rna8002, rna8002 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8002
Unique Name	rna8002
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2636
Alignment location	KK037247.1:328044..329340 +

Link to JBrowse

Properties


Property Name	Value
Product	chaperone protein
Orig transcript id	gnl\|cribi\|Naga_100340g1.5991.mrna
Orig protein id	gnl\|cribi\|Naga_100340g1.5991
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:328044..329340 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100340g1	gene7748	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8002	rna8002-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22695.1	cds7980	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:328044..329340+
coding sequence from alignment at KK037247.1:328044..329340+

mRNA sequence

>rna8002 ID=rna8002|Name=rna8002|organism=Nannochloropsis gaditana|type=mRNA|length=2636bp
GCCAACATTACGGACGCTACGCTTACCGAAACGGCCGCTTTCATCCTCAA
AGTTGTGACACGTTTAAGAGAGGATGTCTCTTTCTATTGCCTTGGACCGA
AAGTATCCAACGTCACTCTAAGTTGATATCGATGGGTTGCCTCCCCATAA
CCATCCTACAACCACGCACAGTACGTAAGGAAAGCAATATGGAAGAGGGA
AGTCAGGGGCACGGGGAGACAGTGCAGCTCCTGTCCTTGCTTGCAGCGCT
TTCAGACCTCCTTCCTCACCACGATGAAGCGTTACAAAAGCCTCTTGCAC
CGCAAGCCTCTTCCCATGCACGTCCAGGCCAGCAAGGCCTTAGAGCTGAT
GCAGCCGCCCCCTCCCTCCCTGCGGGCTCAGTGTTGCCAGTCCCAAGCCC
GACCACTCCCTCCTCCACGGCCAGCCCCGGCCCTCCCGGACATAAGGGTG
CGACGCCTCTCTCAGCTCAGGCTAGACGCAGATTCAGGAAGCTTGTGGCT
GTTTTGCAGGACTTGTTGGAGGGGAGGAAGACTCGGAGACTGCTGGCAGC
GACGCCTGTGCTTGGGCCCCATCAGACCACCGTGCCAGCGGCGCCGGCCG
CGGCGAGAAGGTCCATAGCAAGATGGGGTTGATCGCCTCTCCATTTTCCT
CCCCTTGCACCTCCCCCCCTCCTCCACGTGCCCCGCGACAGCCTCCTCCT
TCGGCTCCTCCTCCCCCTCCTTCGCCTCGCCCCCGTCCGCCGCCTCCCCC
TCCTTCTCCTCTCCCTGCTCCTTCACATGCCACGGCAACGTGTTAAGTGG
GCCGTCGGCAGCTGCGGGCGCCCTCGGCCATGGAGCTTCCTCCCCCTCCT
CTTTCCCCTCCTCCATCCCGCCCTCCCTCCCCTCCCTTTCCTCCCTTTCC
TCCCTCCAGCTGGTGACGGCGGACGCGGGATGCCCAAGCCGGAGACAGGG
AGGAGGAGGGGGCGGAGAGGAGGCTCGGGGCCGGGCTCCAGTTGGATCCA
CAGAGACCTCGCTGCCCGGGCCCCCGCCTCCCAAGCCCTCCTCCCTACTC
CCTCCGCCCCCCCCCTCCACCGGCATCACTACCAGCAGCACCTGCACCAC
GCCCACCAACCTGCCTTCCCCTCCTCCCCCTCCCCGTCTCCCTCCTCCTT
TTTCCCCTCCTCCTCCTCCTCCACGCTTCTCGCCCTCAGCTCCCTCTCCC
ACGCCCTCTCCTCCCCCTCCGTCGCCTACCCCCCCACGGCCTTCCTTCCC
TCGGCGCCCCTGCCCTCCCTCTCCGCCCGCCTGAGCGCTCTCTCCTCCCC
CGACCTCCTCCACATGATCTTCCCCTTCCTCCTCCATCGGGCACGCCCCC
AGGAGGCCCGCGCCGTCCTCACCACCCTCTCCCTCGTCAACCGCCGCTTC
CACGCCCTCGCCTGCTGGGAGGAATACTGGCGGCCCGTCGCCGAGGGCCT
GCTCCCTGTCCTGGCAGTGCCGCGCCGACACTCCCCGAGGCGGCAGGAGG
AGGAGAAGGCGGCCCGGGGCGCGGGGGAGGGGGGGGGGAGGCGGGGGGAG
GACTTCCGCGGCTACCTGCTCAAGTACGGGCACTGCCTCCTGCACCGGCG
GGCGTGGATGGGCGAGGCCCTGGAGGACGGCTTCTCGCTCTCCTTCGAGG
TGTGGGACGCCATGGACGGGCTGCGCATGCTCTCCGCCTCGGGCCCCATC
CGCGTGCAGATGGACCAACAGGGCGGCTTCACCTCTCTGCGCATGGGGGG
GACTCACCGACGCGAGGTCCCCGGACCCGCCTTCTCGGCCGCCAGCCGCG
ACCCCCTGCGCCGCCGCTTCGCCTCCATGGAGGACTACTTCGGACGCGGG
CACCTCCCGGAATTCGGCGCGGCCCTCTCGGTCCGCGTGACCGTCACGGA
CGAGCGGACGGGGCGCATGGCCCTCCTCTGGTCCACGCGAAAGGACGCGG
CCTACCTGACGGAGGCGCCGCTCGCTTACTGGGAGCCCTTCCTGCCCGAA
GGCTCCATCTCCTGCTTCCTCGACCACTGGTCCCCCTTGATGTGCCCCGC
TTACGACGGGGAGAGCATGACCGTCACCATCGGCTTCCACGTCTGCCCGG
AGGCCGCGGGAGAGGATGGCGAGGGGGGGGAGGGAGGGAGGGGGTGTGGG
GGAGCAGGAGAAGCTGTACCGACTGGCGGGGGGGGACGTGGAGCGGTACG
AAGAGCACCAGTCTTACATCTCCATCACCTTCATGACCCTCAACACCAAC
GGGATACACCAGTTCTTCCGCTCTCTGCTCAAGGAGGGGTGACCACGGGG
GGGAAAGGGAAGGGGCGGGGAAGAGCCAGAAAGAATGCCATGTTTCCTGT
ACAGAAATTTAAACGCCTGCCTTTTTATACAACGGAAGGGCTCCGAGCTG
TTTGTAATCACAGAAGCGTTGAGGCATGCATAGTGTATATAGGAAGGTCG
GCGGGGAGGGAGGCTGCAGTACGAAGAGGGGCCGAGCCCGGCCCTTTGGA
GGGTCACGGGCTGTGCGGGACGGGGAATATTCGTCAAGCATTTAGCAAGC
TTGCATGCAGTCGCAAGTCCTCAGCGGACTCACAGACGCTCACAGAATTC
GAAGGCCCCGGGAGGGGTACAAGGGTGAGGAAATAA

protein sequence of rna8002

>rna8002-protein ID=rna8002-protein|Name=rna8002|organism=Nannochloropsis gaditana|type=polypeptide|length=288bp
MERKAWAFICLIWCILIASTTSFDFFQSRTTSGGSFFGGSGGFPGGPGGF
YRPDSGGDGENGGDSDQGGYYATLGIPKTSTLSEVKRAYRRLVVRLHPDK
GGDEKAFKALQEAYEVLSDPAKRRLYDAYGKAGVEMGSGAQGGRPEDVFS
SFFGSGRARGFGGTGGPRRSPNLYLQVELTLEELFKGATRKVRLNRQKVV
DRRLVVEPKVLEAAFERGMQDGARLVLAGEAEGLGNAAPGDIIIQVRELK
HPTFVRRNADLLCEMKVTLTEALTGFERPLRHLDVWPT

mRNA from alignment at KK037247.1:328044..329340+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8002 ID=rna8002|Name=rna8002|organism=Nannochloropsis gaditana|type=mRNA|length=1297bp|location=Sequence derived from alignment at KK037247.1:328044..329340+ (Nannochloropsis gaditana)
ATGGAGCGGAAAGCCTGGGCATTCATATGCCTGATTTGGTGCATCCTTAT
CGCTTCCACGACCTCTTTTGACTTTTTCCAGGTAGGATGAATGCCGGCCT
CTCACCGTGTCCTTCAtggcccccgtcctcccctcgttATGTCATGGTAT
TTCTCCACGACATCATGCCGATAATTATTTATTGCTTTCCTTGGGTCCTT
AATCTCTCCTCTTGACATTCTTCTACCTatgcttttccttcttccacttt
cTCGCCCTTTTCTAGTCTCGTACTACTAGCGGCGGCAGCTTCTTTGGCGG
CAGCGGAGGCTTCCCAGGGGGTCCTGGAGGGTTTTATCGCCCGGACAgcg
gcggagatggagagaaCGGCGGAGATAGCGACCAAGGGGGCTACTACGCG
ACGCTGGGCATCCCAAAAACGAGCACCCTGAGCGAGGTCAAGCGCGCCTA
CCGGCGTCTCGTCGTGCGCCTGCACCCCGACAAAGGCGGGGACGAGAAGG
CGTTCAAGGCCTTGCAGGAGGCCTACGAGGTCCTCTCAGACCCCGCAAAG
AGGAGGCTCTACGATGCCTACGGCAAAGCAGGCGTGGAGATGGGGAGCGg
ggcccagggagggaggccagagGACGtgttctcctccttcttcggaTCGG
GCCGGGCGCGCGGCTTTGGCGGAACGGGCGGCCCCCGCCGGTCTCCCAAC
CTGTACCTGCAGGTGGAGCTGACCCTGGAAGAGCTCTTCAAAGGCGCGAC
GCGAAAGGTGCGCCTGAACCGACAGAAGGTAGTGGACCGgcggctggtgg
tggagcccAAGGTCTTGGAGGCCGCCTTCGAGCGGGGCATGCAGGACGGG
GCGCGTCTGgtgctggcgggggaggcggaggggctggggAATGCGGCCCC
GGGAGACATCATCATCCAGGTCAGGCGGGTCTGGCGCCAGGGACGAGGCT
CGTGCGCCTCCAGGACTCCCACGGGCgcctcaccccccccctctctccct
ccccctcccaccatcAGGTTCGCGAGCTCAAGCATCCCACCTTCGTCCGC
CGGAACGCCGACCTGCTCTGCGAGATGAAAGTGACTCTTACGGAGGCCTT
GACGGGCTTTGAGCGACCCTTACGCCACCTGGACGGTCGGCAGCTGTggg
tgaaggggaaggcggggcaggTGACGAGGCCGGGCTCGGTGTGGCtcttg
gagggggagggcatgccCGTGCGGGGGGAGCCCTCCTTGCGCGGCCGCCT
CTTTATCAAGTTCGCggtcgtcttccccccgaGTCTGGCCAACctga

Coding sequence (CDS) from alignment at KK037247.1:328044..329340+

>rna8002 ID=rna8002|Name=rna8002|organism=Nannochloropsis gaditana|type=CDS|length=3468bp|location=Sequence derived from alignment at KK037247.1:328044..329340+ (Nannochloropsis gaditana)
ATGGAGCGGAAAGCCTGGGCATTCATATGCCTGATTTGGTGCATCCTTAT
CGCTTCCACGACCTCTTTTGACTTTTTCCAGTCTCGTACTACTAGCGGCG
GCAGCTTCTTTGGCGGCAGCGGAGGCTTCCCAGGGGGTCCTGGAGGGTTT
TATCGCCCGGACAgcggcggagatggagagaaCGGCGGAGATAGCGACCA
AGGGGGCTACTACGCGACGCTGGGCATCCCAAAAACGAGCACCCTGAGCG
AGGTCAAGCGCGCCTACCGGCGTCTCGTCGTGCGCCTGCACCCCGACAAA
GGCGGGGACGAGAAGGCGTTCAAGGCCTTGCAGGAGGCCTACGAGGTCCT
CTCAGACCCCGCAAAGAGGAGGCTCTACGATGCCTACGGCAAAGCAGGCG
TGGAGATGGGGAGCGgggcccagggagggaggccagagGACGtgttctcc
tccttcttcggaTCGGGCCGGGCGCGCGGCTTTGGCGGAACGGGCGGCCC
CCGCCGGTCTCCCAACCTGTACCTGCAGGTGGAGCTGACCCTGGAAGAGC
TCTTCAAAGGCGCGACGCGAAAGGTGCGCCTGAACCGACAGAAGGTAGTG
GACCGgcggctggtggtggagcccAAGGTCTTGGAGGCCGCCTTCGAGCG
GGGCATGCAGGACGGGGCGCGTCTGgtgctggcgggggaggcggaggggc
tggggAATGCGGCCCCGGGAGACATCATCATCCAGGTTCGCGAGCTCAAG
CATCCCACCTTCGTCCGCCGGAACGCCGACCTGCTCTGCGAGATGAAAGT
GACTCTTACGGAGGCCTTGACGGGCTTTGAGCGACCCTTACGCCACCTGG
ACGTCTGGCCAACctgaATGGAGCGGAAAGCCTGGGCATTCATATGCCTG
ATTTGGTGCATCCTTATCGCTTCCACGACCTCTTTTGACTTTTTCCAGTC
TCGTACTACTAGCGGCGGCAGCTTCTTTGGCGGCAGCGGAGGCTTCCCAG
GGGGTCCTGGAGGGTTTTATCGCCCGGACAgcggcggagatggagagaaC
GGCGGAGATAGCGACCAAGGGGGCTACTACGCGACGCTGGGCATCCCAAA
AACGAGCACCCTGAGCGAGGTCAAGCGCGCCTACCGGCGTCTCGTCGTGC
GCCTGCACCCCGACAAAGGCGGGGACGAGAAGGCGTTCAAGGCCTTGCAG
GAGGCCTACGAGGTCCTCTCAGACCCCGCAAAGAGGAGGCTCTACGATGC
CTACGGCAAAGCAGGCGTGGAGATGGGGAGCGgggcccagggagggaggc
cagagGACGtgttctcctccttcttcggaTCGGGCCGGGCGCGCGGCTTT
GGCGGAACGGGCGGCCCCCGCCGGTCTCCCAACCTGTACCTGCAGGTGGA
GCTGACCCTGGAAGAGCTCTTCAAAGGCGCGACGCGAAAGGTGCGCCTGA
ACCGACAGAAGGTAGTGGACCGgcggctggtggtggagcccAAGGTCTTG
GAGGCCGCCTTCGAGCGGGGCATGCAGGACGGGGCGCGTCTGgtgctggc
gggggaggcggaggggctggggAATGCGGCCCCGGGAGACATCATCATCC
AGGTTCGCGAGCTCAAGCATCCCACCTTCGTCCGCCGGAACGCCGACCTG
CTCTGCGAGATGAAAGTGACTCTTACGGAGGCCTTGACGGGCTTTGAGCG
ACCCTTACGCCACCTGGACGTCTGGCCAACctgaATGGAGCGGAAAGCCT
GGGCATTCATATGCCTGATTTGGTGCATCCTTATCGCTTCCACGACCTCT
TTTGACTTTTTCCAGTCTCGTACTACTAGCGGCGGCAGCTTCTTTGGCGG
CAGCGGAGGCTTCCCAGGGGGTCCTGGAGGGTTTTATCGCCCGGACAgcg
gcggagatggagagaaCGGCGGAGATAGCGACCAAGGGGGCTACTACGCG
ACGCTGGGCATCCCAAAAACGAGCACCCTGAGCGAGGTCAAGCGCGCCTA
CCGGCGTCTCGTCGTGCGCCTGCACCCCGACAAAGGCGGGGACGAGAAGG
CGTTCAAGGCCTTGCAGGAGGCCTACGAGGTCCTCTCAGACCCCGCAAAG
AGGAGGCTCTACGATGCCTACGGCAAAGCAGGCGTGGAGATGGGGAGCGg
ggcccagggagggaggccagagGACGtgttctcctccttcttcggaTCGG
GCCGGGCGCGCGGCTTTGGCGGAACGGGCGGCCCCCGCCGGTCTCCCAAC
CTGTACCTGCAGGTGGAGCTGACCCTGGAAGAGCTCTTCAAAGGCGCGAC
GCGAAAGGTGCGCCTGAACCGACAGAAGGTAGTGGACCGgcggctggtgg
tggagcccAAGGTCTTGGAGGCCGCCTTCGAGCGGGGCATGCAGGACGGG
GCGCGTCTGgtgctggcgggggaggcggaggggctggggAATGCGGCCCC
GGGAGACATCATCATCCAGGTTCGCGAGCTCAAGCATCCCACCTTCGTCC
GCCGGAACGCCGACCTGCTCTGCGAGATGAAAGTGACTCTTACGGAGGCC
TTGACGGGCTTTGAGCGACCCTTACGCCACCTGGACGTCTGGCCAACctg
aATGGAGCGGAAAGCCTGGGCATTCATATGCCTGATTTGGTGCATCCTTA
TCGCTTCCACGACCTCTTTTGACTTTTTCCAGTCTCGTACTACTAGCGGC
GGCAGCTTCTTTGGCGGCAGCGGAGGCTTCCCAGGGGGTCCTGGAGGGTT
TTATCGCCCGGACAgcggcggagatggagagaaCGGCGGAGATAGCGACC
AAGGGGGCTACTACGCGACGCTGGGCATCCCAAAAACGAGCACCCTGAGC
GAGGTCAAGCGCGCCTACCGGCGTCTCGTCGTGCGCCTGCACCCCGACAA
AGGCGGGGACGAGAAGGCGTTCAAGGCCTTGCAGGAGGCCTACGAGGTCC
TCTCAGACCCCGCAAAGAGGAGGCTCTACGATGCCTACGGCAAAGCAGGC
GTGGAGATGGGGAGCGgggcccagggagggaggccagagGACGtgttctc
ctccttcttcggaTCGGGCCGGGCGCGCGGCTTTGGCGGAACGGGCGGCC
CCCGCCGGTCTCCCAACCTGTACCTGCAGGTGGAGCTGACCCTGGAAGAG
CTCTTCAAAGGCGCGACGCGAAAGGTGCGCCTGAACCGACAGAAGGTAGT
GGACCGgcggctggtggtggagcccAAGGTCTTGGAGGCCGCCTTCGAGC
GGGGCATGCAGGACGGGGCGCGTCTGgtgctggcgggggaggcggagggg
ctggggAATGCGGCCCCGGGAGACATCATCATCCAGGTTCGCGAGCTCAA
GCATCCCACCTTCGTCCGCCGGAACGCCGACCTGCTCTGCGAGATGAAAG
TGACTCTTACGGAGGCCTTGACGGGCTTTGAGCGACCCTTACGCCACCTG
GACGTCTGGCCAACctga

Synonyms

Publications