EWM22687.1, cds7983 (CDS) Nannochloropsis gaditana

Overview
NameEWM22687.1
Unique Namecds7983
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:333359..333455 -
Alignment locationKK037247.1:332544..333238 -
Alignment locationKK037247.1:332334..332415 -
Alignment locationKK037247.1:331812..331858 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22687.1
Productpap fibrillin family protein
Orig transcript idgnl|cribi|Naga_100218g2.5299.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:333359..333455 -
KK037247.1supercontigKK037247.1:332544..333238 -
KK037247.1supercontigKK037247.1:332334..332415 -
KK037247.1supercontigKK037247.1:331812..331858 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR006843PAP/fibrillin_dom
Homology
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|585103253|gb|EWM22687.1| (pap fibrillin family protein [Nannochloropsis gaditana])

HSP 1 Score: 613.224 bits (1580), Expect = 0.000e+0
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0
Query:    1 MRAGSLLKAGLSTVALAQAFRPLSPPANRIPTTHILLPASSPGPCTSPPSAPVFTPPLFAAASDSSDWPSDSSDDDYTDRGDASSSGPDVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSPGTYYPTGVDHTFTFK 306
            MRAGSLLKAGLSTVALAQAFRPLSPPANRIPTTHILLPASSPGPCTSPPSAPVFTPPLFAAASDSSDWPSDSSDDDYTDRGDASSSGPDVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSPGTYYPTGVDHTFTFK
Sbjct:    1 MRAGSLLKAGLSTVALAQAFRPLSPPANRIPTTHILLPASSPGPCTSPPSAPVFTPPLFAAASDSSDWPSDSSDDDYTDRGDASSSGPDVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSPGTYYPTGVDHTFTFK 306          
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|553184686|ref|XP_005854131.1| (pap fibrillin family protein [Nannochloropsis gaditana CCMP526] >gi|422294929|gb|EKU22229.1| pap fibrillin family protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 580.482 bits (1495), Expect = 0.000e+0
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
Query:    1 MRAGSLLKAGLSTVALAQAFRPLSPPANRIPTTHILLPASSPGPCTSPPSAPVFTPPLFAAASDSSDWPSDSSDDDYTDRGDASSSGPDVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSPG 292
            MRAGSLLKAGLSTVALAQAFRPLSPPANRIPTTHILLPASSPGPCTSPPSAPVFTPPLFAAASDSSDWPSDSSDDDYTDRGDASSSGPDVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSPG
Sbjct:    1 MRAGSLLKAGLSTVALAQAFRPLSPPANRIPTTHILLPASSPGPCTSPPSAPVFTPPLFAAASDSSDWPSDSSDDDYTDRGDASSSGPDVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSPG 292          
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|873220343|emb|CEM35772.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 149.443 bits (376), Expect = 2.624e-39
Identity = 88/199 (44.22%), Postives = 122/199 (61.31%), Query Frame = 0
Query:  100 RKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDG--KSIANVVEVS-QGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGW--IETTYVDEKIRIGRSPGT 293
            R +L+ DL L+  G N+GF+    +  DI + L  LE+VNP P+P      G+SPL+G WRL++T+ALDVL+LGL+P   +G+V+QN++ DG   +  NVVE+  Q  S  + F     LG + ARLRV A++E+ S ++L LTFQS  FEP T  G  V +    PKV+  R    G   +ETTYVDE +RI R  G 
Sbjct:  106 RAKLKKDLYLMCPGVNRGFNAKRPDSADILEVLELLESVNPNPQPN-LMKDGSSPLNGEWRLLFTNALDVLLLGLIPAVQVGQVYQNVNLDGVVNAAENVVELQPQFDSVANRF-----LGSTVARLRVRASAEVESDSKLYLTFQSVAFEPDTFLGQLVPRNWPWPKVNLNREGRRGGGPVETTYVDEDLRIARGFGN 298          
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|298705906|emb|CBJ29036.1| (PAP fibrillin [Ectocarpus siliculosus])

HSP 1 Score: 137.117 bits (344), Expect = 5.856e-35
Identity = 87/219 (39.73%), Postives = 133/219 (60.73%), Query Frame = 0
Query:   77 YTDRGDASSSGPDVVDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKL-GDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSP--NVGWIETTYVDEKIRIGRSPG 292
            Y+ R   SSS    V++T+     ++L+  LL    G N+G S  E ++E+I + + +LE  NP P P + FS+G S L+G W+L++T ALDVL LGL+P   +G++FQNI+ DG  I NVV++   A+     P+L +  G ++ARL V A + +    RL+L+F+ + + P TL G +V   L   KV F   P  N GWI+TT++DE+IR+ R+ G
Sbjct:   57 YSARSRLSSSVIVDVESTSTDEPVEDLKARLLRASAGVNRGLSCREGDQEEILEIVEELERQNPNPTPNDGFSEGASILTGEWKLIFTSALDVLSLGLIPGVEVGQIFQNINEDGTEITNVVDLQPKAA-----PVLERFAGSTSARLEVLAAASLEGDKRLTLSFRRSQYSPQTLLGRDVSATLPPFKVSFPEIPGTNAGWIDTTFIDEEIRVARAFG 270          
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|299470424|emb|CBN80185.1| (plastid lipid associated protein [Ectocarpus siliculosus])

HSP 1 Score: 109.768 bits (273), Expect = 1.655e-23
Identity = 63/166 (37.95%), Postives = 95/166 (57.23%), Query Frame = 0
Query:   92 DATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVE 257
            DA   A TR  L+  LL  +   N+GF   E +R D+++ +  LE  NP P+  E F  G+SPL+G W+L+YT +LDVL L + P   +GK+FQ I  DG+SI N++E+     Q  F  +   LG S   L V+  +E +S +R++L F     +  +LFG E++
Sbjct:  136 DAVGDAATRAALKQKLLRKVATLNRGFVAEELDRLDVEEIIEMLEMENPNPKSCEGFETGSSPLAGRWQLLYTTSLDVLSLQINPAVTVGKIFQQIESDGRSIQNIIEL-----QPPFAAVNKILGSSMTTLTVKLETEPVSDSRINLKFVRTEIKANSLFGRELD 296          
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|546307317|ref|XP_005713282.1| (unnamed protein product [Chondrus crispus] >gi|507109667|emb|CDF33479.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 101.679 bits (252), Expect = 1.849e-21
Identity = 78/236 (33.05%), Postives = 119/236 (50.42%), Query Frame = 0
Query:   78 TDRGDASSSGP--------DV----VDATARATTRKELQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLV-PLAVIGKVFQNISP---DGKS-----IANVVEVSQGASQLSFFPLLGKLG-DSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPNVGWIETTYVDEKIRIGRSP 291
            +D G+ S S P        DV    VDA  RA    +L+  L   +   N+G + S  +R +I   + +LE   P   P +        L G WRL++T+ALDVL LGL+ P+A +G++FQNI     +GK      I NVV++     + +F P+   LG  S   + V A     S +R+ +TF     +   +FGM++  +  +P   F     VG+IETT++DE IR+ R+P
Sbjct:   51 SDFGNGSDSAPSDVELEAVDVPASAVDAQTRAVPISDLKCSLYAAVSSTNRGLTASADDRANILSLVAELERAKPPTAPAD----DPGMLCGRWRLLFTNALDVLSLGLLAPVAQVGQIFQNIYEVPLEGKGDYDYDIENVVQL-----EPAFAPVSNVLGGQSITSITVSAEGRKTSDSRVDITFVQNAIKQEKIFGMQLPNE--IPAAKFAIGSPVGYIETTFLDEDIRVARAP 275          
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|1194460823|gb|OUC14398.1| (fibrillin [Alkalinema sp. CACIAM 70d])

HSP 1 Score: 95.1301 bits (235), Expect = 5.322e-20
Identity = 65/197 (32.99%), Postives = 98/197 (49.75%), Query Frame = 0
Query:  104 QHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSA--------GFEPVTLFGMEVEQQLRVPKVDFWRSP--NVGWIETTYVDEKIRIGRS 290
            + +LL  + G+N+G   +E+++  I   +  LE  NPTPRPTEA       L+G WRL+YT + ++L L  +P   +G+++Q I P G  + NV EV+         P L  L        V A  E +S  RL + F+ A        G++       ++E   R   VDF   P    GWI+ TY+DE +R+GR 
Sbjct:    4 KAELLTAIAGKNRGLLATETDKLAIAAAVAMLEDRNPTPRPTEAIDL----LAGDWRLLYTTSQELLGLNRIPFNTLGEIYQCIRPKGNRVYNVAEVAG-------LPFLEGL------FSVVAQFEPISERRLEVKFERAIAGLQRPIGYQSPRALIRDIESGKRFLAVDFQIPPRDRNGWIDVTYLDEDLRLGRG 183          
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|1132224595|ref|WP_075892913.1| (fibrillin [Limnothrix rosea] >gi|1115252482|gb|OKH16978.1| fibrillin [Limnothrix rosea IAM M-220])

HSP 1 Score: 93.2041 bits (230), Expect = 3.777e-19
Identity = 69/203 (33.99%), Postives = 98/203 (48.28%), Query Frame = 0
Query:  103 LQHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVSQGASQLSFFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPK--------------VDFW--RSPNVGWIETTYVDEKIRIGR 289
            L+ DLL ++ G+N+G   +E +R +I   +  LE  NPTP+P EA       L G WRLVYT +  +L +   PL  +G+V+Q I P+   I N+ EV          P L  L      + VEA+ EI+S  R+++ F         L G +     R PK              +DF      N GW+E TY+DE +RIGR
Sbjct:    3 LKTDLLEIVAGKNRGLLTTEVDRANILTVIDRLEDQNPTPKPLEA----PKLLEGDWRLVYTTSNGILGINRFPLMQLGQVYQCIRPEQNKIYNIAEVEG-------IPFLEGL------VLVEASLEIVSDKRVNVFFHRF------LVGSQRLMDYRFPKGLIDSLISGKKFLPIDFGINSKENNGWLEITYLDEDLRIGR 182          
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|515884795|ref|WP_017315378.1| (fibrillin [Mastigocladopsis repens])

HSP 1 Score: 91.6633 bits (226), Expect = 1.182e-18
Identity = 59/193 (30.57%), Postives = 104/193 (53.89%), Query Frame = 0
Query:  106 DLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVS-----QGASQLS--FFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDFWRSPN--VGWIETTYVDEKIRIGR 289
            +LL  + G+N+G   +E +R+ I   + +LE +NPTPRP E+    T  L+G WRL+YT +  +L L  +P   +G+++Q I  +  S+ N+ E+      +G   ++  F P+ G+      R+ V+    I+S  RL       G++    F  ++E   ++  +DF  + N   GW++ TY+D+ +RIGR
Sbjct:    6 NLLEAIAGKNRGLLATEQDRQGILVAIANLEDINPTPRPIES----THLLNGNWRLIYTTSKALLNLDNLPFYKLGQIYQYIRVENNSVYNIAEIYGLPFVEGIVSVAAKFEPVSGR------RVNVKFERSIISLQRL------IGYDSPESFIQQIEVGQKLTAIDFPLNSNEQQGWLDITYIDDNLRIGR 182          
BLAST of EWM22687.1 vs. NCBI_GenBank
Match: gi|1200106358|ref|WP_087545771.1| (fibrillin [Nostocales cyanobacterium HT-58-2] >gi|1199832936|gb|ARV62750.1| fibrillin [Nostocales cyanobacterium HT-58-2])

HSP 1 Score: 90.1225 bits (222), Expect = 4.416e-18
Identity = 62/195 (31.79%), Postives = 101/195 (51.79%), Query Frame = 0
Query:  104 QHDLLLLLVGQNKGFSVSESEREDIDDTLRDLEAVNPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSIANVVEVS-----QGASQLS--FFPLLGKLGDSTARLRVEATSEILSPTRLSLTFQSAGFEPVTLFGMEVEQQLRVPKVDF--WRSPNVGWIETTYVDEKIRIGR 289
            + DLL  L G+N+G   +E E++ I   +  LE VNPTPRP EA    T+ L+G WRL+YT +  +L +  +PL  +G+++Q I  +  S+ N+ E       +G   ++  F P+ G+      R+ V+    I+   RL       G+E    F  ++E   ++  +DF        GW++ TY+D  +RIGR
Sbjct:    4 KADLLEALAGKNRGLLATEQEKQAILVAIAKLEDVNPTPRPVEA----TNLLNGDWRLIYTTSKALLNIDNLPLYKLGQIYQCIRVETNSVYNIAETYGLPFLEGIVSVAAKFEPVSGR------RVNVKFERSIIGLQRL------IGYESPESFIEQIELGKKLTAIDFPLNSDEQQGWLDITYIDNNLRIGR 182          
The following BLAST results are available for this feature:
BLAST of EWM22687.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103253|gb|EWM22687.1|0.000e+0100.00pap fibrillin family protein [Nannochloropsis gadi... [more]
gi|553184686|ref|XP_005854131.1|0.000e+0100.00pap fibrillin family protein [Nannochloropsis gadi... [more]
gi|873220343|emb|CEM35772.1|2.624e-3944.22unnamed protein product [Vitrella brassicaformis C... [more]
gi|298705906|emb|CBJ29036.1|5.856e-3539.73PAP fibrillin [Ectocarpus siliculosus][more]
gi|299470424|emb|CBN80185.1|1.655e-2337.95plastid lipid associated protein [Ectocarpus silic... [more]
gi|546307317|ref|XP_005713282.1|1.849e-2133.05unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|1194460823|gb|OUC14398.1|5.322e-2032.99fibrillin [Alkalinema sp. CACIAM 70d][more]
gi|1132224595|ref|WP_075892913.1|3.777e-1933.99fibrillin [Limnothrix rosea] >gi|1115252482|gb|OKH... [more]
gi|515884795|ref|WP_017315378.1|1.182e-1830.57fibrillin [Mastigocladopsis repens][more]
gi|1200106358|ref|WP_087545771.1|4.416e-1831.79fibrillin [Nostocales cyanobacterium HT-58-2] >gi|... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8005rna8005Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications