EWM22694.1, cds7979 (CDS) Nannochloropsis gaditana

Overview
NameEWM22694.1
Unique Namecds7979
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:325169..326705 -
Alignment locationKK037247.1:324759..325081 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22694.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100340g3.5990.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:325169..326705 -
KK037247.1supercontigKK037247.1:324759..325081 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22694.1 vs. NCBI_GenBank
Match: gi|585103262|gb|EWM22694.1| (hypothetical protein Naga_100340g3 [Nannochloropsis gaditana])

HSP 1 Score: 1235.71 bits (3196), Expect = 0.000e+0
Identity = 619/619 (100.00%), Postives = 619/619 (100.00%), Query Frame = 0
Query:    1 MPRQRVKWAVGSCGRPRPWSFLPLLFPLLHPALPPLPFLPFLPPAGDGGRGMPKPETGRRRGRRGGSGPGSSWIHRDLAARAPASQALLPTPSAPPLHRHHYQQHLHHAHQPAFPSSPSPSPSSFFPSSSSSTLLALSSLSHALSSPSVAYPPTAFLPSAPLPSLSARLSALSSPDLLHMIFPFLLHRARPQEARAVLTTLSLVNRRFHALACWEEYWRPVAEGLLPVLAVPRRHSPRRQEEEKAARGAGEGGGRRGEDFRGYLLKYGHCLLHRRAWMGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPAFSAASRDPLRRRFASMEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTRKDAAYLTEAPLAYWEPFLPEGSISCFLDHWSPLMCPAYDGESMTVTIGFHVCPEAAGEDGEGGEGGRGCGGAGEAVPTGGGGRGAVRRAPVLHLHHLHDPQHQRDTPVLPLSAQGGVTTGGKGKGRGRARKNAMFPVQKFKRLPFYTTEGLRAVCNHRSVEACIVYIGRSAGREAAVRRGAEPGPLEGHGLCGTGNIRQAFSKLACSRKSSADSQTLTEFEGPGRGTRVRK 619
            MPRQRVKWAVGSCGRPRPWSFLPLLFPLLHPALPPLPFLPFLPPAGDGGRGMPKPETGRRRGRRGGSGPGSSWIHRDLAARAPASQALLPTPSAPPLHRHHYQQHLHHAHQPAFPSSPSPSPSSFFPSSSSSTLLALSSLSHALSSPSVAYPPTAFLPSAPLPSLSARLSALSSPDLLHMIFPFLLHRARPQEARAVLTTLSLVNRRFHALACWEEYWRPVAEGLLPVLAVPRRHSPRRQEEEKAARGAGEGGGRRGEDFRGYLLKYGHCLLHRRAWMGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPAFSAASRDPLRRRFASMEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTRKDAAYLTEAPLAYWEPFLPEGSISCFLDHWSPLMCPAYDGESMTVTIGFHVCPEAAGEDGEGGEGGRGCGGAGEAVPTGGGGRGAVRRAPVLHLHHLHDPQHQRDTPVLPLSAQGGVTTGGKGKGRGRARKNAMFPVQKFKRLPFYTTEGLRAVCNHRSVEACIVYIGRSAGREAAVRRGAEPGPLEGHGLCGTGNIRQAFSKLACSRKSSADSQTLTEFEGPGRGTRVRK
Sbjct:    1 MPRQRVKWAVGSCGRPRPWSFLPLLFPLLHPALPPLPFLPFLPPAGDGGRGMPKPETGRRRGRRGGSGPGSSWIHRDLAARAPASQALLPTPSAPPLHRHHYQQHLHHAHQPAFPSSPSPSPSSFFPSSSSSTLLALSSLSHALSSPSVAYPPTAFLPSAPLPSLSARLSALSSPDLLHMIFPFLLHRARPQEARAVLTTLSLVNRRFHALACWEEYWRPVAEGLLPVLAVPRRHSPRRQEEEKAARGAGEGGGRRGEDFRGYLLKYGHCLLHRRAWMGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPAFSAASRDPLRRRFASMEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTRKDAAYLTEAPLAYWEPFLPEGSISCFLDHWSPLMCPAYDGESMTVTIGFHVCPEAAGEDGEGGEGGRGCGGAGEAVPTGGGGRGAVRRAPVLHLHHLHDPQHQRDTPVLPLSAQGGVTTGGKGKGRGRARKNAMFPVQKFKRLPFYTTEGLRAVCNHRSVEACIVYIGRSAGREAAVRRGAEPGPLEGHGLCGTGNIRQAFSKLACSRKSSADSQTLTEFEGPGRGTRVRK 619          
BLAST of EWM22694.1 vs. NCBI_GenBank
Match: gi|585103442|gb|EWM22815.1| (hypothetical protein Naga_100437g2 [Nannochloropsis gaditana])

HSP 1 Score: 127.487 bits (319), Expect = 2.579e-27
Identity = 81/251 (32.27%), Postives = 119/251 (47.41%), Query Frame = 0
Query:  192 QEARAVLTTLSLVNRRFHALACWEEYWRPVAEGLLPVLAVPRRHSPRRQEEEKAARGAGEGGGRRGEDFRGYLLKYGHCLLHRRAWMGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPAFSAASRDPLRRRFASMEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTR-KDAAYLTEAPLAYWEPFLPEGSISCFLDHWSPLMCPAYDGESMTVTIGFHVCP 441
            Q  R  L  L  V R + A A  + +WRP+    LP L +                 A E    +   +R   L+Y  CL       GE       LSFE++D  D +R+  ASGP+ V    + G T+LR+ GT R EV  P FSA SRDP+ +RF ++  Y      P+F   L VRV  TD RTG  AL++++  K    + ++ L +W  FLP  S+  + + WS  +      E++ ++  F+V P
Sbjct:  265 QAVRVNLAPLLTVARLWRATASQDRFWRPIVSWTLPTLTM----------------DAKETRTTKPFPYRQAFLRYARCLALPVVGDGEEWHAHVLLSFEIYDVQDSMRLFVASGPLEVIQSTESGLTALRLTGTKRSEVCRP-FSAKSRDPVNKRFENISAYLCHSWRPDFPVGLRVRVVATDARTGTQALIYNSEPKTKRSVKDSTLNFWRRFLPRHSLFVW-EAWSRWVLQNGTQEAVEISTSFYVSP 497          
BLAST of EWM22694.1 vs. NCBI_GenBank
Match: gi|553182510|ref|XP_005853741.1| (hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >gi|422295323|gb|EKU22622.1| hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >gi|585113057|gb|EWM30397.1| hypothetical protein Naga_100026g9 [Nannochloropsis gaditana])

HSP 1 Score: 120.553 bits (301), Expect = 4.893e-25
Identity = 104/312 (33.33%), Postives = 152/312 (48.72%), Query Frame = 0
Query:  156 FLPSAPLPSLSARLSALSSPDLLHMIFPFLLHRARPQEARAVLTTLSLVNRRFHALACWEEYWRPVAEGLLPVLAVPRRHSPR--RQEEEKAARG------------------------AGEGGGRRGEDFRGYLLKYGHCLLHRRAWMGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPAFSAASRDPLRRRFASMEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTRKDAAYLTEAPLAYWEPFLPEGSISCFLDHWSPLMCPAYDGESMTVTIGFHVCP 441
             +P  P P++ A  +AL    LLH  F FL+   R Q  R  L  L+LV R++  LA  + +W+PV   L P      R SP     +EE  A G                        +   GGR G   R YL+++G CL  R    G    +G +LSF++ D  DG R+ S++GPIR       G T++++ G  RR V  P FSAASRD      +S+E+ F  G   ++  + ++RVT  DERTG+MALL+S+ K      E PL   +  +P+G++      WS +  P+ D     +T+ F+V P
Sbjct:  221 LMPPIPHPAVPAPSTALGDAALLHYCFDFLVE-GRLQ-YRKQLGDLALVCRQWRDLAQADRFWKPVVLQLFP------RLSPALADHDEEDGASGPDPDAAALTEAAVDGAGAGASSEPSTSPGGRAGW-HRKYLIQFGRCLFDRPIRQG-PWHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTG-RRRRVTAP-FSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVE-PLGE-DMGVPQGTL-LVNQGWSRVTIPSTDLAMQMLTV-FYVAP 516          
BLAST of EWM22694.1 vs. NCBI_GenBank
Match: gi|585105795|gb|EWM24393.1| (hypothetical protein Naga_100283g6 [Nannochloropsis gaditana])

HSP 1 Score: 62.7734 bits (151), Expect = 2.618e-7
Identity = 39/112 (34.82%), Postives = 61/112 (54.46%), Query Frame = 0
Query:  284 DGFSLSFEVWDAMDGLRMLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPA----FSAASRDPLRRRFASMEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTRKDA 391
            + ++LS E++D   G R+  + G + + M Q  G     M    +  V G A    FSAASRD +  RF +++DYF R H P     L   VT   ++TGRMA+L+++ K++
Sbjct:   22 EEYTLSVEIFDRKGGFRLFCSYGRVSI-MHQGVGVEGRWMT---KLAVTGFASCWHFSAASRDSVHGRFETIKDYFERAHEPGLEHCLCTEVTAMHKKTGRMAVLYASSKES 129          
The following BLAST results are available for this feature:
BLAST of EWM22694.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585103262|gb|EWM22694.1|0.000e+0100.00hypothetical protein Naga_100340g3 [Nannochloropsi... [more]
gi|585103442|gb|EWM22815.1|2.579e-2732.27hypothetical protein Naga_100437g2 [Nannochloropsi... [more]
gi|553182510|ref|XP_005853741.1|4.893e-2533.33hypothetical protein NGA_0168202 [Nannochloropsis ... [more]
gi|585105795|gb|EWM24393.1|2.618e-734.82hypothetical protein Naga_100283g6 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8001rna8001Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications