rna8005, rna8005 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8005
Unique Name	rna8005
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	495
Alignment location	KK037247.1:331812..333455 -

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Properties


Property Name	Value
Product	pap fibrillin family protein
Orig transcript id	gnl\|cribi\|Naga_100218g2.5299.mrna
Orig protein id	gnl\|cribi\|Naga_100218g2.5299
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:331812..333455 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100218g2	gene7751	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8005	rna8005-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22687.1	cds7983	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:331812..333455-
coding sequence from alignment at KK037247.1:331812..333455-

mRNA sequence

>rna8005 ID=rna8005|Name=rna8005|organism=Nannochloropsis gaditana|type=mRNA|length=495bp
ATGGCATCTGCTTCCTCCCCACGAGCTCCTACCTTGGGAGGGGAGCAAGG
TATTGGCTCCGAGCCTCCCGTTGAAGACAACACTTTGGCCAAGGCCGCCT
CCTCGAAGCCCCCGTCTTTTTTGGGACAAGCGCTGTCCCTCTTTCGAGCT
TCCTACGCAGTAAGCGTGCTCTTGAGCGCAACGACTGTAAATGTAGCGGC
AGCCTTGCTGATCCATGCTTTCACTCGGGACACTAAGAAGGCACAAGGGC
GATCGGTGTACGCGATCTGCATGATTACCAGCTGGGCTCTCAAGTTCATT
CCCTGGATCACTATCAAGGTCAAGCTGCCACCGCAACCGATAGACTTTGA
GCAATTCATCCTCACATCCAACCACATCTCATTCATGGATCTCTTCTTCA
TTCAGCACACCATCTCGGGACCATCCCCCTCGTCAAACGCATGTTCACGC
TCACGGGCGGCGTGCCCATCAAGATCCTGGGCAGCAGCTCCCTGA

protein sequence of rna8005

>rna8005-protein ID=rna8005-protein|Name=rna8005|organism=Nannochloropsis gaditana|type=polypeptide|length=306bp
MRAGSLLKAGLSTVALAQAFRPLSPPANRIPTTHILLPASSPGPCTSPPS
APVFTPPLFAAASDSSDWPSDSSDDDYTDRGDASSSGPDVVDATARATTR
KELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQ
GTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEV
SQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVT
LFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSPGTYYPTGVD
HTFTFK

mRNA from alignment at KK037247.1:331812..333455-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8005 ID=rna8005|Name=rna8005|organism=Nannochloropsis gaditana|type=mRNA|length=1644bp|location=Sequence derived from alignment at KK037247.1:331812..333455- (Nannochloropsis gaditana)
ATGCGCGCAGGTAGCCTTTTAAAGGCCGGTCTCTCGACTGTAGCCTTGGC
ACAAGCCTTCCGTCCTCTTTCCCCCCCCGCCAACAGGATACCGACCAGTG
AGTATGCGCTAGACGCCTCCCCTCGGTCATCCCGAGGGCCCCGTCCAGCT
GATTATCCAATATAATTATTATCTTATTGCAACTTGTGCCTCCTTTATCC
CCCTTCTCAATCTTCAGCCCACATTCTCCTGCCAGCCTCCTCCCCCGGCC
CTTGCACGTCGCCCCCGTCAGCGCCCGTCTTTACCCCGCCTCTATTTGCG
GCCGCGAGCGACTCATCCGACTGGCCCAGCGACAGCAGCGACGACGATTA
CACCGACCGCGGGGACGCGTCTTCCTCCGGACCTGACGTTGTCGACGCCA
CCGCTCGCGCCACCACCCGCAAGGAGCTCCAGCACGATCTCCTCCTCCTC
CTGGTTGGCCAGAATAAAGGCTTCAGCGTCTCGGAATCGGAGCGGGAGGA
CATCGACGACACGCTGCGCGACCTGGAGGCCGTCAACCCCACGCCTCGGC
CCACGGAGGCATTCTCTCAGGGCACCTCCCCGCTCTCGGGGACCTGGCGC
CTCGTCTACACCGACGCCTTGGACGTCCTCGTGCTCGGCCTCGTGCCCCT
GGCCGTGATCGGCAAGGTCTTCCAGAACATCTCCCCAGACGGAAAAAGCA
TTGCCAACGTGGTGGAGGTGAGCCAAGGGGCCAGCCAGCTCTCCTTCTTT
CCTCTGCTGGGCAAGCTCGGCGACAGCACGGCCCGCCTCCGCGTTGAAGC
GACGTCCGAGATCCTGTCGCCGACCCGCTTGTCCTTGACCTTCCAGAGCG
CGGGTTTCGAGCCCGTGACGCTATTCGGGATGGAGGTGGAGCAACAGCTG
CGAGTGCCGAAGGTAGGCTTTTATGGGAAATGAGGGAGATCTCTGGGCCC
AACTGGTTCCACAGAGTCTCCACATGAAAGTGTGAGCCGGTTGCATACTG
AAGGTTTGACCTTCTTCCTTTTTCTTTTCGCATTCCGTAGGTGGACTTCT
GGAGAAGCCCAAATGTGGGTTGGATCGAGACGACCTACGTGGACGAGAAG
ATCCGCATCGGACGATCCCCTGGTGGGCTGGGCGGCCAGGGCAGTGTCTT
TGTCTTCGTTCGGGAGGGTGGAGCTGGGATGTGGGGCGCCATGGAGAGTA
CTCGCTAGCCTCTGTGACTGGCTAGGACCCTTGGGTAAGGCGGGTGCTGC
CGAGCGGAGTTAGTGTACCCCATTGTGACGGAGAGGATAGTGATTTGTAA
CATGGAAGAAGCTGAAAGGCATGAGATAAGCTATAAGAAGCATTCGAACG
AAAACGTGGGGAAATCAAAAGAAATAAACATAGAGCGCGATGAAGTTAGG
ACAGCGGGTAGGCGTCAGAAACGAACGAAAATGGGAACTTCAAGATGAAT
GTTTTCTCAGCATCTCAGTAATACTAAAAGTATTGTATTTATGTACCTCA
TAGCTAATCCTTCACTGTGGAAAACGAGAGGCGGCCTGTATATCGCTGGT
CAATCCAACCTCCTGACCTCATAAAAGCCTATCGCCCTCCGCAACAGGTA
CTTACTACCCAACCGGCGTGGACCACACTTTCACCTTCAAATGA

Coding sequence (CDS) from alignment at KK037247.1:331812..333455-

>rna8005 ID=rna8005|Name=rna8005|organism=Nannochloropsis gaditana|type=CDS|length=3684bp|location=Sequence derived from alignment at KK037247.1:331812..333455- (Nannochloropsis gaditana)
GTACTTACTACCCAACCGGCGTGGACCACACTTTCACCTTCAAATGAGTG
GACTTCTGGAGAAGCCCAAATGTGGGTTGGATCGAGACGACCTACGTGGA
CGAGAAGATCCGCATCGGACGATCCCCTGCCCACATTCTCCTGCCAGCCT
CCTCCCCCGGCCCTTGCACGTCGCCCCCGTCAGCGCCCGTCTTTACCCCG
CCTCTATTTGCGGCCGCGAGCGACTCATCCGACTGGCCCAGCGACAGCAG
CGACGACGATTACACCGACCGCGGGGACGCGTCTTCCTCCGGACCTGACG
TTGTCGACGCCACCGCTCGCGCCACCACCCGCAAGGAGCTCCAGCACGAT
CTCCTCCTCCTCCTGGTTGGCCAGAATAAAGGCTTCAGCGTCTCGGAATC
GGAGCGGGAGGACATCGACGACACGCTGCGCGACCTGGAGGCCGTCAACC
CCACGCCTCGGCCCACGGAGGCATTCTCTCAGGGCACCTCCCCGCTCTCG
GGGACCTGGCGCCTCGTCTACACCGACGCCTTGGACGTCCTCGTGCTCGG
CCTCGTGCCCCTGGCCGTGATCGGCAAGGTCTTCCAGAACATCTCCCCAG
ACGGAAAAAGCATTGCCAACGTGGTGGAGGTGAGCCAAGGGGCCAGCCAG
CTCTCCTTCTTTCCTCTGCTGGGCAAGCTCGGCGACAGCACGGCCCGCCT
CCGCGTTGAAGCGACGTCCGAGATCCTGTCGCCGACCCGCTTGTCCTTGA
CCTTCCAGAGCGCGGGTTTCGAGCCCGTGACGCTATTCGGGATGGAGGTG
GAGCAACAGCTGCGAGTGCCGAAGATGCGCGCAGGTAGCCTTTTAAAGGC
CGGTCTCTCGACTGTAGCCTTGGCACAAGCCTTCCGTCCTCTTTCCCCCC
CCGCCAACAGGATACCGACCAGTACTTACTACCCAACCGGCGTGGACCAC
ACTTTCACCTTCAAATGAGTGGACTTCTGGAGAAGCCCAAATGTGGGTTG
GATCGAGACGACCTACGTGGACGAGAAGATCCGCATCGGACGATCCCCTG
CCCACATTCTCCTGCCAGCCTCCTCCCCCGGCCCTTGCACGTCGCCCCCG
TCAGCGCCCGTCTTTACCCCGCCTCTATTTGCGGCCGCGAGCGACTCATC
CGACTGGCCCAGCGACAGCAGCGACGACGATTACACCGACCGCGGGGACG
CGTCTTCCTCCGGACCTGACGTTGTCGACGCCACCGCTCGCGCCACCACC
CGCAAGGAGCTCCAGCACGATCTCCTCCTCCTCCTGGTTGGCCAGAATAA
AGGCTTCAGCGTCTCGGAATCGGAGCGGGAGGACATCGACGACACGCTGC
GCGACCTGGAGGCCGTCAACCCCACGCCTCGGCCCACGGAGGCATTCTCT
CAGGGCACCTCCCCGCTCTCGGGGACCTGGCGCCTCGTCTACACCGACGC
CTTGGACGTCCTCGTGCTCGGCCTCGTGCCCCTGGCCGTGATCGGCAAGG
TCTTCCAGAACATCTCCCCAGACGGAAAAAGCATTGCCAACGTGGTGGAG
GTGAGCCAAGGGGCCAGCCAGCTCTCCTTCTTTCCTCTGCTGGGCAAGCT
CGGCGACAGCACGGCCCGCCTCCGCGTTGAAGCGACGTCCGAGATCCTGT
CGCCGACCCGCTTGTCCTTGACCTTCCAGAGCGCGGGTTTCGAGCCCGTG
ACGCTATTCGGGATGGAGGTGGAGCAACAGCTGCGAGTGCCGAAGATGCG
CGCAGGTAGCCTTTTAAAGGCCGGTCTCTCGACTGTAGCCTTGGCACAAG
CCTTCCGTCCTCTTTCCCCCCCCGCCAACAGGATACCGACCAGTACTTAC
TACCCAACCGGCGTGGACCACACTTTCACCTTCAAATGAGTGGACTTCTG
GAGAAGCCCAAATGTGGGTTGGATCGAGACGACCTACGTGGACGAGAAGA
TCCGCATCGGACGATCCCCTGCCCACATTCTCCTGCCAGCCTCCTCCCCC
GGCCCTTGCACGTCGCCCCCGTCAGCGCCCGTCTTTACCCCGCCTCTATT
TGCGGCCGCGAGCGACTCATCCGACTGGCCCAGCGACAGCAGCGACGACG
ATTACACCGACCGCGGGGACGCGTCTTCCTCCGGACCTGACGTTGTCGAC
GCCACCGCTCGCGCCACCACCCGCAAGGAGCTCCAGCACGATCTCCTCCT
CCTCCTGGTTGGCCAGAATAAAGGCTTCAGCGTCTCGGAATCGGAGCGGG
AGGACATCGACGACACGCTGCGCGACCTGGAGGCCGTCAACCCCACGCCT
CGGCCCACGGAGGCATTCTCTCAGGGCACCTCCCCGCTCTCGGGGACCTG
GCGCCTCGTCTACACCGACGCCTTGGACGTCCTCGTGCTCGGCCTCGTGC
CCCTGGCCGTGATCGGCAAGGTCTTCCAGAACATCTCCCCAGACGGAAAA
AGCATTGCCAACGTGGTGGAGGTGAGCCAAGGGGCCAGCCAGCTCTCCTT
CTTTCCTCTGCTGGGCAAGCTCGGCGACAGCACGGCCCGCCTCCGCGTTG
AAGCGACGTCCGAGATCCTGTCGCCGACCCGCTTGTCCTTGACCTTCCAG
AGCGCGGGTTTCGAGCCCGTGACGCTATTCGGGATGGAGGTGGAGCAACA
GCTGCGAGTGCCGAAGATGCGCGCAGGTAGCCTTTTAAAGGCCGGTCTCT
CGACTGTAGCCTTGGCACAAGCCTTCCGTCCTCTTTCCCCCCCCGCCAAC
AGGATACCGACCAGTACTTACTACCCAACCGGCGTGGACCACACTTTCAC
CTTCAAATGAGTGGACTTCTGGAGAAGCCCAAATGTGGGTTGGATCGAGA
CGACCTACGTGGACGAGAAGATCCGCATCGGACGATCCCCTGCCCACATT
CTCCTGCCAGCCTCCTCCCCCGGCCCTTGCACGTCGCCCCCGTCAGCGCC
CGTCTTTACCCCGCCTCTATTTGCGGCCGCGAGCGACTCATCCGACTGGC
CCAGCGACAGCAGCGACGACGATTACACCGACCGCGGGGACGCGTCTTCC
TCCGGACCTGACGTTGTCGACGCCACCGCTCGCGCCACCACCCGCAAGGA
GCTCCAGCACGATCTCCTCCTCCTCCTGGTTGGCCAGAATAAAGGCTTCA
GCGTCTCGGAATCGGAGCGGGAGGACATCGACGACACGCTGCGCGACCTG
GAGGCCGTCAACCCCACGCCTCGGCCCACGGAGGCATTCTCTCAGGGCAC
CTCCCCGCTCTCGGGGACCTGGCGCCTCGTCTACACCGACGCCTTGGACG
TCCTCGTGCTCGGCCTCGTGCCCCTGGCCGTGATCGGCAAGGTCTTCCAG
AACATCTCCCCAGACGGAAAAAGCATTGCCAACGTGGTGGAGGTGAGCCA
AGGGGCCAGCCAGCTCTCCTTCTTTCCTCTGCTGGGCAAGCTCGGCGACA
GCACGGCCCGCCTCCGCGTTGAAGCGACGTCCGAGATCCTGTCGCCGACC
CGCTTGTCCTTGACCTTCCAGAGCGCGGGTTTCGAGCCCGTGACGCTATT
CGGGATGGAGGTGGAGCAACAGCTGCGAGTGCCGAAGATGCGCGCAGGTA
GCCTTTTAAAGGCCGGTCTCTCGACTGTAGCCTTGGCACAAGCCTTCCGT
CCTCTTTCCCCCCCCGCCAACAGGATACCGACCA

Synonyms

Publications