAGTCTCTGCG
CGCTAACATCGAAGCATTGCAAGAAAGAGTGGCAGTattggaagggagag
gagaccaGGGGTGAATGCGAATCTTCGAGCTACCTACGCTGACTCTTAGC
TCACCCACCGCAACGTCCTGGAGACGCCGAGCGTTGCACttgccttccca
cctccccgtcttcctcctagccctcatcctccttggcctcttCACGACAC
ACGCCTTTCGTTTGCCTAGTCATGTAGCAGGGGGCACCACATCCTCTATC
AATAGAGCTGggagcctcctcgcccccatCTCCTCAGTCGCCTCGGCCGG
GCGACGGCGTGggaaggccctggccctgttTTCCGGTATTGTAGAACAAA
TGGGTCGAGTGCAAAAGGTGGAGATGGACAAGGACATGGTGATGTGGAGC
GGAGAAACAGGAAAGGGCATGGAACTGACAATCACGGACGCTGCCAGGGT
GCTGGCGGATGCCTATGAGGGCTGCAGCATCGCCGTGAACGGGGTTTGTC
TCACAGTCGTCACCTACACAGGGGACACATTCACAGTAGGGTGCGCGCCT
GAGACCATCCGCTGCACCAACCTGGGCGGACTGGGGGCGGGCGAACGTGT
TAATCTTGAAAGGAGCCTGCCGGCCGACGGGCGAAACTCGGGGCACATGG
TGCAGGGCCACGTGGACGAGACGGGCGAGATCCTGGAGCGCTGGCAGGAG
GGTGATTCCCTCTGGGTGAAGGTGCGGGCCTCCCCAGCGATCCTGCCCTA
CATTGTGGAGAAaggGTACATCGCCGTGGACGGGACGAGCCTCACAGTGT
GCCAGGTGGATCGGAACGAGGGCTGGTTCACGTTCATGCTCATCGCCTAC
ACGCAGAAACACATCATCGTCCCGCACAAGGCTGTGGGTGACAGGGTTAA
TCTGGAGGTAGACGTGCTCGCCAAGTACGTAGAGCATTCTATGGGCGCGA
CCATCGAGTCTCTGCGCGCTAACATCGAAGCATTGCAAGAAAGAGTGGCA
GTattggaagggagaggagaccaGGGGTGAATGCGAATCTTCGAGCTACC
TACGCTGACTCTTAGCTCACCCACCGCAACGTCCTGGAGACGCCGAGCGT
TGCACttgccttcccacctccccgtcttcctcctagccctcatcctcctt
ggcctcttCACGACACACGCCTTTCGTTTGCCTAGTCATGTAGCAGGGGG
CACCACATCCTCTATCAATAGAGCTGggagcctcctcgcccccatCTCCT
CAGTCGCCTCGGCCGGGCGACGGCGTGggaaggccctggccctgttTTCC
GGTATTGTAGAACAAATGGGTCGAGTGCAAAAGGTGGAGATGGACAAGGA
CATGGTGATGTGGAGCGGAGAAACAGGAAAGGGCATGGAACTGACAATCA
CGGACGCTGCCAGGGTGCTGGCGGATGCCTATGAGGGCTGCAGCATCGCC
GTGAACGGGGTTTGTCTCACAGTCGTCACCTACACAGGGGACACATTCAC
AGTAGGGTGCGCGCCTGAGACCATCCGCTGCACCAACCTGGGCGGACTGG
GGGCGGGCGAACGTGTTAATCTTGAAAGGAGCCTGCCGGCCGACGGGCGA
AACTCGGGGCACATGGTGCAGGGCCACGTGGACGAGACGGGCGAGATCCT
GGAGCGCTGGCAGGAGGGTGATTCCCTCTGGGTGAAGGTGCGGGCCTCCC
CAGCGATCCTGCCCTACATTGTGGAGAAaggGTACATCGCCGTGGACGGG
ACGAGCCTCACAGTGTGCCAGGTGGATCGGAACGAGGGCTGGTTCACGTT
CATGCTCATCGCCTACACGCAGAAACACATCATCGTCCCGCACAAGGCTG
TGGGTGACAGGGTTAATCTGGAGGTAGACGTGCTCGCCAAGTACGTAGAG
CATTCTATGGGCGCGACCATCGAGTCTCTGCGCGCTAACATCGAAGCATT
GCAAGAAAGAGTGGCAGTattggaagggagaggagaccaGGGGTGA

Synonyms

Publications