EWM22687.1, cds7983 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|585103253|gb|EWM22687.1| (pap fibrillin family protein [Nannochloropsis gaditana]) HSP 1 Score: 613.224 bits (1580), Expect = 0.000e+0 Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0
Query: 1 MRAGSLLKAGLSTVALAQAFRPLSPPANRIPTTHILLPASSPGPCTSPPSAPVFTPPLFAAASDSSDWPSDSSDDDYTDRGDASSSGPDVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSPGTYYPTGVDHTFTFK 306
MRAGSLLKAGLSTVALAQAFRPLSPPANRIPTTHILLPASSPGPCTSPPSAPVFTPPLFAAASDSSDWPSDSSDDDYTDRGDASSSGPDVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSPGTYYPTGVDHTFTFK
Sbjct: 1 MRAGSLLKAGLSTVALAQAFRPLSPPANRIPTTHILLPASSPGPCTSPPSAPVFTPPLFAAASDSSDWPSDSSDDDYTDRGDASSSGPDVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSPGTYYPTGVDHTFTFK 306
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|553184686|ref|XP_005854131.1| (pap fibrillin family protein [Nannochloropsis gaditana CCMP526] >gi|422294929|gb|EKU22229.1| pap fibrillin family protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 580.482 bits (1495), Expect = 0.000e+0 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
Query: 1 MRAGSLLKAGLSTVALAQAFRPLSPPANRIPTTHILLPASSPGPCTSPPSAPVFTPPLFAAASDSSDWPSDSSDDDYTDRGDASSSGPDVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSPG 292
MRAGSLLKAGLSTVALAQAFRPLSPPANRIPTTHILLPASSPGPCTSPPSAPVFTPPLFAAASDSSDWPSDSSDDDYTDRGDASSSGPDVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSPG
Sbjct: 1 MRAGSLLKAGLSTVALAQAFRPLSPPANRIPTTHILLPASSPGPCTSPPSAPVFTPPLFAAASDSSDWPSDSSDDDYTDRGDASSSGPDVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSPG 292
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|873220343|emb|CEM35772.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 149.443 bits (376), Expect = 2.624e-39 Identity = 88/199 (44.22%), Postives = 122/199 (61.31%), Query Frame = 0
Query: 100 RKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDG--KSIANVVEVS-QGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGW--IETTYVDEKIRIGRSPGT 293
R +L+ DL L+ G N+GF+ + DI + L LE+VNP P+P G+SPL+G WRL++T+ALDVL+LGL+P +G+V+QN++ DG + NVVE+ Q S + F LG + ARLRV A++E+ S ++L LTFQS FEP T G V + PKV+ R G +ETTYVDE +RI R G
Sbjct: 106 RAKLKKDLYLMCPGVNRGFNAKRPDSADILEVLELLESVNPNPQPN-LMKDGSSPLNGEWRLLFTNALDVLLLGLIPAVQVGQVYQNVNLDGVVNAAENVVELQPQFDSVANRF-----LGSTVARLRVRASAEVESDSKLYLTFQSVAFEPDTFLGQLVPRNWPWPKVNLNREGRRGGGPVETTYVDEDLRIARGFGN 298
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|298705906|emb|CBJ29036.1| (PAP fibrillin [Ectocarpus siliculosus]) HSP 1 Score: 137.117 bits (344), Expect = 5.856e-35 Identity = 87/219 (39.73%), Postives = 133/219 (60.73%), Query Frame = 0
Query: 77 YTDRGDASSSGPDVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKL-GDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSP--NVGWIETTYVDEKIRIGRSPG 292
Y+ R SSS V++T+ ++L+ LL G N+G S E ++E+I + + +LE NP P P + FS+G S L+G W+L++T ALDVL LGL+P +G++FQNI+ DG I NVV++ A+ P+L + G ++ARL V A + + RL+L+F+ + + P TL G +V L KV F P N GWI+TT++DE+IR+ R+ G
Sbjct: 57 YSARSRLSSSVIVDVESTSTDEPVEDLKARLLRASAGVNRGLSCREGDQEEILEIVEELERQNPNPTPNDGFSEGASILTGEWKLIFTSALDVLSLGLIPGVEVGQIFQNINEDGTEITNVVDLQPKAA-----PVLERFAGSTSARLEVLAAASLEGDKRLTLSFRRSQYSPQTLLGRDVSATLPPFKVSFPEIPGTNAGWIDTTFIDEEIRVARAFG 270
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|299470424|emb|CBN80185.1| (plastid lipid associated protein [Ectocarpus siliculosus]) HSP 1 Score: 109.768 bits (273), Expect = 1.655e-23 Identity = 63/166 (37.95%), Postives = 95/166 (57.23%), Query Frame = 0
Query: 92 DATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVE 257
DA A TR L+ LL + N+GF E +R D+++ + LE NP P+ E F G+SPL+G W+L+YT +LDVL L + P +GK+FQ I DG+SI N++E+ Q F + LG S L V+ +E +S +R++L F + +LFG E++
Sbjct: 136 DAVGDAATRAALKQKLLRKVATLNRGFVAEELDRLDVEEIIEMLEMENPNPKSCEGFETGSSPLAGRWQLLYTTSLDVLSLQINPAVTVGKIFQQIESDGRSIQNIIEL-----QPPFAAVNKILGSSMTTLTVKLETEPVSDSRINLKFVRTEIKANSLFGRELD 296
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|546307317|ref|XP_005713282.1| (unnamed protein product [Chondrus crispus] >gi|507109667|emb|CDF33479.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 101.679 bits (252), Expect = 1.849e-21 Identity = 78/236 (33.05%), Postives = 119/236 (50.42%), Query Frame = 0
Query: 78 TDRGDASSSGP--------DV----VDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLV-PLAVIGKVFQNISP---DGKS-----IANVVEVSQGASQLSFFPLLGKLG-DSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSP 291
+D G+ S S P DV VDA RA +L+ L + N+G + S +R +I + +LE P P + L G WRL++T+ALDVL LGL+ P+A +G++FQNI +GK I NVV++ + +F P+ LG S + V A S +R+ +TF + +FGM++ + +P F VG+IETT++DE IR+ R+P
Sbjct: 51 SDFGNGSDSAPSDVELEAVDVPASAVDAQTRAVPISDLKCSLYAAVSSTNRGLTASADDRANILSLVAELERAKPPTAPAD----DPGMLCGRWRLLFTNALDVLSLGLLAPVAQVGQIFQNIYEVPLEGKGDYDYDIENVVQL-----EPAFAPVSNVLGGQSITSITVSAEGRKTSDSRVDITFVQNAIKQEKIFGMQLPNE--IPAAKFAIGSPVGYIETTFLDEDIRVARAP 275
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|1194460823|gb|OUC14398.1| (fibrillin [Alkalinema sp. CACIAM 70d]) HSP 1 Score: 95.1301 bits (235), Expect = 5.322e-20 Identity = 65/197 (32.99%), Postives = 98/197 (49.75%), Query Frame = 0
Query: 104 QHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSA--------GFEPVTLFGMEVEQQLRVPKVDFWRSP--NVGWIETTYVDEKIRIGRS 290
+ +LL + G+N+G +E+++ I + LE NPTPRPTEA L+G WRL+YT + ++L L +P +G+++Q I P G + NV EV+ P L L V A E +S RL + F+ A G++ ++E R VDF P GWI+ TY+DE +R+GR
Sbjct: 4 KAELLTAIAGKNRGLLATETDKLAIAAAVAMLEDRNPTPRPTEAIDL----LAGDWRLLYTTSQELLGLNRIPFNTLGEIYQCIRPKGNRVYNVAEVAG-------LPFLEGL------FSVVAQFEPISERRLEVKFERAIAGLQRPIGYQSPRALIRDIESGKRFLAVDFQIPPRDRNGWIDVTYLDEDLRLGRG 183
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|1132224595|ref|WP_075892913.1| (fibrillin [Limnothrix rosea] >gi|1115252482|gb|OKH16978.1| fibrillin [Limnothrix rosea IAM M-220]) HSP 1 Score: 93.2041 bits (230), Expect = 3.777e-19 Identity = 69/203 (33.99%), Postives = 98/203 (48.28%), Query Frame = 0
Query: 103 LQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPK--------------VDFW--RSPNVGWIETTYVDEKIRIGR 289
L+ DLL ++ G+N+G +E +R +I + LE NPTP+P EA L G WRLVYT + +L + PL +G+V+Q I P+ I N+ EV P L L + VEA+ EI+S R+++ F L G + R PK +DF N GW+E TY+DE +RIGR
Sbjct: 3 LKTDLLEIVAGKNRGLLTTEVDRANILTVIDRLEDQNPTPKPLEA----PKLLEGDWRLVYTTSNGILGINRFPLMQLGQVYQCIRPEQNKIYNIAEVEG-------IPFLEGL------VLVEASLEIVSDKRVNVFFHRF------LVGSQRLMDYRFPKGLIDSLISGKKFLPIDFGINSKENNGWLEITYLDEDLRIGR 182
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|515884795|ref|WP_017315378.1| (fibrillin [Mastigocladopsis repens]) HSP 1 Score: 91.6633 bits (226), Expect = 1.182e-18 Identity = 59/193 (30.57%), Postives = 104/193 (53.89%), Query Frame = 0
Query: 106 DLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVS-----QGASQLS--FFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPN--VGWIETTYVDEKIRIGR 289
+LL + G+N+G +E +R+ I + +LE +NPTPRP E+ T L+G WRL+YT + +L L +P +G+++Q I + S+ N+ E+ +G ++ F P+ G+ R+ V+ I+S RL G++ F ++E ++ +DF + N GW++ TY+D+ +RIGR
Sbjct: 6 NLLEAIAGKNRGLLATEQDRQGILVAIANLEDINPTPRPIES----THLLNGNWRLIYTTSKALLNLDNLPFYKLGQIYQYIRVENNSVYNIAEIYGLPFVEGIVSVAAKFEPVSGR------RVNVKFERSIISLQRL------IGYDSPESFIQQIEVGQKLTAIDFPLNSNEQQGWLDITYIDDNLRIGR 182
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|1200106358|ref|WP_087545771.1| (fibrillin [Nostocales cyanobacterium HT-58-2] >gi|1199832936|gb|ARV62750.1| fibrillin [Nostocales cyanobacterium HT-58-2]) HSP 1 Score: 90.1225 bits (222), Expect = 4.416e-18 Identity = 62/195 (31.79%), Postives = 101/195 (51.79%), Query Frame = 0
Query: 104 QHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVS-----QGASQLS--FFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDF--WRSPNVGWIETTYVDEKIRIGR 289
+ DLL L G+N+G +E E++ I + LE VNPTPRP EA T+ L+G WRL+YT + +L + +PL +G+++Q I + S+ N+ E +G ++ F P+ G+ R+ V+ I+ RL G+E F ++E ++ +DF GW++ TY+D +RIGR
Sbjct: 4 KADLLEALAGKNRGLLATEQEKQAILVAIAKLEDVNPTPRPVEA----TNLLNGDWRLIYTTSKALLNIDNLPLYKLGQIYQCIRVETNSVYNIAETYGLPFLEGIVSVAAKFEPVSGR------RVNVKFERSIIGLQRL------IGYESPESFIEQIELGKKLTAIDFPLNSDEQQGWLDITYIDNNLRIGR 182 The following BLAST results are available for this feature:
BLAST of EWM22687.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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