EWM22689.1, cds7984 (CDS) Nannochloropsis gaditana

Overview
NameEWM22689.1
Unique Namecds7984
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:333866..334217 +
Alignment locationKK037247.1:334416..334520 +
Alignment locationKK037247.1:334704..334794 +
Alignment locationKK037247.1:335034..335186 +
Alignment locationKK037247.1:335286..335414 +
Alignment locationKK037247.1:335576..335711 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22689.1
ProductRiboflavin synthase-like beta-barrel
Orig transcript idgnl|cribi|Naga_100218g3.5301.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:333866..334217 +
KK037247.1supercontigKK037247.1:334416..334520 +
KK037247.1supercontigKK037247.1:334704..334794 +
KK037247.1supercontigKK037247.1:335034..335186 +
KK037247.1supercontigKK037247.1:335286..335414 +
KK037247.1supercontigKK037247.1:335576..335711 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0055114oxidation-reduction process
GO:0009231riboflavin biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0016491oxidoreductase activity
GO:0004746riboflavin synthase activity
Vocabulary: INTERPRO
TermDefinition
IPR017938Riboflavin_synthase-like_b-brl
IPR001783Lumazine-bd
IPR026017Lumazine-bd_dom
IPR023366ATPase_asu-like
Homology
BLAST of EWM22689.1 vs. NCBI_GenBank
Match: gi|585103255|gb|EWM22689.1| (Riboflavin synthase-like beta-barrel [Nannochloropsis gaditana])

HSP 1 Score: 657.136 bits (1694), Expect = 0.000e+0
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0
Query:    1 MRIFELPTLTLSSPTATSWRRRALHLPSHLPVFLLALILLGLFTTHAFRLPSHVAGGTTSSINRAGSLLAPISSVASAGRRRGKALALFSGIVEQMGRVQKVEMDKDMVMWSGETGKGMELTITDAARVLADAYEGCSIAVNGVCLTVVTYTGDTFTVGCAPETIRCTNLGGLGAGERVNLERSLPADGRNSGHMVQGHVDETGEILERWQEGDSLWVKVRASPAILPYIVEKGYIAVDGTSLTVCQVDRNEGWFTFMLIAYTQKHIIVPHKAVGDRVNLEVDVLAKYVEHSMGATIESLRANIEALQERVAVLEGRGDQG 321
            MRIFELPTLTLSSPTATSWRRRALHLPSHLPVFLLALILLGLFTTHAFRLPSHVAGGTTSSINRAGSLLAPISSVASAGRRRGKALALFSGIVEQMGRVQKVEMDKDMVMWSGETGKGMELTITDAARVLADAYEGCSIAVNGVCLTVVTYTGDTFTVGCAPETIRCTNLGGLGAGERVNLERSLPADGRNSGHMVQGHVDETGEILERWQEGDSLWVKVRASPAILPYIVEKGYIAVDGTSLTVCQVDRNEGWFTFMLIAYTQKHIIVPHKAVGDRVNLEVDVLAKYVEHSMGATIESLRANIEALQERVAVLEGRGDQG
Sbjct:    1 MRIFELPTLTLSSPTATSWRRRALHLPSHLPVFLLALILLGLFTTHAFRLPSHVAGGTTSSINRAGSLLAPISSVASAGRRRGKALALFSGIVEQMGRVQKVEMDKDMVMWSGETGKGMELTITDAARVLADAYEGCSIAVNGVCLTVVTYTGDTFTVGCAPETIRCTNLGGLGAGERVNLERSLPADGRNSGHMVQGHVDETGEILERWQEGDSLWVKVRASPAILPYIVEKGYIAVDGTSLTVCQVDRNEGWFTFMLIAYTQKHIIVPHKAVGDRVNLEVDVLAKYVEHSMGATIESLRANIEALQERVAVLEGRGDQG 321          
BLAST of EWM22689.1 vs. NCBI_GenBank
Match: gi|219124103|ref|XP_002182351.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406312|gb|EEC46252.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 258.07 bits (658), Expect = 2.317e-82
Identity = 129/227 (56.83%), Postives = 163/227 (71.81%), Query Frame = 0
Query:   88 LFSGIVEQMGRVQKVEMDKDMVMWSGETGKGMELTITDAARVLADAYEGCSIAVNGVCLTV--VTYTGDTFTVGCAPETIRCTNLGGLGAGERVNLERSLPADGRNSGHMVQGHVDETGEILERWQEGDSLWVKVRASPAILPYIVEKGYIAVDGTSLTVCQVDRNEGWFTFMLIAYTQKHIIVPHKAVGDRVNLEVDVLAKYVEHSMGATI---ESLRANIEALQE 309
            +F+GIVE+MG V  +    DM +W G  G G ELT+  A+ ++  AY GCSI V+GVCLT   + Y    F VG APETIR T LG L  G+ VNLER+    GRNSGH VQGHVD+TGEI++RW + DSL+ K++ +P +L YIV KG+IA+DGTSLTVC+VD  E WFTFML+ YTQK IIVP K VGDRVNLEVDVL KY E+++ A I   E+L A +E+L++
Sbjct:    1 MFTGIVEEMGEVVSLTQRDDMPLWDGTKGSGTELTVK-ASIMMEGAYLGCSICVSGVCLTATELDYDESIFRVGLAPETIRRTYLGDLKTGDAVNLERASEIGGRNSGHFVQGHVDDTGEIIDRWTDEDSLFFKIKVTPDVLAYIVPKGFIAIDGTSLTVCEVDYQEKWFTFMLVEYTQKKIIVPAKKVGDRVNLEVDVLGKYSENALAALIPRLEALEAKVESLEK 226          
BLAST of EWM22689.1 vs. NCBI_GenBank
Match: gi|551642768|ref|XP_005824180.1| (hypothetical protein GUITHDRAFT_158612 [Guillardia theta CCMP2712] >gi|428168253|gb|EKX37200.1| hypothetical protein GUITHDRAFT_158612 [Guillardia theta CCMP2712])

HSP 1 Score: 256.529 bits (654), Expect = 9.021e-82
Identity = 126/214 (58.88%), Postives = 160/214 (74.77%), Query Frame = 0
Query:   88 LFSGIVEQMGRVQKVEMD-KDMVMWSGETGKGMELTITDAARVLADAYEGCSIAVNGVCLTVVTYTGDTFTVGCAPETIRCTNLGGLGAGERVNLERSLPADGRNSGHMVQGHVDETGEILERWQEGDSLWVKVRASPAILPYIVEKGYIAVDGTSLTVCQVDRNEGWFTFMLIAYTQKHIIVPHKAVGDRVNLEVDVLAKYVEHSMGATIESL 300
            +F+GIVE+MG +++V+   K    W G  G GM L +    +VL   YEGCSIAVNGVCLTV  +  ++FTVG APETIR TNLG LG G  VNLER+   DGRNSGHMVQGHVD  GEI+E+WQ+ +SL++KV+A   ++ YIV KG+IA+DGTSLTVC+ D   GWFTFMLI YTQ+H+I+P K +GD+VNLEVDV++KYVE S+G   + L
Sbjct:    1 MFTGIVEEMGAIKEVKNGFKGWGEWEGSDG-GMTLRV-GGGKVLEGCYEGCSIAVNGVCLTVTEFDSESFTVGVAPETIRKTNLGLLGQGSPVNLERAAAMDGRNSGHMVQGHVDNVGEIIEKWQDKESLFIKVKAPRELMQYIVPKGFIAIDGTSLTVCETDVANGWFTFMLIDYTQQHVIIPKKPIGDKVNLEVDVISKYVERSLGNINDRL 212          
BLAST of EWM22689.1 vs. NCBI_GenBank
Match: gi|922861756|gb|KOO29469.1| (hypothetical protein Ctob_008069 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 254.603 bits (649), Expect = 3.211e-81
Identity = 129/225 (57.33%), Postives = 162/225 (72.00%), Query Frame = 0
Query:   88 LFSGIVEQMGRVQKVEMDKDMVMWSGETGKGMELTITDAARVLADAYEGCSIAVNGVCLTVVTYTGDTFTVGCAPETIRCTNLGGLGAGERVNLERSLPADGRNSGHMVQGHVDETGEILERWQEGDSLWVKVRASPAILPYIVEKGYIAVDGTSLTVCQVDRNEGWFTFMLIAYTQKHIIVPHKAVGDRVNLEVDVLAKYVEHSMGATIESLRANIEALQERVA 312
            +FSGIVE+MG+V K++    +  W G  G+G EL + +A   L  A  GCSIAVNGVCLTV  +    F VG APETIR TNL  L  G+ VN+ER+LPADGRNSGH VQGHVD+ G I E   +GDSLWV+VR    ++PYIV KG+IA+DGTSLTVC V+  EGWF FMLIA+TQ+ +++P KAVGD VNLEVDVLAKYVE  + A    + A ++AL+ ++A
Sbjct:    1 MFSGIVEEMGKVSKLDKVPRLKQWDGTVGEGWELEV-EATVALEGASLGCSIAVNGVCLTVTEFDKHKFKVGLAPETIRRTNLERLVPGDPVNVERALPADGRNSGHFVQGHVDDIGIIEELRPDGDSLWVRVRPPARLMPYIVPKGFIAIDGTSLTVCNVNAAEGWFDFMLIAFTQQKVVIPKKAVGDAVNLEVDVLAKYVEQGLKA----VTARLDALEAKLA 220          
BLAST of EWM22689.1 vs. NCBI_GenBank
Match: gi|675188121|ref|XP_008902945.1| (riboflavin synthase, alpha subunit [Phytophthora parasitica INRA-310] >gi|568097281|gb|ETN12025.1| riboflavin synthase, alpha subunit [Phytophthora parasitica INRA-310])

HSP 1 Score: 254.218 bits (648), Expect = 1.171e-80
Identity = 124/215 (57.67%), Postives = 152/215 (70.70%), Query Frame = 0
Query:   88 LFSGIVEQMGRVQKVEMDKDMVMWSGETGKGMELTITDAARVLADAYEGCSIAVNGVCLTVVTYTGDTFTVGCAPETIRCTNLGGLGAGERVNLERSLPADGRNSGHMVQGHVDETGEILERWQEGDSLWVKVRASPAILPYIVEKGYIAVDGTSLTVCQVDRNEGWFTFMLIAYTQKHIIVPHKAVGDRVNLEVDVLAKYVEHSMGATIESLRA 302
            +F+GI+E++G V  ++   D+++W+GE G G EL +      L  AY GCSIAVNG CLT  +   D    G APET+R TNLG L AG++VN+ERS+  D RNSGH VQGHVD TG IL   +E DSLWVK+ A+P IL  IV KGYIA+DGTSLTVC+VDR  GWF+ MLI+YTQ HII+P K VGDRVNLE DVL KY   SMG  +E + A
Sbjct:    1 MFTGIIEEIGTVVSMQERNDLLLWNGERGTGFELVVR-VKVALEGAYLGCSIAVNGTCLTATSIDEDRVAFGVAPETLRRTNLGELKAGDKVNVERSMGVDARNSGHFVQGHVDGTGSILSFTREDDSLWVKISATPEILRDIVTKGYIAIDGTSLTVCEVDRTNGWFSIMLISYTQNHIILPLKKVGDRVNLEPDVLGKYAARSMGGVLERVDA 214          
BLAST of EWM22689.1 vs. NCBI_GenBank
Match: gi|299116348|emb|CBN76150.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 254.988 bits (650), Expect = 2.087e-80
Identity = 127/226 (56.19%), Postives = 160/226 (70.80%), Query Frame = 0
Query:   77 SAGRRRGKALALFSGIVEQMGRVQKVEMDKDMVMWSGETGKGMELTITDAARVLADAYEGCSIAVNGVCLTVVTYTGDTFTVGCAPETIRCTNLGGLGAGERVNLERSLPADGRNSGHMVQGHVDETGEILERWQEGDSLWVKVRASPAILPYIVEKGYIAVDGTSLTVCQVDRNEGWFTFMLIAYTQKHIIVPHKAVGDRVNLEVDVLAKYVEHSMGATIESLRA 302
            +A  RR    A+FSGIVE+MG V  +  +  + +W G  G G+ELT+  A  VL  A EGCSIAVNGVCLTV ++  D F VG APET+R +NL  L AG+ VNLER+LP DGRNSGH VQGHVD  G IL    + DSL VKV     ++ YI  KG+IAVDGTSLTVC+V+  E WFTFML+AYTQ+H+++P K+ GD+VNLEVDVL KY+E S+ + ++ L A
Sbjct:   55 TAAGRREVVRAMFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELTVK-ANTVLEGATEGCSIAVNGVCLTVTSFNDDEFKVGLAPETLRRSNLEDLRAGDGVNLERALPVDGRNSGHFVQGHVDNVGTILSMEADEDSLVVKVEVPQDLIRYIAPKGFIAVDGTSLTVCEVNNQECWFTFMLVAYTQQHVVIPKKSKGDKVNLEVDVLGKYIERSLSSVLDRLGA 279          
BLAST of EWM22689.1 vs. NCBI_GenBank
Match: gi|567965497|gb|ETK90967.1| (riboflavin synthase, alpha subunit [Phytophthora parasitica] >gi|970622796|gb|KUF70772.1| Riboflavin synthase [Phytophthora nicotianae] >gi|970646107|gb|KUF86379.1| hypothetical protein AM588_10002241 [Phytophthora nicotianae])

HSP 1 Score: 251.906 bits (642), Expect = 7.693e-80
Identity = 123/215 (57.21%), Postives = 152/215 (70.70%), Query Frame = 0
Query:   88 LFSGIVEQMGRVQKVEMDKDMVMWSGETGKGMELTITDAARVLADAYEGCSIAVNGVCLTVVTYTGDTFTVGCAPETIRCTNLGGLGAGERVNLERSLPADGRNSGHMVQGHVDETGEILERWQEGDSLWVKVRASPAILPYIVEKGYIAVDGTSLTVCQVDRNEGWFTFMLIAYTQKHIIVPHKAVGDRVNLEVDVLAKYVEHSMGATIESLRA 302
            +F+GI+E++G V  ++   D+++W+GE G G EL +      L  AY GCSIAVNG CLT  +   D    G APET+R TNLG L AG++VN+ERS+  D RNSGH VQGHVD TG IL   +E DSLWVK+ A+P IL  IV KGYIA+DGTSLTVC+VDR  GWF+ MLI++TQ HII+P K VGDRVNLE DVL KY   SMG  +E + A
Sbjct:    1 MFTGIIEEIGTVVSMQERNDLLLWNGERGTGFELVVR-VKVALEGAYLGCSIAVNGTCLTATSIDEDRVAFGVAPETLRRTNLGELKAGDKVNVERSMGVDARNSGHFVQGHVDGTGSILSFTREDDSLWVKISATPEILRDIVTKGYIAIDGTSLTVCEVDRTNGWFSIMLISHTQNHIILPLKKVGDRVNLEPDVLGKYAARSMGGVLERVDA 214          
BLAST of EWM22689.1 vs. NCBI_GenBank
Match: gi|1210530960|dbj|GAX10500.1| (riboflavin synthase [Fistulifera solaris])

HSP 1 Score: 250.751 bits (639), Expect = 1.379e-79
Identity = 129/228 (56.58%), Postives = 158/228 (69.30%), Query Frame = 0
Query:   88 LFSGIVEQMGRVQKVEMDKDMVMWSGETGKGMELTITDAARVLADAYEGCSIAVNGVCLTVVTYTGDTFTVGCAPETIRCTNLGGLGAGERVNLERSLPADGRNSGHMVQGHVDETGEILERWQEGDSLWVKVRASPAILPYIVEKGYIAVDGTSLTVCQVDRNEGWFTFMLIAYTQKHIIVPHKAVGDRVNLEVDVLAKYVEHSMGA---TIESLRANIEALQERVA 312
            +F+GIVE+MG V  +E   DM +W G  GKG ELT+  A   L  AY GCSI V+GVCLT      DTF VG APET+  T    L  GE VNLER+    GRNSGH VQGHVD TGEI+E+  + DSLW+KVR SP I+ YIV KG++A+DGTSLTV  VDR+E WFTFMLI YTQK IIVP K VG  VN+E DVL KY E+++ A    +E+L A I +L++++A
Sbjct:    1 MFTGIVEEMGTVVSLEERDDMTLWDGTLGKGTELTVK-ADVALQGAYLGCSICVSGVCLTATALADDTFKVGLAPETLSKTYFKLLKPGELVNLERASVIGGRNSGHNVQGHVDGTGEIIEKRTDKDSLWIKVRTSPEIIRYIVPKGFVAIDGTSLTVVDVDRDENWFTFMLIEYTQKKIIVPGKPVGSLVNIEADVLGKYSENAVAAFLPRLEALEAKIASLEQKLA 227          
BLAST of EWM22689.1 vs. NCBI_GenBank
Match: gi|567994208|gb|ETL44369.1| (riboflavin synthase, alpha subunit [Phytophthora parasitica] >gi|568023482|gb|ETL97539.1| riboflavin synthase, alpha subunit [Phytophthora parasitica] >gi|568053888|gb|ETM50698.1| riboflavin synthase, alpha subunit [Phytophthora parasitica] >gi|570331881|gb|ETO79829.1| riboflavin synthase, alpha subunit [Phytophthora parasitica P1976] >gi|570955783|gb|ETP20872.1| riboflavin synthase, alpha subunit [Phytophthora parasitica CJ01A1])

HSP 1 Score: 251.136 bits (640), Expect = 1.721e-79
Identity = 123/215 (57.21%), Postives = 152/215 (70.70%), Query Frame = 0
Query:   88 LFSGIVEQMGRVQKVEMDKDMVMWSGETGKGMELTITDAARVLADAYEGCSIAVNGVCLTVVTYTGDTFTVGCAPETIRCTNLGGLGAGERVNLERSLPADGRNSGHMVQGHVDETGEILERWQEGDSLWVKVRASPAILPYIVEKGYIAVDGTSLTVCQVDRNEGWFTFMLIAYTQKHIIVPHKAVGDRVNLEVDVLAKYVEHSMGATIESLRA 302
            +F+GI+E++G V  ++   D+++W+GE G G EL +      L  AY GCSIAVNG CLT  +   D    G APET+R TNLG L AG++VN+ERS+  D RNSGH VQGHVD TG IL   +E DSLWVK+ A+P IL  IV KGYIA+DGTSLTVC+VDR  GWF+ MLI++TQ HII+P K VGDRVNLE DVL KY   SMG  +E + A
Sbjct:    1 MFTGIIEEIGTVVSMQERNDLLLWNGERGTGFELVVR-VKVALEGAYLGCSIAVNGTCLTATSIDEDRVAFGVAPETLRRTNLGELKAGDKVNVERSMGVDARNSGHFVQGHVDGTGSILSFTREDDSLWVKISATPEILRDIVTKGYIAIDGTSLTVCEVDRTNGWFSIMLISHTQNHIILPLKKVGDRVNLEPDVLGKYAARSMGGVLERVDA 214          
BLAST of EWM22689.1 vs. NCBI_GenBank
Match: gi|1210524498|dbj|GAX16756.1| (riboflavin synthase [Fistulifera solaris])

HSP 1 Score: 250.366 bits (638), Expect = 2.300e-79
Identity = 128/228 (56.14%), Postives = 158/228 (69.30%), Query Frame = 0
Query:   88 LFSGIVEQMGRVQKVEMDKDMVMWSGETGKGMELTITDAARVLADAYEGCSIAVNGVCLTVVTYTGDTFTVGCAPETIRCTNLGGLGAGERVNLERSLPADGRNSGHMVQGHVDETGEILERWQEGDSLWVKVRASPAILPYIVEKGYIAVDGTSLTVCQVDRNEGWFTFMLIAYTQKHIIVPHKAVGDRVNLEVDVLAKYVEHSMGA---TIESLRANIEALQERVA 312
            +F+GIVE+MG V  +E  +DM +W G  GKG ELT+  A   L  AY GCSI V+GVCLT      DTF VG APET+  T    L  GE VNLER+    GRNSGH VQGHVD TGEI+E+  + DSLW+KVR SP I+ YIV KG++A+DGTSLTV  V+R E WFTFMLI YTQK IIVP K VG  VN+E DVL KY E+++ A    +E+L A I +L++++A
Sbjct:    1 MFTGIVEEMGTVVSLEEREDMTLWDGTLGKGTELTV-KADVALQGAYLGCSICVSGVCLTATALADDTFKVGLAPETLSKTYFKSLKPGELVNLERASVIGGRNSGHNVQGHVDGTGEIIEKRTDKDSLWIKVRTSPEIIRYIVPKGFVAIDGTSLTVVDVNREENWFTFMLIEYTQKKIIVPGKPVGSLVNIEADVLGKYSENAVAAFLPRLEALEAKIASLEQKLA 227          
The following BLAST results are available for this feature:
BLAST of EWM22689.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103255|gb|EWM22689.1|0.000e+0100.00Riboflavin synthase-like beta-barrel [Nannochlorop... [more]
gi|219124103|ref|XP_002182351.1|2.317e-8256.83predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|551642768|ref|XP_005824180.1|9.021e-8258.88hypothetical protein GUITHDRAFT_158612 [Guillardia... [more]
gi|922861756|gb|KOO29469.1|3.211e-8157.33hypothetical protein Ctob_008069 [Chrysochromulina... [more]
gi|675188121|ref|XP_008902945.1|1.171e-8057.67riboflavin synthase, alpha subunit [Phytophthora p... [more]
gi|299116348|emb|CBN76150.1|2.087e-8056.19conserved unknown protein [Ectocarpus siliculosus][more]
gi|567965497|gb|ETK90967.1|7.693e-8057.21riboflavin synthase, alpha subunit [Phytophthora p... [more]
gi|1210530960|dbj|GAX10500.1|1.379e-7956.58riboflavin synthase [Fistulifera solaris][more]
gi|567994208|gb|ETL44369.1|1.721e-7957.21riboflavin synthase, alpha subunit [Phytophthora p... [more]
gi|1210524498|dbj|GAX16756.1|2.300e-7956.14riboflavin synthase [Fistulifera solaris][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8006rna8006Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications