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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100340g3.5990.mrna |
| Orig protein id | gnl|cribi|Naga_100340g3.5990 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037247.1 | supercontig | KK037247.1:324759..327686 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8001 ID=rna8001|Name=rna8001|organism=Nannochloropsis gaditana|type=mRNA|length=794bp
AACGACACACTGCGAGTCACGCTTTTATCCTTAGTCAGTGCGCTCTCGCT
TATATCGAGCTACTTATCCTCCATTTGCCACATTAACCTTTTCCATACAT
CTCAAAGTATTTTGTGAAGCCCTATATTCGGTCACAAGAATCGCCTTTTC
AGGGAGTGAGCACAAGGTTTCCGGGGCGGATGATGCCGTGACTAATGGAC
CACGCAACTCAACACAGGACGATGCCTCATCCACTTCTGATGGGCTGGCT
CTTTAAACAGGCCAATCTCATGAACCTGTACGGAGCCATGAAAGCATACG
GTTTCCATCGGGTATATCGTCGCCTCTTGGAGGCGAACAACCGGCTTATG
GACAACTCGCAAGACAGGCGCATTGTCCGTGAGAACATCAAGCAGGCCAT
GCGTGCACCCAATCACGTAGTCGAGATCCTAGATGAATCCCACACGGTGG
CTTTCCTTACTCGGTATGCTAAGGAGCTGACGACAGGTCTCGAAACCAGG
GCGCCGCCTTTTTTCGTGAATGCTGCCAGGGTCGTGTTGCAGAAAACACC
GATGGGCAGGTTGCTTAGAGTTTTTTCGGATTGGCAGGATACAAGTCGTA
GGAAGAAGGGCACCCCACCGAAGCCGCCAACGTGATGTAGATACTCAGGT
ATAAGGAGCCCTCGTGTGCAGAGGGAAGACGAGGGCGATTGAGATGCTGC
ACGATGGTGCCGCCGCAGCGTGAAATAGATGAGCGGACATTCGATGTTTA
ATAAAGCCCAATTTGTACACCATTCAATCGCAATAGGATAATCG back to topprotein sequence of rna8001 >rna8001-protein ID=rna8001-protein|Name=rna8001|organism=Nannochloropsis gaditana|type=polypeptide|length=619bp
MPRQRVKWAVGSCGRPRPWSFLPLLFPLLHPALPPLPFLPFLPPAGDGGR
GMPKPETGRRRGRRGGSGPGSSWIHRDLAARAPASQALLPTPSAPPLHRH
HYQQHLHHAHQPAFPSSPSPSPSSFFPSSSSSTLLALSSLSHALSSPSVA
YPPTAFLPSAPLPSLSARLSALSSPDLLHMIFPFLLHRARPQEARAVLTT
LSLVNRRFHALACWEEYWRPVAEGLLPVLAVPRRHSPRRQEEEKAARGAG
EGGGRRGEDFRGYLLKYGHCLLHRRAWMGEALEDGFSLSFEVWDAMDGLR
MLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPAFSAASRDPLRRRFAS
MEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTRKDAAYLTEAPLA
YWEPFLPEGSISCFLDHWSPLMCPAYDGESMTVTIGFHVCPEAAGEDGEG
GEGGRGCGGAGEAVPTGGGGRGAVRRAPVLHLHHLHDPQHQRDTPVLPLS
AQGGVTTGGKGKGRGRARKNAMFPVQKFKRLPFYTTEGLRAVCNHRSVEA
CIVYIGRSAGREAAVRRGAEPGPLEGHGLCGTGNIRQAFSKLACSRKSSA
DSQTLTEFEGPGRGTRVRK back to topmRNA from alignment at KK037247.1:324759..327686- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8001 ID=rna8001|Name=rna8001|organism=Nannochloropsis gaditana|type=mRNA|length=2928bp|location=Sequence derived from alignment at KK037247.1:324759..327686- (Nannochloropsis gaditana)
GCCAACATTACGGACGCTACGCTTACCGAAACGGCCGCTTTCATCCTCAA
AGTTGTGACACGTTTAAGAGAGGATGTCTCTTTCTATTGCCTTGGACCGA
AAGTATCCAACGTCACTCTAAGTTGATATCGATGGGTTGCCTCCCCATAA
CCATCCTACAACCACGCACAGTACGTAAGGAAAGCAATATGGAAGAGGGA
AGTCAGGGGCACGGGGAGACAGTGCAGCTCCTGTCCTTGCTTGCAGCGCT
TTCAGACCTCCTTCCTCACCACGATGAAGGTATGCACCCCCTGCTTCCCC
TCAGGCATCGCGCTGTGCTCGTTCAACACGTTTCCAGGAGACAAAATATG
CAATTGATCATTGTATGTAGCAGTGTGTGCGTACTCATGAACCCAGAAGC
TATGAAGGAGTCCGACCGGTCGCCTTCTTCTCCGCGTCTTTGTTGACGAC
TTATGATGCCCTTTCTCGATCCAATAACCTACAGCGTTACAAAAGCCTCT
TGCACCGCAAGCCTCTTCCCATGCACGTCCAGGCCAGCAAGGCCTTAGAG
CTGATGCAGCCGCCCCCTCCCTCCCTGCGGGCTCAGTGTTGCCAGTCCCA
AGCCCGACCACTCCCTCCTCCACGGCCAGCCCCGGCCCTCCCGGACATAA
GGGTGCGACGCCTCTCTCAGCTCAGGCTAGACGCAGATTCAGGAAGCTTG
TGGCTGTTTTGCAGGACTTGTTGGAGGGGAGGAAGACTCGGAGACTGCTG
GCAGCGACGCCTGTGCTTGGGCCCCATCAGACCACCGTGCCAGCGGCGCC
GGCCGCGGCGAGAAGGTCCATAGCAAGATGGGGTTGATCGCCTCTCCATT
TTCCTCCCCTTGCACCTCCCCCCCTCCTCCACGTGCCCCGCGACAGCCTC
CTCCTTCGGCTCCTCCTCCCCCTCCTTCGCCTCGCCCCCGTCCGCCGCCT
CCCCCTCCTTCTCCTCTCCCTGCTCCTTCACATGCCACGGCAACGTGTTA
AGTGGGCCGTCGGCAGCTGCGGGCGCCCTCGGCCATGGAGCTTCCTCCCC
CTCCTCTTTCCCCTCCTCCATCCCGCCCTCCCTCCCCTCCCTTTCCTCCC
TTTCCTCCCTCCAGCTGGTGACGGCGGACGCGGGATGCCCAAGCCGGAGA
CAGGGAGGAGGAGGGGGCGGAGAGGAGGCTCGGGGCCGGGCTCCAGTTGG
ATCCACAGAGACCTCGCTGCCCGGGCCCCCGCCTCCCAAGCCCTCCTCCC
TACTCCCTCCGCCCCCCCCCTCCACCGGCATCACTACCAGCAGCACCTGC
ACCACGCCCACCAACCTGCCTTCCCCTCCTCCCCCTCCCCGTCTCCCTCC
TCCTTTTTCCCCTCCTCCTCCTCCTCCACGCTTCTCGCCCTCAGCTCCCT
CTCCCACGCCCTCTCCTCCCCCTCCGTCGCCTACCCCCCCACGGCCTTCC
TTCCCTCGGCGCCCCTGCCCTCCCTCTCCGCCCGCCTGAGCGCTCTCTCC
TCCCCCGACCTCCTCCACATGATCTTCCCCTTCCTCCTCCATCGGGCACG
CCCCCAGGAGGCCCGCGCCGTCCTCACCACCCTCTCCCTCGTCAACCGCC
GCTTCCACGCCCTCGCCTGCTGGGAGGAATACTGGCGGCCCGTCGCCGAG
GGCCTGCTCCCTGTCCTGGCAGTGCCGCGCCGACACTCCCCGAGGCGGCA
GGAGGAGGAGAAGGCGGCCCGGGGCGCGGGGGAGGGGGGGGGGAGGCGGG
GGGAGGACTTCCGCGGCTACCTGCTCAAGTACGGGCACTGCCTCCTGCAC
CGGCGGGCGTGGATGGGCGAGGCCCTGGAGGACGGCTTCTCGCTCTCCTT
CGAGGTGTGGGACGCCATGGACGGGCTGCGCATGCTCTCCGCCTCGGGCC
CCATCCGCGTGCAGATGGACCAACAGGGCGGCTTCACCTCTCTGCGCATG
GGGGGGACTCACCGACGCGAGGTCCCCGGACCCGCCTTCTCGGCCGCCAG
CCGCGACCCCCTGCGCCGCCGCTTCGCCTCCATGGAGGACTACTTCGGAC
GCGGGCACCTCCCGGAATTCGGCGCGGCCCTCTCGGTCCGCGTGACCGTC
ACGGACGAGCGGACGGGGCGCATGGCCCTCCTCTGGTCCACGCGAAAGGA
CGCGGCCTACCTGACGGAGGCGCCGCTCGCTTACTGGGAGCCCTTCCTGC
CCGAAGGCTCCATCTCCTGCTTCCTCGACCACTGGTCCCCCTTGATGTGC
CCCGCTTACGACGGGGAGAGCATGACCGTCACCATCGGCTTCCACGTCTG
CCCGGAGGCCGCGGGAGAGGATGGCGAGGGGGGGGAGGGAGGGAGGGGGT
GTGGGGGAGCAGGAGAAGCTGTACCGACTGGCGGGGGGGGACGTGGAGCG
GTACGAAGAGCACCAGTCTTACATCTCCATCACCTTCATGACCCTCAACA
CCAACGGGATACACCAGTTCTTCCGCTCTCTGCTCAAGGAGGGGTGACCA
CGGGGGGGAAAGGGAAGGGTCTGAAAAGGAGGAGGATGTGATATTGATAG
GAGAGTGGGCTGCAGGGACGTCGAAGGATTCGATGAGCGAATGTCAGATC
CAGAGGGCGGGGAAGAGCCAGAAAGAATGCCATGTTTCCTGTACAGAAAT
TTAAACGCCTGCCTTTTTATACAACGGAAGGGCTCCGAGCTGTTTGTAAT
CACAGAAGCGTTGAGGCATGCATAGTGTATATAGGAAGGTCGGCGGGGAG
GGAGGCTGCAGTACGAAGAGGGGCCGAGCCCGGCCCTTTGGAGGGTCACG
GGCTGTGCGGGACGGGGAATATTCGTCAAGCATTTAGCAAGCTTGCATGC
AGTCGCAAGTCCTCAGCGGACTCACAGACGCTCACAGAATTCGAAGGCCC
CGGGAGGGGTACAAGGGTGAGGAAATAA back to topCoding sequence (CDS) from alignment at KK037247.1:324759..327686- >rna8001 ID=rna8001|Name=rna8001|organism=Nannochloropsis gaditana|type=CDS|length=3720bp|location=Sequence derived from alignment at KK037247.1:324759..327686- (Nannochloropsis gaditana)
GGCGGGGAAGAGCCAGAAAGAATGCCATGTTTCCTGTACAGAAATTTAAA
CGCCTGCCTTTTTATACAACGGAAGGGCTCCGAGCTGTTTGTAATCACAG
AAGCGTTGAGGCATGCATAGTGTATATAGGAAGGTCGGCGGGGAGGGAGG
CTGCAGTACGAAGAGGGGCCGAGCCCGGCCCTTTGGAGGGTCACGGGCTG
TGCGGGACGGGGAATATTCGTCAAGCATTTAGCAAGCTTGCATGCAGTCG
CAAGTCCTCAGCGGACTCACAGACGCTCACAGAATTCGAAGGCCCCGGGA
GGGGTACAAGGGTGAGGAAATAAATGCCACGGCAACGTGTTAAGTGGGCC
GTCGGCAGCTGCGGGCGCCCTCGGCCATGGAGCTTCCTCCCCCTCCTCTT
TCCCCTCCTCCATCCCGCCCTCCCTCCCCTCCCTTTCCTCCCTTTCCTCC
CTCCAGCTGGTGACGGCGGACGCGGGATGCCCAAGCCGGAGACAGGGAGG
AGGAGGGGGCGGAGAGGAGGCTCGGGGCCGGGCTCCAGTTGGATCCACAG
AGACCTCGCTGCCCGGGCCCCCGCCTCCCAAGCCCTCCTCCCTACTCCCT
CCGCCCCCCCCCTCCACCGGCATCACTACCAGCAGCACCTGCACCACGCC
CACCAACCTGCCTTCCCCTCCTCCCCCTCCCCGTCTCCCTCCTCCTTTTT
CCCCTCCTCCTCCTCCTCCACGCTTCTCGCCCTCAGCTCCCTCTCCCACG
CCCTCTCCTCCCCCTCCGTCGCCTACCCCCCCACGGCCTTCCTTCCCTCG
GCGCCCCTGCCCTCCCTCTCCGCCCGCCTGAGCGCTCTCTCCTCCCCCGA
CCTCCTCCACATGATCTTCCCCTTCCTCCTCCATCGGGCACGCCCCCAGG
AGGCCCGCGCCGTCCTCACCACCCTCTCCCTCGTCAACCGCCGCTTCCAC
GCCCTCGCCTGCTGGGAGGAATACTGGCGGCCCGTCGCCGAGGGCCTGCT
CCCTGTCCTGGCAGTGCCGCGCCGACACTCCCCGAGGCGGCAGGAGGAGG
AGAAGGCGGCCCGGGGCGCGGGGGAGGGGGGGGGGAGGCGGGGGGAGGAC
TTCCGCGGCTACCTGCTCAAGTACGGGCACTGCCTCCTGCACCGGCGGGC
GTGGATGGGCGAGGCCCTGGAGGACGGCTTCTCGCTCTCCTTCGAGGTGT
GGGACGCCATGGACGGGCTGCGCATGCTCTCCGCCTCGGGCCCCATCCGC
GTGCAGATGGACCAACAGGGCGGCTTCACCTCTCTGCGCATGGGGGGGAC
TCACCGACGCGAGGTCCCCGGACCCGCCTTCTCGGCCGCCAGCCGCGACC
CCCTGCGCCGCCGCTTCGCCTCCATGGAGGACTACTTCGGACGCGGGCAC
CTCCCGGAATTCGGCGCGGCCCTCTCGGTCCGCGTGACCGTCACGGACGA
GCGGACGGGGCGCATGGCCCTCCTCTGGTCCACGCGAAAGGACGCGGCCT
ACCTGACGGAGGCGCCGCTCGCTTACTGGGAGCCCTTCCTGCCCGAAGGC
TCCATCTCCTGCTTCCTCGACCACTGGTCCCCCTTGATGTGCCCCGCTTA
CGACGGGGAGAGCATGACCGTCACCATCGGCTTCCACGTCTGCCCGGAGG
CCGCGGGAGAGGATGGCGAGGGGGGGGAGGGAGGGAGGGGGTGTGGGGGA
GCAGGAGAAGCTGTACCGACTGGCGGGGGGGGACGTGGAGCGGTACGAAG
AGCACCAGTCTTACATCTCCATCACCTTCATGACCCTCAACACCAACGGG
ATACACCAGTTCTTCCGCTCTCTGCTCAAGGAGGGGTGACCACGGGGGGG
AAAGGGAAGGGGCGGGGAAGAGCCAGAAAGAATGCCATGTTTCCTGTACA
GAAATTTAAACGCCTGCCTTTTTATACAACGGAAGGGCTCCGAGCTGTTT
GTAATCACAGAAGCGTTGAGGCATGCATAGTGTATATAGGAAGGTCGGCG
GGGAGGGAGGCTGCAGTACGAAGAGGGGCCGAGCCCGGCCCTTTGGAGGG
TCACGGGCTGTGCGGGACGGGGAATATTCGTCAAGCATTTAGCAAGCTTG
CATGCAGTCGCAAGTCCTCAGCGGACTCACAGACGCTCACAGAATTCGAA
GGCCCCGGGAGGGGTACAAGGGTGAGGAAATAAATGCCACGGCAACGTGT
TAAGTGGGCCGTCGGCAGCTGCGGGCGCCCTCGGCCATGGAGCTTCCTCC
CCCTCCTCTTTCCCCTCCTCCATCCCGCCCTCCCTCCCCTCCCTTTCCTC
CCTTTCCTCCCTCCAGCTGGTGACGGCGGACGCGGGATGCCCAAGCCGGA
GACAGGGAGGAGGAGGGGGCGGAGAGGAGGCTCGGGGCCGGGCTCCAGTT
GGATCCACAGAGACCTCGCTGCCCGGGCCCCCGCCTCCCAAGCCCTCCTC
CCTACTCCCTCCGCCCCCCCCCTCCACCGGCATCACTACCAGCAGCACCT
GCACCACGCCCACCAACCTGCCTTCCCCTCCTCCCCCTCCCCGTCTCCCT
CCTCCTTTTTCCCCTCCTCCTCCTCCTCCACGCTTCTCGCCCTCAGCTCC
CTCTCCCACGCCCTCTCCTCCCCCTCCGTCGCCTACCCCCCCACGGCCTT
CCTTCCCTCGGCGCCCCTGCCCTCCCTCTCCGCCCGCCTGAGCGCTCTCT
CCTCCCCCGACCTCCTCCACATGATCTTCCCCTTCCTCCTCCATCGGGCA
CGCCCCCAGGAGGCCCGCGCCGTCCTCACCACCCTCTCCCTCGTCAACCG
CCGCTTCCACGCCCTCGCCTGCTGGGAGGAATACTGGCGGCCCGTCGCCG
AGGGCCTGCTCCCTGTCCTGGCAGTGCCGCGCCGACACTCCCCGAGGCGG
CAGGAGGAGGAGAAGGCGGCCCGGGGCGCGGGGGAGGGGGGGGGGAGGCG
GGGGGAGGACTTCCGCGGCTACCTGCTCAAGTACGGGCACTGCCTCCTGC
ACCGGCGGGCGTGGATGGGCGAGGCCCTGGAGGACGGCTTCTCGCTCTCC
TTCGAGGTGTGGGACGCCATGGACGGGCTGCGCATGCTCTCCGCCTCGGG
CCCCATCCGCGTGCAGATGGACCAACAGGGCGGCTTCACCTCTCTGCGCA
TGGGGGGGACTCACCGACGCGAGGTCCCCGGACCCGCCTTCTCGGCCGCC
AGCCGCGACCCCCTGCGCCGCCGCTTCGCCTCCATGGAGGACTACTTCGG
ACGCGGGCACCTCCCGGAATTCGGCGCGGCCCTCTCGGTCCGCGTGACCG
TCACGGACGAGCGGACGGGGCGCATGGCCCTCCTCTGGTCCACGCGAAAG
GACGCGGCCTACCTGACGGAGGCGCCGCTCGCTTACTGGGAGCCCTTCCT
GCCCGAAGGCTCCATCTCCTGCTTCCTCGACCACTGGTCCCCCTTGATGT
GCCCCGCTTACGACGGGGAGAGCATGACCGTCACCATCGGCTTCCACGTC
TGCCCGGAGGCCGCGGGAGAGGATGGCGAGGGGGGGGAGGGAGGGAGGGG
GTGTGGGGGAGCAGGAGAAGCTGTACCGACTGGCGGGGGGGGACGTGGAG
CGGTACGAAGAGCACCAGTCTTACATCTCCATCACCTTCATGACCCTCAA
CACCAACGGGATACACCAGTTCTTCCGCTCTCTGCTCAAGGAGGGGTGAC
CACGGGGGGGAAAGGGAAGG back to top
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